data_B7A
#

_chem_comp.id                                   B7A
_chem_comp.name                                 "2'-deoxy-5-formyluridine 5'-(tetrahydrogen triphosphate)"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H15 N2 O15 P3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        5-FodUTP
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-08-03
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       496.152
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    B7A
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5WO0
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
B7A  C10  C1   C  0  1  N  N  R  -12.645   6.279  64.412   1.824   2.131   0.816  C10  B7A   1  
B7A  C26  C2   C  0  1  N  N  N   -8.821   7.580  62.052   4.670  -0.134  -0.949  C26  B7A   2  
B7A  C01  C3   C  0  1  N  N  N   -7.236   6.546  65.889   6.775  -2.975   1.316  C01  B7A   3  
B7A  O02  O1   O  0  1  N  N  N   -7.860   6.704  66.917   7.469  -3.798   0.756  O02  B7A   4  
B7A  C03  C4   C  0  1  N  N  N   -7.772   6.898  64.604   6.040  -1.983   0.533  C03  B7A   5  
B7A  C04  C5   C  0  1  N  N  N   -9.111   6.865  64.334   5.241  -1.035   1.151  C04  B7A   6  
B7A  N05  N1   N  0  1  N  N  N   -9.631   7.211  63.096   4.575  -0.131   0.390  N05  B7A   7  
B7A  C06  C6   C  0  1  N  N  R  -11.057   7.121  62.875   3.731   0.872   1.044  C06  B7A   8  
B7A  C07  C7   C  0  1  N  N  N  -11.546   5.751  62.418   4.254   2.297   0.745  C07  B7A   9  
B7A  C08  C8   C  0  1  N  N  S  -11.989   5.077  63.708   2.970   3.143   0.592  C08  B7A  10  
B7A  O09  O2   O  0  1  N  N  N  -12.908   4.029  63.417   2.928   4.173   1.582  O09  B7A  11  
B7A  C11  C9   C  0  1  N  N  N  -12.823   6.102  65.924   0.650   2.441  -0.115  C11  B7A  12  
B7A  O12  O3   O  0  1  N  N  N  -11.500   5.846  66.416  -0.428   1.545   0.163  O12  B7A  13  
B7A  P13  P1   P  0  1  N  N  N  -11.366   4.708  67.572  -1.828   1.585  -0.630  P13  B7A  14  
B7A  O14  O4   O  0  1  N  N  N  -12.530   4.850  68.529  -1.581   1.201  -2.174  O14  B7A  15  
B7A  O15  O5   O  0  1  N  N  N   -9.978   4.815  68.162  -2.404   2.945  -0.546  O15  B7A  16  
B7A  O16  O6   O  0  1  N  N  N  -11.442   3.286  66.776  -2.849   0.528   0.029  O16  B7A  17  
B7A  P17  P2   P  0  1  N  N  N  -12.627   2.222  66.613  -4.438   0.296  -0.073  P17  B7A  18  
B7A  O18  O7   O  0  1  N  N  N  -12.610   1.769  65.167  -4.859   0.377  -1.489  O18  B7A  19  
B7A  O19  O8   O  0  1  N  N  N  -13.984   2.658  67.054  -5.202   1.429   0.780  O19  B7A  20  
B7A  O20  O9   O  0  1  N  N  N  -12.116   0.952  67.496  -4.807  -1.157   0.514  O20  B7A  21  
B7A  P21  P3   P  0  1  N  N  N  -12.306   0.657  69.059  -6.069  -2.143   0.347  P21  B7A  22  
B7A  O22  O10  O  0  1  N  N  N  -10.900   0.273  69.630  -7.307  -1.581   1.210  O22  B7A  23  
B7A  O23  O11  O  0  1  N  N  N  -13.297  -0.528  69.115  -6.454  -2.215  -1.080  O23  B7A  24  
B7A  O24  O12  O  0  1  N  N  N  -12.856   1.907  69.755  -5.674  -3.614   0.871  O24  B7A  25  
B7A  O25  O13  O  0  1  N  N  N  -11.757   7.390  64.093   2.397   0.845   0.492  O25  B7A  26  
B7A  O27  O14  O  0  1  N  N  N   -9.248   7.866  60.957   4.056   0.701  -1.583  O27  B7A  27  
B7A  N28  N2   N  0  1  N  N  N   -7.482   7.612  62.340   5.426  -1.026  -1.611  N28  B7A  28  
B7A  C29  C10  C  0  1  N  N  N   -6.852   7.290  63.540   6.126  -1.963  -0.938  C29  B7A  29  
B7A  O30  O15  O  0  1  N  N  N   -5.634   7.352  63.629   6.813  -2.773  -1.533  O30  B7A  30  
B7A  H1   H1   H  0  1  N  N  N  -13.632   6.453  63.960   1.499   2.150   1.856  H1   B7A  31  
B7A  H2   H2   H  0  1  N  N  N   -6.242   6.126  65.942   6.700  -2.976   2.394  H2   B7A  32  
B7A  H3   H3   H  0  1  N  N  N   -9.791   6.558  65.115   5.150  -1.015   2.227  H3   B7A  33  
B7A  H4   H4   H  0  1  N  N  N  -11.351   7.860  62.115   3.699   0.697   2.120  H4   B7A  34  
B7A  H5   H5   H  0  1  N  N  N  -12.388   5.849  61.717   4.857   2.665   1.576  H5   B7A  35  
B7A  H6   H6   H  0  1  N  N  N  -10.734   5.185  61.938   4.830   2.306  -0.180  H6   B7A  36  
