data_D1A
# 
_chem_comp.id                                    D1A 
_chem_comp.name                                  "N-[4-[(E)-N-carbamimidamido-C-methyl-carbonimidoyl]phenyl]-7-nitro-1H-indole-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H17 N7 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-01-06 
_chem_comp.pdbx_modified_date                    2014-09-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        379.373 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     D1A 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2W7X 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
D1A O3   O3   O -1 1 N N N 49.465 -15.911 -3.970  -6.710 2.938  0.475  O3   D1A 1  
D1A N7   N7   N 1  1 N N N 48.834 -16.867 -3.509  -5.723 2.235  0.356  N7   D1A 2  
D1A O2   O2   O 0  1 N N N 49.103 -17.262 -2.375  -4.612 2.719  0.479  O2   D1A 3  
D1A C3   C3   C 0  1 Y N N 47.857 -17.519 -4.270  -5.873 0.791  0.066  C3   D1A 4  
D1A C2   C2   C 0  1 Y N N 47.199 -18.665 -3.824  -7.128 0.241  -0.068 C2   D1A 5  
D1A C4   C4   C 0  1 Y N N 47.550 -17.017 -5.523  -4.746 -0.013 -0.076 C4   D1A 6  
D1A N1   N1   N 0  1 Y N N 48.000 -15.946 -6.209  -3.396 0.238  -0.005 N1   D1A 7  
D1A C8   C8   C 0  1 Y N N 47.364 -15.838 -7.415  -2.712 -0.941 -0.229 C8   D1A 8  
D1A C7   C7   C 0  1 Y N N 46.491 -16.904 -7.537  -3.606 -1.942 -0.441 C7   D1A 9  
D1A C5   C5   C 0  1 Y N N 46.618 -17.627 -6.319  -4.905 -1.385 -0.351 C5   D1A 10 
D1A C6   C6   C 0  1 Y N N 45.955 -18.778 -5.899  -6.193 -1.922 -0.477 C6   D1A 11 
D1A C1   C1   C 0  1 Y N N 46.248 -19.292 -4.633  -7.282 -1.112 -0.340 C1   D1A 12 
D1A C9   C9   C 0  1 N N N 47.656 -14.812 -8.429  -1.249 -1.089 -0.236 C9   D1A 13 
D1A O1   O1   O 0  1 N N N 48.566 -14.018 -8.203  -0.749 -2.179 -0.444 O1   D1A 14 
D1A N2   N2   N 0  1 N N N 46.924 -14.825 -9.542  -0.462 -0.019 -0.011 N2   D1A 15 
D1A C10  C10  C 0  1 Y N N 47.101 -13.992 -10.653 0.922  -0.178 0.091  C10  D1A 16 
D1A C15  C15  C 0  1 Y N N 46.273 -14.218 -11.752 1.771  0.825  -0.361 C15  D1A 17 
D1A C14  C14  C 0  1 Y N N 46.385 -13.485 -12.901 3.136  0.671  -0.261 C14  D1A 18 
D1A C13  C13  C 0  1 Y N N 47.339 -12.489 -12.994 3.668  -0.495 0.295  C13  D1A 19 
D1A C12  C12  C 0  1 Y N N 48.194 -12.273 -11.911 2.811  -1.502 0.749  C12  D1A 20 
D1A C11  C11  C 0  1 Y N N 48.076 -13.018 -10.738 1.446  -1.338 0.651  C11  D1A 21 
D1A C16  C16  C 0  1 N N N 47.459 -11.704 -14.260 5.128  -0.664 0.403  C16  D1A 22 
D1A C17  C17  C 0  1 N N N 48.096 -10.346 -14.278 5.699  -1.923 1.004  C17  D1A 23 
D1A N3   N3   N 0  1 N N N 47.060 -12.228 -15.347 5.922  0.271  -0.019 N3   D1A 24 
D1A N4   N4   N 0  1 N N N 47.124 -11.616 -16.453 7.310  0.111  0.084  N4   D1A 25 
D1A C18  C18  C 0  1 N N N 46.699 -12.299 -17.513 8.153  1.103  -0.364 C18  D1A 26 
D1A N6   N6   N 0  1 N N N 46.711 -11.797 -18.725 9.516  0.945  -0.263 N6   D1A 27 
D1A N5   N5   N 0  1 N N N 46.348 -13.496 -17.367 7.659  2.192  -0.883 N5   D1A 28 
D1A H2   H2   H 0  1 N N N 47.426 -19.070 -2.849  -8.001 0.868  0.038  H2   D1A 29 
D1A H1   H1   H 0  1 N N N 45.738 -20.176 -4.279  -8.274 -1.528 -0.442 H1   D1A 30 
D1A HA   HA   H 0  1 N N N 48.704 -15.316 -5.880  -2.991 1.102  0.172  HA   D1A 31 
D1A H7   H7   H 0  1 N N N 45.851 -17.137 -8.376  -3.369 -2.976 -0.643 H7   D1A 32 
D1A H6   H6   H 0  1 N N N 45.231 -19.262 -6.537  -6.323 -2.974 -0.688 H6   D1A 33 
D1A HB   HB   H 0  1 N N N 46.180 -15.491 -9.588  -0.857 0.863  0.079  HB   D1A 34 
D1A H15  H15  H 0  1 N N N 45.523 -14.993 -11.694 1.360  1.727  -0.791 H15  D1A 35 
D1A H11  H11  H 0  1 N N N 48.740 -12.835 -9.906  0.783  -2.114 1.005  H11  D1A 36 
D1A H14  H14  H 0  1 N N N 45.729 -13.684 -13.735 3.796  1.451  -0.613 H14  D1A 37 
D1A H12  H12  H 0  1 N N N 48.960 -11.515 -11.983 3.217  -2.405 1.179  H12  D1A 38 
