data_EIA
# 
_chem_comp.id                                    EIA 
_chem_comp.name                                  "(1Z,3E,5S,7R,8R,10R,11R,12S,15R,16S,18Z,25S)-11-ethyl-2-hydroxy-10-methyl-21,26-diazapentacyclo[23.2.1.05,16.07,15.08,12]octacosa-1(2),3,13,18-tetraene-20,27,28-trione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H38 N2 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ikarugamycin 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-14 
_chem_comp.pdbx_modified_date                    2023-11-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        478.623 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     EIA 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8JOO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBC 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
EIA C10  C1  C 0 1 N N N N N N -22.217 -0.529 18.870 -22.217 -0.529 18.870 C10  EIA 1  
EIA C13  C2  C 0 1 N N N N N N -19.854 -0.061 24.747 -19.854 -0.061 24.747 C13  EIA 2  
EIA C17  C3  C 0 1 N N N N N N -23.761 2.933  18.659 -23.761 2.933  18.659 C17  EIA 3  
EIA C20  C4  C 0 1 N N N N N N -22.844 4.398  16.826 -22.844 4.398  16.826 C20  EIA 4  
EIA C21  C5  C 0 1 N N N N N N -22.689 3.660  17.910 -22.689 3.660  17.910 C21  EIA 5  
EIA C22  C6  C 0 1 N N N N N N -24.910 5.420  12.786 -24.910 5.420  12.786 C22  EIA 6  
EIA C28  C7  C 0 1 N N N N N N -23.774 0.940  15.802 -23.774 0.940  15.802 C28  EIA 7  
EIA C12  C8  C 0 1 N N S N N N -23.263 1.560  19.139 -23.263 1.560  19.139 C12  EIA 8  
EIA C16  C9  C 0 1 N N N N N N -23.672 0.316  16.957 -23.672 0.316  16.957 C16  EIA 9  
EIA C19  C10 C 0 1 N N N N N N -24.127 4.683  16.153 -24.127 4.683  16.153 C19  EIA 10 
EIA C23  C11 C 0 1 N N N N N N -25.108 5.984  14.182 -25.108 5.984  14.182 C23  EIA 11 
EIA C25  C12 C 0 1 N N N N N N -25.532 4.057  12.536 -25.532 4.057  12.536 C25  EIA 12 
EIA C27  C13 C 0 1 N N N N N N -24.728 0.645  14.760 -24.728 0.645  14.760 C27  EIA 13 
EIA C29  C14 C 0 1 N N N N N N -25.784 1.051  12.533 -25.784 1.051  12.533 C29  EIA 14 
EIA C30  C15 C 0 1 N N N N N N -24.776 1.299  13.587 -24.776 1.299  13.587 C30  EIA 15 
EIA C32  C16 C 0 1 N N S N N N -24.593 2.984  11.967 -24.593 2.984  11.967 C32  EIA 16 
EIA N24  N1  N 0 1 N N N N N N -24.047 5.512  15.048 -24.047 5.512  15.048 N24  EIA 17 
EIA C1   C17 C 0 1 N N R N N N -20.669 -0.644 23.588 -20.669 -0.644 23.588 C1   EIA 18 
EIA C11  C18 C 0 1 N N S N N N -22.677 0.658  18.017 -22.677 0.658  18.017 C11  EIA 19 
EIA C14  C19 C 0 1 N N N N N N -20.149 -0.700 26.087 -20.149 -0.700 26.087 C14  EIA 20 
EIA C15  C20 C 0 1 N N N N N N -18.526 -2.035 23.134 -18.526 -2.035 23.134 C15  EIA 21 
EIA C2   C21 C 0 1 N N R N N N -20.020 -1.851 22.883 -20.020 -1.851 22.883 C2   EIA 22 
EIA C3   C22 C 0 1 N N N N N N -20.361 -1.677 21.392 -20.361 -1.677 21.392 C3   EIA 23 
