data_GYA
#

_chem_comp.id                                   GYA
_chem_comp.name                                 
;2-[(2S)-1-{[(2-chlorophenyl)sulfanyl]acetyl}pyrrolidin-2-yl]-N-(5,6-dimethoxy-2,3-dihydro-1H-inden-2-yl)-5-hydroxy-6-ox
o-1,6-dihydropyrimidine-4-carboxamide
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C28 H29 Cl N4 O6 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        SRI-30026
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-06-28
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       585.071
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GYA
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5WB3
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GYA  C1   C1   C   0  1  N  N  N  130.403  106.263  286.962  -5.875   1.918  -0.377  C1   GYA   1  
GYA  C10  C2   C   0  1  N  N  N  133.213   99.845  279.646   5.841   3.358  -2.106  C10  GYA   2  
GYA  C11  C3   C   0  1  Y  N  N  134.817   99.834  282.923   4.925   1.616   0.991  C11  GYA   3  
GYA  C12  C4   C   0  1  N  N  N  135.822   97.680  282.873   6.132   0.588   2.764  C12  GYA   4  
GYA  C13  C5   C   0  1  Y  N  N  135.392  100.689  283.850   3.762   1.262   1.651  C13  GYA   5  
GYA  C14  C6   C   0  1  Y  N  N  135.479  102.041  283.543   2.527   1.590   1.113  C14  GYA   6  
GYA  C15  C7   C   0  1  N  N  N  136.046  103.177  284.351   1.131   1.320   1.633  C15  GYA   7  
GYA  C16  C8   C   0  1  N  N  N  130.238  104.115  285.910  -4.728  -0.119  -0.197  C16  GYA   8  
GYA  C17  C9   C   0  1  N  N  S  129.492  102.824  285.651  -4.766  -1.625  -0.235  C17  GYA   9  
GYA  C18  C10  C   0  1  N  N  N  129.893  102.257  283.274  -2.296  -1.959  -0.509  C18  GYA  10  
GYA  C19  C11  C   0  1  N  N  N  130.668  101.438  282.262  -1.020  -2.581  -0.002  C19  GYA  11  
GYA  C2   C12  C   0  1  N  N  N  131.646  106.396  286.349  -4.602   2.598  -0.106  C2   GYA  12  
GYA  C20  C13  C   0  1  Y  N  N  131.024  103.452  280.248   1.735  -2.921  -0.353  C20  GYA  13  
GYA  C21  C14  C   0  1  Y  N  N  131.533  104.212  281.302   1.565  -3.682   0.796  C21  GYA  14  
GYA  C22  C15  C   0  1  Y  N  N  132.081  105.457  281.055   2.651  -4.312   1.373  C22  GYA  15  
GYA  C23  C16  C   0  1  Y  N  N  132.131  105.953  279.770   3.907  -4.186   0.808  C23  GYA  16  
GYA  C24  C17  C   0  1  Y  N  N  131.637  105.214  278.718   4.081  -3.428  -0.337  C24  GYA  17  
GYA  C25  C18  C   0  1  Y  N  N  131.085  103.971  278.958   2.999  -2.801  -0.923  C25  GYA  18  
GYA  C26  C19  C   0  1  N  N  N  130.969  100.961  285.121  -3.617  -2.980   1.368  C26  GYA  19  
GYA  C27  C20  C   0  1  N  N  N  130.958  101.231  286.610  -5.103  -3.415   1.360  C27  GYA  20  
GYA  C28  C21  C   0  1  N  N  N  129.571  101.821  286.813  -5.795  -2.150   0.789  C28  GYA  21  
GYA  C3   C22  C   0  1  N  N  N  132.126  105.395  285.561  -3.481   1.810   0.099  C3   GYA  22  
GYA  C4   C23  C   0  1  N  N  N  133.469  105.529  284.903  -2.170   2.437   0.377  C4   GYA  23  