B7A  H7   H7   H  0  1  N  N  N  -11.120   4.722  64.281   2.911   3.571  -0.409  H7   B7A  37  
B7A  H8   H8   H  0  1  N  N  N  -12.769   3.309  64.021   3.659   4.803   1.525  H8   B7A  38  
B7A  H9   H9   H  0  1  N  N  N  -13.235   7.016  66.376   0.320   3.467   0.046  H9   B7A  39  
B7A  H10  H10  H  0  1  N  N  N  -13.489   5.253  66.140   0.966   2.319  -1.151  H10  B7A  40  
B7A  H11  H11  H  0  1  N  N  N  -12.202   4.993  69.409  -1.204   0.320  -2.305  H11  B7A  41  
B7A  H12  H12  H  0  1  N  N  N  -14.596   2.569  66.333  -4.974   1.434   1.719  H12  B7A  42  
B7A  H13  H13  H  0  1  N  N  N  -10.909  -0.634  69.913  -7.125  -1.507   2.157  H13  B7A  43  
B7A  H14  H14  H  0  1  N  N  N  -13.722   1.723  70.100  -6.388  -4.261   0.801  H14  B7A  44  
B7A  H15  H15  H  0  1  N  N  N   -6.881   7.903  61.595   5.469  -0.995  -2.580  H15  B7A  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
B7A  O27  C26  DOUB  N  N   1  
B7A  C26  N28  SING  N  N   2  
B7A  C26  N05  SING  N  N   3  
B7A  N28  C29  SING  N  N   4  
B7A  C07  C06  SING  N  N   5  
B7A  C07  C08  SING  N  N   6  
B7A  C06  N05  SING  N  N   7  
B7A  C06  O25  SING  N  N   8  
B7A  N05  C04  SING  N  N   9  
B7A  O09  C08  SING  N  N  10  
B7A  C29  O30  DOUB  N  N  11  
B7A  C29  C03  SING  N  N  12  
B7A  C08  C10  SING  N  N  13  
B7A  O25  C10  SING  N  N  14  
B7A  C04  C03  DOUB  N  N  15  
B7A  C10  C11  SING  N  N  16  
B7A  C03  C01  SING  N  N  17  
B7A  O18  P17  DOUB  N  N  18  
B7A  C01  O02  DOUB  N  N  19  
B7A  C11  O12  SING  N  N  20  
B7A  O12  P13  SING  N  N  21  
B7A  P17  O16  SING  N  N  22  
B7A  P17  O19  SING  N  N  23  
B7A  P17  O20  SING  N  N  24  
B7A  O16  P13  SING  N  N  25  
B7A  O20  P21  SING  N  N  26  
B7A  P13  O15  DOUB  N  N  27  
B7A  P13  O14  SING  N  N  28  
B7A  P21  O23  DOUB  N  N  29  
B7A  P21  O22  SING  N  N  30  
B7A  P21  O24  SING  N  N  31  
B7A  C10  H1   SING  N  N  32  
B7A  C01  H2   SING  N  N  33  
B7A  C04  H3   SING  N  N  34  
B7A  C06  H4   SING  N  N  35  
B7A  C07  H5   SING  N  N  36  
B7A  C07  H6   SING  N  N  37  
B7A  C08  H7   SING  N  N  38  
B7A  O09  H8   SING  N  N  39  
B7A  C11  H9   SING  N  N  40  
B7A  C11  H10  SING  N  N  41  
B7A  O14  H11  SING  N  N  42  
B7A  O19  H12  SING  N  N  43  
B7A  O22  H13  SING  N  N  44  
B7A  O24  H14  SING  N  N  45  
B7A  N28  H15  SING  N  N  46  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
B7A  SMILES            ACDLabs               12.01  "C2(COP(=O)(O)OP(O)(OP(=O)(O)O)=O)C(CC(N1C(NC(C(C=O)=C1)=O)=O)O2)O"  
B7A  InChI             InChI                 1.03   "InChI=1S/C10H15N2O15P3/c13-3-5-2-12(10(16)11-9(5)15)8-1-6(14)7(25-8)4-24-29(20,21)27-30(22,23)26-28(17,18)19/h2-3,6-8,14H,1,4H2,(H,20,21)(H,22,23)(H,11,15,16)(H2,17,18,19)/t6-,7+,8+/m0/s1"  
B7A  InChIKey          InChI                 1.03   YCOXPTBWJXOXAV-XLPZGREQSA-N  
B7A  SMILES_CANONICAL  CACTVS                3.385  "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)N2C=C(C=O)C(=O)NC2=O"  
B7A  SMILES            CACTVS                3.385  "O[CH]1C[CH](O[CH]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)N2C=C(C=O)C(=O)NC2=O"  
B7A  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C1[C@@H]([C@H](O[C@H]1N2C=C(C(=O)NC2=O)C=O)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O"  
B7A  SMILES            "OpenEye OEToolkits"  2.0.6  "C1C(C(OC1N2C=C(C(=O)NC2=O)C=O)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
B7A  "SYSTEMATIC NAME"  ACDLabs               12.01  "2'-deoxy-5-formyluridine 5'-(tetrahydrogen triphosphate)"  
B7A  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "[[(2~{R},3~{S},5~{R})-5-[5-methanoyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
B7A  "Create component"  2017-08-03  RCSB  
B7A  "Modify synonyms"   2017-08-03  RCSB  
B7A  "Initial release"   2017-09-13  RCSB  
B7A  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     B7A
_pdbx_chem_comp_synonyms.name        5-FodUTP
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
