data_D6A
#

_chem_comp.id                                   D6A
_chem_comp.name                                 "(3R,5R)-5-{3-[4-(trifluoromethyl)phenyl]-1,2,4-oxadiazol-5-yl}pyrrolidin-3-ol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C13 H12 F3 N3 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-10-20
_chem_comp.pdbx_modified_date                   2020-04-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       299.248
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    D6A
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5QB7
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
D6A  C4   C1   C  0  1  Y  N  N  -3.876   1.958  10.721  -1.866   1.352  -0.194  C4   D6A   1  
D6A  C5   C2   C  0  1  Y  N  N  -2.762   1.137  10.565  -1.043   0.257   0.058  C5   D6A   2  
D6A  C6   C3   C  0  1  Y  N  N  -1.456   1.717  10.230   0.430   0.427   0.107  C6   D6A   3  
D6A  N1   N1   N  0  1  Y  N  N  -0.364   0.998  10.198   1.089   1.543  -0.066  N1   D6A   4  
D6A  C7   C4   C  0  1  Y  N  N  -0.028   3.104   9.612   2.509   0.052   0.293  C7   D6A   5  
D6A  C8   C5   C  0  1  N  N  R   0.719   4.196   8.894   3.854  -0.597   0.489  C8   D6A   6  
D6A  N2   N2   N  0  1  N  N  N   2.158   4.240   9.328   4.759   0.294   1.260  N2   D6A   7  
D6A  C9   C6   C  0  1  N  N  N   0.198   5.614   9.096   4.587  -0.759  -0.867  C9   D6A   8  
D6A  C10  C7   C  0  1  N  N  R   1.092   6.282  10.125   6.074  -0.819  -0.451  C10  D6A   9  
D6A  C11  C8   C  0  1  N  N  N   2.415   5.546  10.036   6.133  -0.147   0.933  C11  D6A  10  
D6A  C12  C9   C  0  1  N  N  N  -6.619  -0.539  11.403  -5.288  -0.235  -0.089  C12  D6A  11  
D6A  F2   F1   F  0  1  N  N  N  -7.486  -0.217  10.470  -5.836   0.700  -0.973  F2   D6A  12  
D6A  F    F2   F  0  1  N  N  N  -6.609  -1.861  11.456  -5.823  -0.040   1.189  F    D6A  13  
D6A  F1   F3   F  0  1  N  N  N  -7.149  -0.116  12.536  -5.593  -1.528  -0.530  F1   D6A  14  
D6A  C2   C10  C  0  1  Y  N  N  -5.273   0.044  11.147  -3.792  -0.062  -0.039  C2   D6A  15  
D6A  C1   C11  C  0  1  Y  N  N  -4.157  -0.773  11.009  -2.980  -1.153   0.217  C1   D6A  16  
D6A  C3   C12  C  0  1  Y  N  N  -5.110   1.413  11.017  -3.236   1.188  -0.238  C3   D6A  17  
D6A  C    C13  C  0  1  Y  N  N  -2.915  -0.230  10.745  -1.609  -1.000   0.263  C    D6A  18  
D6A  O    O1   O  0  1  Y  N  N   0.627   1.932   9.788   2.281   1.344   0.037  O    D6A  19  
D6A  N    N3   N  0  1  Y  N  N  -1.270   3.051   9.913   1.343  -0.542   0.346  N    D6A  20  
D6A  O1   O2   O  0  1  N  N  N   0.592   5.990  11.430   6.880  -0.100  -1.387  O1   D6A  21  
D6A  H1   H1   H  0  1  N  N  N  -3.774   3.027  10.610  -1.433   2.329  -0.350  H1   D6A  22  
D6A  H2   H2   H  0  1  N  N  N   0.693   3.977   7.816   3.748  -1.561   0.986  H2   D6A  23  
D6A  H3   H3   H  0  1  N  N  N   2.345   3.479   9.949   4.619   1.260   1.005  H3   D6A  24  
D6A  H5   H5   H  0  1  N  N  N   0.238   6.168   8.147   4.286  -1.684  -1.360  H5   D6A  25  
D6A  H6   H6   H  0  1  N  N  N  -0.839   5.585   9.461   4.400   0.101  -1.511  H6   D6A  26  