GYA  C5   C24  C   0  1  N  N  N  135.286  104.386  283.770   0.216   2.286   0.851  C5   GYA  24  
GYA  C6   C25  C   0  1  N  N  N  135.221  104.019  282.277   1.006   2.507  -0.456  C6   GYA  25  
GYA  C7   C26  C   0  1  Y  N  N  134.991  102.532  282.337   2.456   2.272  -0.087  C7   GYA  26  
GYA  C8   C27  C   0  1  Y  N  N  134.415  101.687  281.402   3.618   2.628  -0.751  C8   GYA  27  
GYA  C9   C28  C   0  1  Y  N  N  134.321  100.333  281.696   4.853   2.308  -0.215  C9   GYA  28  
GYA  N1   N1   N   0  1  N  N  N  133.943  104.434  284.314  -1.082   1.666   0.576  N1   GYA  29  
GYA  N2   N2   N   0  1  N  N  N  131.438  104.264  285.342  -3.595   0.471   0.044  N2   GYA  30  
GYA  N3   N3   N   0  1  N  N  N  130.114  102.027  284.579  -3.455  -2.169   0.147  N3   GYA  31  
GYA  N4   N4   N   0  1  N  N  N  129.717  105.093  286.717  -5.878   0.567  -0.405  N4   GYA  32  
GYA  O1   O1   O   0  1  N  N  N  129.900  107.128  287.694  -6.899   2.552  -0.567  O1   GYA  33  
GYA  O2   O2   O   0  1  N  N  N  132.314  107.531  286.593  -4.527   3.952  -0.059  O2   GYA  34  
GYA  O3   O3   O   0  1  N  N  N  133.776   99.388  280.872   5.993   2.659  -0.869  O3   GYA  35  
GYA  O4   O4   O   0  1  N  N  N  134.665   98.483  283.089   6.135   1.293   1.521  O4   GYA  36  
GYA  O5   O5   O   0  1  N  N  N  134.101  106.583  284.926  -2.073   3.648   0.426  O5   GYA  37  
GYA  O6   O6   O   0  1  N  N  N  129.082  103.103  282.910  -2.280  -1.270  -1.507  O6   GYA  38  
GYA  S1   S1   S   0  1  N  N  N  130.317  101.855  280.529   0.353  -2.116  -1.092  S1   GYA  39  
GYA  CL1  CL1  CL  0  0  N  N  N  130.468  103.068  277.616   3.218  -1.851  -2.359  CL1  GYA  40  
GYA  H1   H1   H   0  1  N  N  N  132.813   98.988  279.084   5.280   2.739  -2.807  H1   GYA  41  
GYA  H2   H2   H   0  1  N  N  N  132.401  100.556  279.858   5.304   4.290  -1.934  H2   GYA  42  
GYA  H3   H3   H   0  1  N  N  N  133.991  100.344  279.049   6.825   3.577  -2.523  H3   GYA  43  
GYA  H4   H4   H   0  1  N  N  N  135.570   96.622  283.036   5.631   1.190   3.522  H4   GYA  44  
GYA  H5   H5   H   0  1  N  N  N  136.176   97.817  281.841   5.603  -0.358   2.643  H5   GYA  45  
GYA  H6   H6   H   0  1  N  N  N  136.613   97.981  283.575   7.159   0.393   3.074  H6   GYA  46  
GYA  H7   H7   H   0  1  N  N  N  135.764  100.312  284.791   3.816   0.729   2.589  H7   GYA  47  
GYA  H8   H8   H   0  1  N  N  N  135.836  103.050  285.423   0.847   0.286   1.434  H8   GYA  48  
GYA  H9   H9   H   0  1  N  N  N  137.131  103.275  284.198   1.078   1.528   2.701  H9   GYA  49  
GYA  H10  H10  H   0  1  N  N  N  128.439  103.037  285.415  -5.033  -1.964  -1.236  H10  GYA  50  
GYA  H11  H11  H   0  1  N  N  N  130.421  100.377  282.417  -0.819  -2.225   1.008  H11  GYA  51  
GYA  H12  H12  H   0  1  N  N  N  131.742  101.595  282.443  -1.124  -3.666   0.009  H12  GYA  52  