EIA C33  C23 C 0 1 N N N N N N -23.866 2.305  13.100 -23.866 2.305  13.100 C33  EIA 24 
EIA C4   C24 C 0 1 N N R N N N -21.378 -0.550 21.278 -21.378 -0.550 21.278 C4   EIA 25 
EIA C5   C25 C 0 1 N N S N N N -20.874 0.348  22.422 -20.874 0.348  22.422 C5   EIA 26 
EIA C6   C26 C 0 1 N N R N N N -21.403 0.209  19.944 -21.403 0.209  19.944 C6   EIA 27 
EIA C7   C27 C 0 1 N N R N N N -22.049 1.615  20.103 -22.049 1.615  20.103 C7   EIA 28 
EIA C8   C28 C 0 1 N N N N N N -22.294 2.067  21.516 -22.294 2.067  21.516 C8   EIA 29 
EIA C9   C29 C 0 1 N N N N N N -21.772 1.528  22.610 -21.772 1.528  22.610 C9   EIA 30 
EIA N31  N2  N 0 1 N N N N N N -25.577 1.989  11.588 -25.577 1.989  11.588 N31  EIA 31 
EIA O18  O1  O 0 1 N N N N N N -25.215 4.257  16.538 -25.215 4.257  16.538 O18  EIA 32 
EIA O26  O2  O 0 1 N N N N N N -25.641 -0.305 15.029 -25.641 -0.305 15.029 O26  EIA 33 
EIA O34  O3  O 0 1 N N N N N N -26.677 0.201  12.539 -26.677 0.201  12.539 O34  EIA 34 
EIA O35  O4  O 0 1 N N N N N N -22.743 2.607  13.460 -22.743 2.607  13.460 O35  EIA 35 
EIA H10B H1  H 0 0 N N N N N N -23.069 -1.072 19.306 -23.069 -1.072 19.306 H10B EIA 36 
EIA H10A H2  H 0 0 N N N N N N -21.593 -1.227 18.294 -21.593 -1.227 18.294 H10A EIA 37 
EIA H13A H3  H 0 0 N N N N N N -18.786 -0.201 24.524 -18.786 -0.201 24.524 H13A EIA 38 
EIA H13B H4  H 0 0 N N N N N N -20.075 1.014  24.820 -20.076 1.014  24.820 H13B EIA 39 
EIA H17B H5  H 0 0 N N N N N N -24.060 3.532  19.532 -24.060 3.532  19.531 H17B EIA 40 
EIA H17A H6  H 0 0 N N N N N N -24.628 2.790  17.998 -24.628 2.790  17.998 H17A EIA 41 
EIA HC20 H7  H 0 0 N N N N N N -21.954 4.831  16.394 -21.954 4.831  16.394 HC20 EIA 42 
EIA HC21 H8  H 0 0 N N N N N N -21.684 3.572  18.296 -21.684 3.572  18.296 HC21 EIA 43 
EIA H22B H9  H 0 0 N N N N N N -23.828 5.337  12.604 -23.828 5.337  12.604 H22B EIA 44 
EIA H22A H10 H 0 0 N N N N N N -25.349 6.129  12.069 -25.349 6.129  12.069 H22A EIA 45 
EIA HC28 H11 H 0 0 N N N N N N -23.080 1.747  15.617 -23.080 1.747  15.618 HC28 EIA 46 
EIA HC12 H12 H 0 0 N N N N N N -24.089 1.027  19.632 -24.089 1.027  19.632 HC12 EIA 47 
EIA HC16 H13 H 0 0 N N N N N N -24.354 -0.498 17.151 -24.354 -0.498 17.151 HC16 EIA 48 
EIA H23B H14 H 0 0 N N N N N N -25.086 7.083  14.140 -25.086 7.083  14.140 H23B EIA 49 
EIA H23A H15 H 0 0 N N N N N N -26.079 5.652  14.577 -26.079 5.652  14.577 H23A EIA 50 
EIA H25B H16 H 0 0 N N N N N N -26.361 4.190  11.825 -26.361 4.190  11.825 H25B EIA 51 
EIA H25A H17 H 0 0 N N N N N N -25.926 3.686  13.494 -25.926 3.686  13.494 H25A EIA 52 
EIA HC32 H18 H 0 0 N N N N N N -23.942 3.342  11.156 -23.942 3.342  11.156 HC32 EIA 53 
EIA HN24 H19 H 0 0 N N N N N N -23.128 5.830  14.815 -23.128 5.830  14.814 HN24 EIA 54 
EIA HC1  H20 H 0 1 N N N N N N -21.656 -0.948 23.967 -21.656 -0.948 23.968 HC1  EIA 55 
