data_GVA
#

_chem_comp.id                                   GVA
_chem_comp.name                                 "5-{[AMINO(IMINO)METHYL]AMINO}PENTANOIC ACID"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C6 H13 N3 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "5-GUANIDINOVALERIC ACID"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2006-10-12
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  ?
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       159.186
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GVA
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GVA  OB    OB    O  0  1  N  N  N  16.767  59.407  44.014   2.519   1.866  -0.180  OB    GVA   1  
GVA  C     C     C  0  1  N  N  N  15.891  60.179  44.453   2.025   0.768  -0.401  C     GVA   2  
GVA  OA    OA    O  0  1  N  N  N  14.881  59.746  45.059   2.700  -0.398  -0.247  OA    GVA   3  
GVA  CA    CA    C  0  1  N  N  N  16.086  61.667  44.220   0.605   0.561  -0.865  CA    GVA   4  
GVA  CB    CB    C  0  1  N  N  N  15.120  62.533  45.030  -0.134   1.878  -1.086  CB    GVA   5  
GVA  CG    CG    C  0  1  N  N  N  15.489  62.582  46.511  -1.598   1.665  -1.491  CG    GVA   6  
GVA  CD    CD    C  0  1  N  N  N  14.613  63.565  47.273  -2.343   2.977  -1.719  CD    GVA   7  
GVA  NE    NE    N  0  1  N  N  N  14.939  63.566  48.689  -3.724   2.782  -2.066  NE    GVA   8  
GVA  CZ    CZ    C  0  1  N  N  N  14.285  64.320  49.579  -4.682   3.759  -2.270  CZ    GVA   9  
GVA  NH2   NH2   N  0  1  N  N  N  13.093  64.840  49.279  -4.276   5.062  -2.128  NH2   GVA  10  
GVA  NH1   NH1   N  0  1  N  N  N  14.798  64.540  50.716  -5.913   3.452  -2.583  NH1   GVA  11  
GVA  HOA   HOA   H  0  1  N  N  N  14.922  58.798  45.107   3.628  -0.305   0.057  HOA   GVA  12  
GVA  HA1   1HA   H  0  1  N  N  N  17.113  61.930  44.512   0.086  -0.051  -0.118  HA1   GVA  13  
GVA  HA2   2HA   H  0  1  N  N  N  15.891  61.863  43.155   0.625  -0.034  -1.785  HA2   GVA  14  
GVA  HB1   1HB   H  0  1  N  N  N  15.147  63.557  44.629   0.383   2.472  -1.847  HB1   GVA  15  
GVA  HB2   2HB   H  0  1  N  N  N  14.117  62.090  44.946  -0.102   2.453  -0.153  HB2   GVA  16  
GVA  HG1   1HG   H  0  1  N  N  N  15.355  61.579  46.943  -2.110   1.112  -0.694  HG1   GVA  17  
GVA  HG2   2HG   H  0  1  N  N  N  16.535  62.913  46.596  -1.651   1.050  -2.397  HG2   GVA  18  
GVA  HD1   1HD   H  0  1  N  N  N  14.775  64.575  46.869  -1.878   3.568  -2.514  HD1   GVA  19  
GVA  HD2   2HD   H  0  1  N  N  N  13.562  63.262  47.155  -2.329   3.573  -0.800  HD2   GVA  20  
GVA  HNE   HNE   H  0  1  N  N  N  15.682  62.979  49.011  -4.026   1.813  -2.172  HNE   GVA  21  
GVA  HH21  1HH2  H  0  0  N  N  N  12.740  65.375  50.047  -3.324   5.310  -1.887  HH21  GVA  22  
GVA  HH22  2HH2  H  0  0  N  N  N  12.619  64.713  48.408  -4.926   5.829  -2.263  HH22  GVA  23  
GVA  HNH1  HNH1  H  0  0  N  N  N  15.686  64.087  50.794  -5.991   2.430  -2.636  HNH1  GVA  24  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GVA  OB   C     DOUB  N  N   1  
GVA  C    OA    SING  N  N   2  
GVA  C    CA    SING  N  N   3  
GVA  OA   HOA   SING  N  N   4  
GVA  CA   CB    SING  N  N   5  
GVA  CA   HA1   SING  N  N   6  
GVA  CA   HA2   SING  N  N   7  
GVA  CB   CG    SING  N  N   8  
GVA  CB   HB1   SING  N  N   9  
GVA  CB   HB2   SING  N  N  10  
GVA  CG   CD    SING  N  N  11  
GVA  CG   HG1   SING  N  N  12  
GVA  CG   HG2   SING  N  N  13  
GVA  CD   NE    SING  N  N  14  
GVA  CD   HD1   SING  N  N  15  
GVA  CD   HD2   SING  N  N  16  
GVA  NE   CZ    SING  N  N  17  
GVA  NE   HNE   SING  N  N  18  
GVA  CZ   NH2   SING  N  N  19  
GVA  CZ   NH1   DOUB  N  Z  20  
GVA  NH2  HH21  SING  N  N  21  
GVA  NH2  HH22  SING  N  N  22  
GVA  NH1  HNH1  SING  N  N  23  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GVA  SMILES            ACDLabs               10.04  "O=C(O)CCCCNC(=[N@H])N"  
GVA  SMILES_CANONICAL  CACTVS                3.341  "NC(=N)NCCCCC(O)=O"  
GVA  SMILES            CACTVS                3.341  "NC(=N)NCCCCC(O)=O"  
GVA  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "[H]/N=C(/N)\NCCCCC(=O)O"  
GVA  SMILES            "OpenEye OEToolkits"  1.5.0  "[H]N=C(N)NCCCCC(=O)O"  
GVA  InChI             InChI                 1.03   "InChI=1S/C6H13N3O2/c7-6(8)9-4-2-1-3-5(10)11/h1-4H2,(H,10,11)(H4,7,8,9)"  
GVA  InChIKey          InChI                 1.03   UKUBCVAQGIZRHL-UHFFFAOYSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GVA  "SYSTEMATIC NAME"  ACDLabs               10.04  "5-carbamimidamidopentanoic acid"  
GVA  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "5-carbamimidamidopentanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GVA  "Create component"   2006-10-12  RCSB  
GVA  "Modify descriptor"  2011-06-04  RCSB  
GVA  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     GVA
_pdbx_chem_comp_synonyms.name        "5-GUANIDINOVALERIC ACID"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