GYA  H13  H13  H   0  1  N  N  N  131.499  103.828  282.311   0.585  -3.781   1.239  H13  GYA  53  
GYA  H14  H14  H   0  1  N  N  N  132.472  106.044  281.873   2.519  -4.904   2.267  H14  GYA  54  
GYA  H15  H15  H   0  1  N  N  N  132.560  106.927  279.587   4.754  -4.679   1.261  H15  GYA  55  
GYA  H16  H16  H   0  1  N  N  N  131.681  105.604  277.712   5.062  -3.335  -0.778  H16  GYA  56  
GYA  H17  H17  H   0  1  N  N  N  130.551   99.968  284.897  -3.401  -2.381   2.253  H17  GYA  57  
GYA  H18  H18  H   0  1  N  N  N  131.989  101.029  284.715  -2.965  -3.853   1.334  H18  GYA  58  
GYA  H19  H19  H   0  1  N  N  N  131.086  100.302  287.186  -5.256  -4.273   0.706  H19  GYA  59  
GYA  H20  H20  H   0  1  N  N  N  131.743  101.948  286.892  -5.453  -3.629   2.370  H20  GYA  60  
GYA  H21  H21  H   0  1  N  N  N  129.488  102.326  287.786  -5.966  -1.415   1.575  H21  GYA  61  
GYA  H22  H22  H   0  1  N  N  N  128.791  101.050  286.732  -6.731  -2.412   0.295  H22  GYA  62  
GYA  H23  H23  H   0  1  N  N  N  135.842  105.322  283.928   0.088   3.223   1.393  H23  GYA  63  
GYA  H24  H24  H   0  1  N  N  N  136.164  104.258  281.764   0.689   1.793  -1.215  H24  GYA  64  
GYA  H25  H25  H   0  1  N  N  N  134.389  104.533  281.774   0.868   3.527  -0.814  H25  GYA  65  
GYA  H26  H26  H   0  1  N  N  N  134.046  102.074  280.463   3.561   3.165  -1.686  H26  GYA  66  
GYA  H27  H27  H   0  1  N  N  N  133.359  103.625  284.245  -1.160   0.700   0.536  H27  GYA  67  
GYA  H28  H28  H   0  1  N  N  N  128.820  104.955  287.137  -6.702   0.087  -0.581  H28  GYA  68  
GYA  H29  H29  H   0  1  N  N  N  133.122  107.537  286.093  -5.370   4.398  -0.217  H29  GYA  69  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GYA  CL1  C25  SING  N  N   1  
GYA  C24  C25  DOUB  Y  N   2  
GYA  C24  C23  SING  Y  N   3  
GYA  C25  C20  SING  Y  N   4  
GYA  C10  O3   SING  N  N   5  
GYA  C23  C22  DOUB  Y  N   6  
GYA  C20  S1   SING  N  N   7  
GYA  C20  C21  DOUB  Y  N   8  
GYA  S1   C19  SING  N  N   9  
GYA  O3   C9   SING  N  N  10  
GYA  C22  C21  SING  Y  N  11  
GYA  C8   C9   DOUB  Y  N  12  
GYA  C8   C7   SING  Y  N  13  
GYA  C9   C11  SING  Y  N  14  
GYA  C19  C18  SING  N  N  15  
GYA  C6   C7   SING  N  N  16  
GYA  C6   C5   SING  N  N  17  
GYA  C7   C14  DOUB  Y  N  18  
GYA  C12  O4   SING  N  N  19  
GYA  O6   C18  DOUB  N  N  20  
GYA  C11  O4   SING  N  N  21  
GYA  C11  C13  DOUB  Y  N  22  
GYA  C18  N3   SING  N  N  23  
GYA  C14  C13  SING  Y  N  24  
GYA  C14  C15  SING  N  N  25  
GYA  C5   N1   SING  N  N  26  
GYA  C5   C15  SING  N  N  27  
GYA  N1   C4   SING  N  N  28  
GYA  N3   C26  SING  N  N  29  
GYA  N3   C17  SING  N  N  30  
GYA  C4   O5   DOUB  N  N  31  
GYA  C4   C3   SING  N  N  32  
GYA  C26  C27  SING  N  N  33  
GYA  N2   C3   SING  N  N  34  
GYA  N2   C16  DOUB  N  N  35  
GYA  C3   C2   DOUB  N  N  36  
GYA  C17  C16  SING  N  N  37  
GYA  C17  C28  SING  N  N  38  
GYA  C16  N4   SING  N  N  39  