EIA HC11 H21 H 0 0 N N N N N N -21.802 1.153  17.571 -21.802 1.153  17.570 HC11 EIA 56 
EIA H14B H22 H 0 0 N N N N N N -19.528 -0.229 26.863 -19.528 -0.229 26.863 H14B EIA 57 
EIA H14C H23 H 0 0 N N N N N N -21.212 -0.560 26.334 -21.212 -0.560 26.334 H14C EIA 58 
EIA H14A H24 H 0 0 N N N N N N -19.922 -1.775 26.038 -19.922 -1.775 26.038 H14A EIA 59 
EIA H15C H25 H 0 0 N N N N N N -18.347 -2.154 24.213 -18.347 -2.154 24.213 H15C EIA 60 
EIA H15B H26 H 0 0 N N N N N N -18.173 -2.931 22.603 -18.173 -2.931 22.603 H15B EIA 61 
EIA H15A H27 H 0 0 N N N N N N -17.981 -1.153 22.767 -17.981 -1.153 22.767 H15A EIA 62 
EIA HC2  H28 H 0 1 N N N N N N -20.533 -2.757 23.237 -20.533 -2.757 23.237 HC2  EIA 63 
EIA HC3A H29 H 0 0 N N N N N N -20.789 -2.609 20.994 -20.789 -2.609 20.994 HC3A EIA 64 
EIA HC3B H30 H 0 0 N N N N N N -19.453 -1.420 20.827 -19.452 -1.420 20.827 HC3B EIA 65 
EIA HC4  H31 H 0 1 N N N N N N -22.385 -0.925 21.514 -22.385 -0.925 21.514 HC4  EIA 66 
EIA HC5  H32 H 0 1 N N N N N N -19.881 0.722  22.132 -19.881 0.722  22.132 HC5  EIA 67 
EIA HC6  H33 H 0 1 N N N N N N -20.371 0.334  19.585 -20.371 0.334  19.585 HC6  EIA 68 
EIA HC7  H34 H 0 1 N N N N N N -21.339 2.329  19.661 -21.339 2.329  19.661 HC7  EIA 69 
EIA HC8  H35 H 0 1 N N N N N N -22.957 2.909  21.653 -22.957 2.909  21.653 HC8  EIA 70 
EIA HC9  H36 H 0 1 N N N N N N -21.986 1.924  23.592 -21.986 1.924  23.592 HC9  EIA 71 
EIA HN31 H37 H 0 0 N N N N N N -26.056 1.998  10.710 -26.056 1.998  10.710 HN31 EIA 72 
EIA HO26 H38 H 0 0 N N N N N N -26.229 -0.399 14.289 -26.229 -0.399 14.288 HO26 EIA 73 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
EIA N31 C32  SING N N 1  
EIA N31 C29  SING N N 2  
EIA C32 C25  SING N N 3  
EIA C32 C33  SING N N 4  
EIA C29 O34  DOUB N N 5  
EIA C29 C30  SING N N 6  
EIA C25 C22  SING N N 7  
EIA C22 C23  SING N N 8  
EIA C33 O35  DOUB N N 9  
EIA C33 C30  SING N N 10 
EIA C30 C27  DOUB N Z 11 
EIA C23 N24  SING N N 12 
EIA C27 O26  SING N N 13 
EIA C27 C28  SING N N 14 
EIA N24 C19  SING N N 15 
EIA C28 C16  DOUB N E 16 
EIA C19 O18  DOUB N N 17 
EIA C19 C20  SING N N 18 
EIA C20 C21  DOUB N Z 19 
EIA C16 C11  SING N N 20 
EIA C21 C17  SING N N 21 
EIA C11 C10  SING N N 22 
EIA C11 C12  SING N N 23 
EIA C17 C12  SING N N 24 
EIA C10 C6   SING N N 25 
EIA C12 C7   SING N N 26 
EIA C6  C7   SING N N 27 
EIA C6  C4   SING N N 28 
EIA C7  C8   SING N N 29 
EIA C4  C3   SING N N 30 
EIA C4  C5   SING N N 31 
EIA C3  C2   SING N N 32 
EIA C8  C9   DOUB N N 33 
EIA C5  C9   SING N N 34 
EIA C5  C1   SING N N 35 
EIA C2  C15  SING N N 36 
EIA C2  C1   SING N N 37 
EIA C1  C13  SING N N 38 
EIA C13 C14  SING N N 39 
EIA C10 H10B SING N N 40 
EIA C10 H10A SING N N 41 
EIA C13 H13A SING N N 42 
EIA C13 H13B SING N N 43 
EIA C17 H17B SING N N 44 
EIA C17 H17A SING N N 45 
EIA C20 HC20 SING N N 46 
EIA C21 HC21 SING N N 47 
EIA C22 H22B SING N N 48 
