data_JFA
#

_chem_comp.id                                   JFA
_chem_comp.name                                 "1-[(1H-benzimidazol-2-yl)methyl]-4-[(2,4-dichlorophenyl)methyl]-1,3-dihydro-2H-imidazol-2-one"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H14 Cl2 N4 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-09-07
_chem_comp.pdbx_modified_date                   2019-09-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       373.236
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JFA
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6MES
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JFA  C1   C1   C   0  1  Y  N  N  -38.520  13.597   7.222  -5.159  -0.956   0.949  C1   JFA   1  
JFA  C2   C2   C   0  1  Y  N  N  -39.882  13.351   7.188  -3.909  -0.870   1.532  C2   JFA   2  
JFA  C3   C3   C   0  1  Y  N  N  -40.809  14.389   7.110  -3.029   0.120   1.137  C3   JFA   3  
JFA  C4   C4   C   0  1  N  N  N  -42.281  14.091   6.926  -1.666   0.214   1.773  C4   JFA   4  
JFA  C5   C5   C   0  1  N  N  N  -43.020  13.784   8.189  -0.642  -0.412   0.861  C5   JFA   5  
JFA  C6   C6   C   0  1  N  N  N  -42.508  13.407   9.432   0.117   0.232  -0.020  C6   JFA   6  
JFA  C7   C7   C   0  1  N  N  N  -43.527  12.658  11.632   1.910  -0.423  -1.697  C7   JFA   7  
JFA  N1   N1   N   0  1  Y  N  N  -44.636  14.140  13.308   4.229  -1.062  -0.872  N1   JFA   8  
JFA  N2   N2   N   0  1  Y  N  N  -42.445  14.421  13.019   3.629   1.019  -0.613  N2   JFA   9  
JFA  N3   N3   N   0  1  N  N  N  -44.386  13.729   8.274  -0.320  -1.759   0.797  N3   JFA  10  
JFA  C8   C8   C   0  1  Y  N  N  -43.553  13.731  12.671   3.247  -0.141  -1.061  C8   JFA  11  
JFA  CL1  CL1  CL  0  0  N  N  N  -41.402  17.031   7.087  -2.292   2.267  -0.338  CL1  JFA  12  
JFA  C16  C9   C   0  1  Y  N  N  -40.307  15.686   7.103  -3.398   1.025   0.158  C16  JFA  13  
JFA  C17  C10  C   0  1  Y  N  N  -38.953  15.959   7.133  -4.649   0.939  -0.426  C17  JFA  14  
JFA  C    C11  C   0  1  Y  N  N  -38.073  14.901   7.189  -5.528  -0.055  -0.034  C    JFA  15  
JFA  CL   CL2  CL  0  0  N  N  N  -36.358  15.221   7.227  -7.098  -0.164  -0.767  CL   JFA  16  
JFA  C15  C12  C   0  1  N  N  N  -44.744  13.300   9.530   0.638  -1.916  -0.137  C15  JFA  17  
JFA  O    O1   O   0  1  N  N  N  -45.875  13.094   9.946   1.158  -2.969  -0.458  O    JFA  18  
JFA  N    N4   N   0  1  N  N  N  -43.568  13.109  10.244   0.922  -0.704  -0.653  N    JFA  19  
JFA  C14  C13  C   0  1  Y  N  N  -42.830  15.374  13.950   4.887   0.923  -0.110  C14  JFA  20  
JFA  C9   C14  C   0  1  Y  N  N  -44.202  15.198  14.118   5.287  -0.415  -0.264  C9   JFA  21  
JFA  C13  C15  C   0  1  Y  N  N  -42.133  16.381  14.611   5.760   1.837   0.483  C13  JFA  22  
JFA  C12  C16  C   0  1  Y  N  N  -42.848  17.229  15.445   6.995   1.428   0.900  C12  JFA  23  
JFA  C11  C17  C   0  1  Y  N  N  -44.221  17.073  15.613   7.387   0.104   0.758  C11  JFA  24  
JFA  C10  C18  C   0  1  Y  N  N  -44.911  16.060  14.957   6.542  -0.816   0.174  C10  JFA  25  
JFA  H1   H1   H   0  1  N  N  N  -37.817  12.779   7.274  -5.846  -1.730   1.258  H1   JFA  26  
JFA  H2   H2   H   0  1  N  N  N  -40.235  12.331   7.223  -3.620  -1.576   2.296  H2   JFA  27  
JFA  H3   H3   H   0  1  N  N  N  -42.752  14.968   6.458  -1.413   1.261   1.939  H3   JFA  28  
JFA  H4   H4   H   0  1  N  N  N  -42.374  13.224   6.256  -1.673  -0.314   2.727  H4   JFA  29  
JFA  H5   H5   H   0  1  N  N  N  -41.464  13.359   9.703   0.108   1.295  -0.210  H5   JFA  30  