GYA  C2   O2   SING  N  N  40  
GYA  C2   C1   SING  N  N  41  
GYA  C27  C28  SING  N  N  42  
GYA  N4   C1   SING  N  N  43  
GYA  C1   O1   DOUB  N  N  44  
GYA  C10  H1   SING  N  N  45  
GYA  C10  H2   SING  N  N  46  
GYA  C10  H3   SING  N  N  47  
GYA  C12  H4   SING  N  N  48  
GYA  C12  H5   SING  N  N  49  
GYA  C12  H6   SING  N  N  50  
GYA  C13  H7   SING  N  N  51  
GYA  C15  H8   SING  N  N  52  
GYA  C15  H9   SING  N  N  53  
GYA  C17  H10  SING  N  N  54  
GYA  C19  H11  SING  N  N  55  
GYA  C19  H12  SING  N  N  56  
GYA  C21  H13  SING  N  N  57  
GYA  C22  H14  SING  N  N  58  
GYA  C23  H15  SING  N  N  59  
GYA  C24  H16  SING  N  N  60  
GYA  C26  H17  SING  N  N  61  
GYA  C26  H18  SING  N  N  62  
GYA  C27  H19  SING  N  N  63  
GYA  C27  H20  SING  N  N  64  
GYA  C28  H21  SING  N  N  65  
GYA  C28  H22  SING  N  N  66  
GYA  C5   H23  SING  N  N  67  
GYA  C6   H24  SING  N  N  68  
GYA  C6   H25  SING  N  N  69  
GYA  C8   H26  SING  N  N  70  
GYA  N1   H27  SING  N  N  71  
GYA  N4   H28  SING  N  N  72  
GYA  O2   H29  SING  N  N  73  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GYA  SMILES            ACDLabs               12.01  "C3(=O)C(O)=C(C(=O)NC2Cc1cc(OC)c(cc1C2)OC)N=C(N3)C4CCCN4C(CSc5ccccc5Cl)=O"  
GYA  InChI             InChI                 1.03   "InChI=1S/C28H29ClN4O6S/c1-38-20-12-15-10-17(11-16(15)13-21(20)39-2)30-27(36)24-25(35)28(37)32-26(31-24)19-7-5-9-33(19)23(34)14-40-22-8-4-3-6-18(22)29/h3-4,6,8,12-13,17,19,35H,5,7,9-11,14H2,1-2H3,(H,30,36)(H,31,32,37)/t19-/m0/s1"  
GYA  InChIKey          InChI                 1.03   DUURZOUMZXZFQN-IBGZPJMESA-N  
GYA  SMILES_CANONICAL  CACTVS                3.385  "COc1cc2CC(Cc2cc1OC)NC(=O)C3=C(O)C(=O)NC(=N3)[C@@H]4CCCN4C(=O)CSc5ccccc5Cl"  
GYA  SMILES            CACTVS                3.385  "COc1cc2CC(Cc2cc1OC)NC(=O)C3=C(O)C(=O)NC(=N3)[CH]4CCCN4C(=O)CSc5ccccc5Cl"  
GYA  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "COc1cc2c(cc1OC)CC(C2)NC(=O)C3=C(C(=O)NC(=N3)[C@@H]4CCCN4C(=O)CSc5ccccc5Cl)O"  
GYA  SMILES            "OpenEye OEToolkits"  2.0.6  "COc1cc2c(cc1OC)CC(C2)NC(=O)C3=C(C(=O)NC(=N3)C4CCCN4C(=O)CSc5ccccc5Cl)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GYA  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-[(2S)-1-{[(2-chlorophenyl)sulfanyl]acetyl}pyrrolidin-2-yl]-N-(5,6-dimethoxy-2,3-dihydro-1H-inden-2-yl)-5-hydroxy-6-oxo-1,6-dihydropyrimidine-4-carboxamide"  
GYA  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "2-[(2~{S})-1-[2-(2-chlorophenyl)sulfanylethanoyl]pyrrolidin-2-yl]-~{N}-(5,6-dimethoxy-2,3-dihydro-1~{H}-inden-2-yl)-5-oxidanyl-6-oxidanylidene-1~{H}-pyrimidine-4-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GYA  "Create component"  2017-06-28  RCSB  
GYA  "Initial release"   2018-01-03  RCSB  
GYA  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     GYA
_pdbx_chem_comp_synonyms.name        SRI-30026
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