EIA C22 H22A SING N N 49 
EIA C28 HC28 SING N N 50 
EIA C12 HC12 SING N N 51 
EIA C16 HC16 SING N N 52 
EIA C23 H23B SING N N 53 
EIA C23 H23A SING N N 54 
EIA C25 H25B SING N N 55 
EIA C25 H25A SING N N 56 
EIA C32 HC32 SING N N 57 
EIA N24 HN24 SING N N 58 
EIA C1  HC1  SING N N 59 
EIA C11 HC11 SING N N 60 
EIA C14 H14B SING N N 61 
EIA C14 H14C SING N N 62 
EIA C14 H14A SING N N 63 
EIA C15 H15C SING N N 64 
EIA C15 H15B SING N N 65 
EIA C15 H15A SING N N 66 
EIA C2  HC2  SING N N 67 
EIA C3  HC3A SING N N 68 
EIA C3  HC3B SING N N 69 
EIA C4  HC4  SING N N 70 
EIA C5  HC5  SING N N 71 
EIA C6  HC6  SING N N 72 
EIA C7  HC7  SING N N 73 
EIA C8  HC8  SING N N 74 
EIA C9  HC9  SING N N 75 
EIA N31 HN31 SING N N 76 
EIA O26 HO26 SING N N 77 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
EIA InChI            InChI                1.06  "InChI=1S/C29H38N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8-12,16-24,32H,3,5-7,13-15H2,1-2H3,(H,30,33)(H,31,35)/b8-4-,12-9+,27-25-/t16-,17-,18-,19+,20+,21-,22+,23+,24+/m1/s1" 
EIA InChIKey         InChI                1.06  GHXZHWYUSAWISC-KZRBWAKNSA-N                                                                                                                                                                                                                                  
EIA SMILES_CANONICAL CACTVS               3.385 "CC[C@@H]1[C@H](C)C[C@@H]2[C@H]3C[C@H]4/C=C/C(=C5/C(=O)N[C@@H](CCCNC(=O)\C=C/C[C@@H]4[C@H]3C=C[C@@H]12)C5=O)O"                                                                                                                                               
EIA SMILES           CACTVS               3.385 "CC[CH]1[CH](C)C[CH]2[CH]3C[CH]4C=CC(=C5C(=O)N[CH](CCCNC(=O)C=CC[CH]4[CH]3C=C[CH]12)C5=O)O"                                                                                                                                                                  
EIA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@@H]1[C@@H](C[C@H]2[C@H]1C=C[C@H]3[C@@H]2C[C@@H]/4[C@@H]3C/C=C\C(=O)NCCC[C@H]5C(=O)/C(=C(\C=C4)/O)/C(=O)N5)C"                                                                                                                                           
EIA SMILES           "OpenEye OEToolkits" 2.0.7 "CCC1C(CC2C1C=CC3C2CC4C3CC=CC(=O)NCCCC5C(=O)C(=C(C=C4)O)C(=O)N5)C"                                                                                                                                                                                           
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
EIA "Create component" 2023-06-14 PDBC 
EIA "Initial release"  2023-11-15 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      EIA 
_pdbx_chem_comp_synonyms.name         ikarugamycin 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