D6A  H7   H7   H  0  1  N  N  N   1.207   7.359   9.932   6.407  -1.855  -0.384  H7   D6A  27  
D6A  H8   H8   H  0  1  N  N  N   2.808   5.355  11.046   6.800   0.714   0.900  H8   D6A  28  
D6A  H9   H9   H  0  1  N  N  N   3.141   6.145   9.467   6.481  -0.861   1.679  H9   D6A  29  
D6A  H10  H10  H  0  1  N  N  N  -4.262  -1.843  11.109  -3.420  -2.125   0.380  H10  D6A  30  
D6A  H11  H11  H  0  1  N  N  N  -5.961   2.065  11.149  -3.874   2.038  -0.429  H11  D6A  31  
D6A  H12  H12  H  0  1  N  N  N  -2.053  -0.877  10.678  -0.976  -1.853   0.459  H12  D6A  32  
D6A  H13  H13  H  0  1  N  N  N   1.145   6.404  12.082   7.824  -0.103  -1.177  H13  D6A  33  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
D6A  C8   C9   SING  N  N   1  
D6A  C8   N2   SING  N  N   2  
D6A  C8   C7   SING  N  N   3  
D6A  C9   C10  SING  N  N   4  
D6A  N2   C11  SING  N  N   5  
D6A  C7   O    SING  Y  N   6  
D6A  C7   N    DOUB  Y  N   7  
D6A  O    N1   SING  Y  N   8  
D6A  N    C6   SING  Y  N   9  
D6A  C11  C10  SING  N  N  10  
D6A  C10  O1   SING  N  N  11  
D6A  N1   C6   DOUB  Y  N  12  
D6A  C6   C5   SING  N  N  13  
D6A  F2   C12  SING  N  N  14  
D6A  C5   C4   DOUB  Y  N  15  
D6A  C5   C    SING  Y  N  16  
D6A  C4   C3   SING  Y  N  17  
D6A  C    C1   DOUB  Y  N  18  
D6A  C1   C2   SING  Y  N  19  
D6A  C3   C2   DOUB  Y  N  20  
D6A  C2   C12  SING  N  N  21  
D6A  C12  F    SING  N  N  22  
D6A  C12  F1   SING  N  N  23  
D6A  C4   H1   SING  N  N  24  
D6A  C8   H2   SING  N  N  25  
D6A  N2   H3   SING  N  N  26  
D6A  C9   H5   SING  N  N  27  
D6A  C9   H6   SING  N  N  28  
D6A  C10  H7   SING  N  N  29  
D6A  C11  H8   SING  N  N  30  
D6A  C11  H9   SING  N  N  31  
D6A  C1   H10  SING  N  N  32  
D6A  C3   H11  SING  N  N  33  
D6A  C    H12  SING  N  N  34  
D6A  O1   H13  SING  N  N  35  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
D6A  SMILES            ACDLabs               12.01  "c1cc(C(F)(F)F)ccc1c2noc(n2)C3CC(O)CN3"  
D6A  InChI             InChI                 1.03   "InChI=1S/C13H12F3N3O2/c14-13(15,16)8-3-1-7(2-4-8)11-18-12(21-19-11)10-5-9(20)6-17-10/h1-4,9-10,17,20H,5-6H2/t9-,10-/m1/s1"  
D6A  InChIKey          InChI                 1.03   BFYYUFJLDXZELT-NXEZZACHSA-N  
D6A  SMILES_CANONICAL  CACTVS                3.385  "O[C@H]1CN[C@H](C1)c2onc(n2)c3ccc(cc3)C(F)(F)F"  
D6A  SMILES            CACTVS                3.385  "O[CH]1CN[CH](C1)c2onc(n2)c3ccc(cc3)C(F)(F)F"  
D6A  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1cc(ccc1c2nc(on2)[C@H]3C[C@H](CN3)O)C(F)(F)F"  
D6A  SMILES            "OpenEye OEToolkits"  2.0.6  "c1cc(ccc1c2nc(on2)C3CC(CN3)O)C(F)(F)F"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
D6A  "SYSTEMATIC NAME"  ACDLabs               12.01  "(3R,5R)-5-{3-[4-(trifluoromethyl)phenyl]-1,2,4-oxadiazol-5-yl}pyrrolidin-3-ol"  
D6A  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(3~{R},5~{R})-5-[3-[4-(trifluoromethyl)phenyl]-1,2,4-oxadiazol-5-yl]pyrrolidin-3-ol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
D6A  "Create component"  2017-10-20  RCSB  
D6A  "Initial release"   2020-04-22  RCSB  
##