D1A H171 H171 H 0  0 N N N 48.081 -9.947  -15.303 5.855  -2.662 0.218  H171 D1A 39 
D1A H172 H172 H 0  0 N N N 47.537 -9.670  -13.614 6.651  -1.697 1.484  H172 D1A 40 
D1A H173 H173 H 0  0 N N N 49.137 -10.425 -13.930 5.003  -2.321 1.743  H173 D1A 41 
D1A H61N H61N H 0  0 N N N 46.445 -12.365 -19.504 9.883  0.135  0.124  H61N D1A 42 
D1A H62N H62N H 0  0 N N N 46.986 -10.847 -18.870 10.109 1.645  -0.578 H62N D1A 43 
D1A H5N  H5N  H 0  1 N N N 46.113 -13.926 -18.239 8.253  2.891  -1.199 H5N  D1A 44 
D1A H4N  H4N  H 0  1 N N N 47.471 -10.681 -16.525 7.678  -0.700 0.470  H4N  D1A 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
D1A O3  N7   SING N N 1  
D1A N7  O2   DOUB N N 2  
D1A N7  C3   SING N N 3  
D1A C3  C2   SING Y N 4  
D1A C3  C4   DOUB Y N 5  
D1A C2  C1   DOUB Y N 6  
D1A C4  N1   SING Y N 7  
D1A C4  C5   SING Y N 8  
D1A N1  C8   SING Y N 9  
D1A C8  C7   DOUB Y N 10 
D1A C8  C9   SING N N 11 
D1A C7  C5   SING Y N 12 
D1A C5  C6   DOUB Y N 13 
D1A C6  C1   SING Y N 14 
D1A C9  O1   DOUB N N 15 
D1A C9  N2   SING N N 16 
D1A N2  C10  SING N N 17 
D1A C10 C15  SING Y N 18 
D1A C10 C11  DOUB Y N 19 
D1A C15 C14  DOUB Y N 20 
D1A C14 C13  SING Y N 21 
D1A C13 C12  DOUB Y N 22 
D1A C13 C16  SING N N 23 
D1A C12 C11  SING Y N 24 
D1A C16 C17  SING N N 25 
D1A C16 N3   DOUB N E 26 
D1A N3  N4   SING N N 27 
D1A N4  C18  SING N N 28 
D1A C18 N6   SING N N 29 
D1A C18 N5   DOUB N N 30 
D1A C2  H2   SING N N 31 
D1A C1  H1   SING N N 32 
D1A N1  HA   SING N N 33 
D1A C7  H7   SING N N 34 
D1A C6  H6   SING N N 35 
D1A N2  HB   SING N N 36 
D1A C15 H15  SING N N 37 
D1A C11 H11  SING N N 38 
D1A C14 H14  SING N N 39 
D1A C12 H12  SING N N 40 
D1A C17 H171 SING N N 41 
D1A C17 H172 SING N N 42 
D1A C17 H173 SING N N 43 
D1A N6  H61N SING N N 44 
D1A N6  H62N SING N N 45 
D1A N5  H5N  SING N N 46 
D1A N4  H4N  SING N N 47 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
D1A SMILES           ACDLabs              12.01 "[O-][N+](=O)c1cccc2c1nc(c2)C(=O)Nc3ccc(\C(=N\NC(=[N@H])N)C)cc3"                                                                                       
D1A InChI            InChI                1.03  "InChI=1S/C18H17N7O3/c1-10(23-24-18(19)20)11-5-7-13(8-6-11)21-17(26)14-9-12-3-2-4-15(25(27)28)16(12)22-14/h2-9,22H,1H3,(H,21,26)(H4,19,20,24)/b23-10+" 
D1A InChIKey         InChI                1.03  ZKHRFTLMLVMQMS-AUEPDCJTSA-N                                                                                                                            
D1A SMILES_CANONICAL CACTVS               3.385 "CC(=N\NC(N)=N)/c1ccc(NC(=O)c2[nH]c3c(cccc3[N+]([O-])=O)c2)cc1"                                                                                        
D1A SMILES           CACTVS               3.385 "CC(=NNC(N)=N)c1ccc(NC(=O)c2[nH]c3c(cccc3[N+]([O-])=O)c2)cc1"                                                                                          
D1A SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "[H]/N=C(\N)/N/N=C(\C)/c1ccc(cc1)NC(=O)c2cc3cccc(c3[nH]2)[N+](=O)[O-]"                                                                                 
D1A SMILES           "OpenEye OEToolkits" 1.9.2 "CC(=NNC(=N)N)c1ccc(cc1)NC(=O)c2cc3cccc(c3[nH]2)[N+](=O)[O-]"                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
D1A "SYSTEMATIC NAME" ACDLabs              12.01 "N-{4-[(1E)-1-(2-carbamimidoylhydrazinylidene)ethyl]phenyl}-7-nitro-1H-indole-2-carboxamide" 
D1A "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "N-[4-[(E)-N-carbamimidamido-C-methyl-carbonimidoyl]phenyl]-7-nitro-1H-indole-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
D1A "Create component"     2009-01-06 EBI  
D1A "Modify aromatic_flag" 2011-06-04 RCSB 
D1A "Modify descriptor"    2011-06-04 RCSB 
D1A "Other modification"   2012-08-08 EBI  
D1A "Modify descriptor"    2014-09-05 RCSB 
# 