JFA  H6   H6   H   0  1  N  N  N  -44.397  12.006  11.800   1.592   0.446  -2.275  H6   JFA  31  
JFA  H7   H7   H   0  1  N  N  N  -42.602  12.078  11.770   1.997  -1.286  -2.358  H7   JFA  32  
JFA  H8   H8   H   0  1  N  N  N  -45.563  13.774  13.229   4.192  -2.001  -1.115  H8   JFA  33  
JFA  H10  H10  H   0  1  N  N  N  -45.022  13.964   7.539  -0.715  -2.465   1.332  H10  JFA  34  
JFA  H11  H11  H   0  1  N  N  N  -38.593  16.977   7.113  -4.939   1.645  -1.190  H11  JFA  35  
JFA  H12  H12  H   0  1  N  N  N  -41.068  16.499  14.479   5.460   2.867   0.612  H12  JFA  36  
JFA  H13  H13  H   0  1  N  N  N  -42.333  18.020  15.970   7.668   2.138   1.358  H13  JFA  37  
JFA  H14  H14  H   0  1  N  N  N  -44.758  17.749  16.262   8.367  -0.204   1.092  H14  JFA  38  
JFA  H15  H15  H   0  1  N  N  N  -45.976  15.942  15.094   6.855  -1.843   0.059  H15  JFA  39  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JFA  C4   C3   SING  N  N   1  
JFA  C4   C5   SING  N  N   2  
JFA  CL1  C16  SING  N  N   3  
JFA  C16  C3   DOUB  Y  N   4  
JFA  C16  C17  SING  Y  N   5  
JFA  C3   C2   SING  Y  N   6  
JFA  C17  C    DOUB  Y  N   7  
JFA  C2   C1   DOUB  Y  N   8  
JFA  C    C1   SING  Y  N   9  
JFA  C    CL   SING  N  N  10  
JFA  C5   N3   SING  N  N  11  
JFA  C5   C6   DOUB  N  N  12  
JFA  N3   C15  SING  N  N  13  
JFA  C6   N    SING  N  N  14  
JFA  C15  O    DOUB  N  N  15  
JFA  C15  N    SING  N  N  16  
JFA  N    C7   SING  N  N  17  
JFA  C7   C8   SING  N  N  18  
JFA  C8   N2   DOUB  Y  N  19  
JFA  C8   N1   SING  Y  N  20  
JFA  N2   C14  SING  Y  N  21  
JFA  N1   C9   SING  Y  N  22  
JFA  C14  C9   DOUB  Y  N  23  
JFA  C14  C13  SING  Y  N  24  
JFA  C9   C10  SING  Y  N  25  
JFA  C13  C12  DOUB  Y  N  26  
JFA  C10  C11  DOUB  Y  N  27  
JFA  C12  C11  SING  Y  N  28  
JFA  C1   H1   SING  N  N  29  
JFA  C2   H2   SING  N  N  30  
JFA  C4   H3   SING  N  N  31  
JFA  C4   H4   SING  N  N  32  
JFA  C6   H5   SING  N  N  33  
JFA  C7   H6   SING  N  N  34  
JFA  C7   H7   SING  N  N  35  
JFA  N1   H8   SING  N  N  36  
JFA  N3   H10  SING  N  N  37  
JFA  C17  H11  SING  N  N  38  
JFA  C13  H12  SING  N  N  39  
JFA  C12  H13  SING  N  N  40  
JFA  C11  H14  SING  N  N  41  
JFA  C10  H15  SING  N  N  42  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JFA  SMILES            ACDLabs               12.01  "c4cc(CC=1NC(=O)N(C=1)Cc2nc3c(n2)cccc3)c(Cl)cc4Cl"  
JFA  InChI             InChI                 1.03   "InChI=1S/C18H14Cl2N4O/c19-12-6-5-11(14(20)8-12)7-13-9-24(18(25)21-13)10-17-22-15-3-1-2-4-16(15)23-17/h1-6,8-9H,7,10H2,(H,21,25)(H,22,23)"  
JFA  InChIKey          InChI                 1.03   ZHAMKWDXQMODPF-UHFFFAOYSA-N  
JFA  SMILES_CANONICAL  CACTVS                3.385  "Clc1ccc(CC2=CN(Cc3[nH]c4ccccc4n3)C(=O)N2)c(Cl)c1"  
JFA  SMILES            CACTVS                3.385  "Clc1ccc(CC2=CN(Cc3[nH]c4ccccc4n3)C(=O)N2)c(Cl)c1"  
JFA  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1ccc2c(c1)[nH]c(n2)CN3C=C(NC3=O)Cc4ccc(cc4Cl)Cl"  
JFA  SMILES            "OpenEye OEToolkits"  2.0.6  "c1ccc2c(c1)[nH]c(n2)CN3C=C(NC3=O)Cc4ccc(cc4Cl)Cl"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
JFA  "SYSTEMATIC NAME"  ACDLabs               12.01  "1-[(1H-benzimidazol-2-yl)methyl]-4-[(2,4-dichlorophenyl)methyl]-1,3-dihydro-2H-imidazol-2-one"  
JFA  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "3-(1~{H}-benzimidazol-2-ylmethyl)-5-[(2,4-dichlorophenyl)methyl]-1~{H}-imidazol-2-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JFA  "Create component"  2018-09-07  RCSB  
JFA  "Initial release"   2019-09-18  RCSB  
##
