data_B6A
# 
_chem_comp.id                                    B6A 
_chem_comp.name                                  "[2-amino-1-(piperidin-4-ylmethyl)-1H-benzimidazol-6-yl](phenyl)methanone" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H22 N4 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-12-22 
_chem_comp.pdbx_modified_date                    2012-03-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        334.415 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     B6A 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3UPX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
B6A CAM CAM C 0 1 N N N 28.637 14.551 28.356 -2.684 2.548  0.521  CAM B6A 1  
B6A CAK CAK C 0 1 N N N 28.729 15.552 27.211 -3.261 3.356  -0.643 CAK B6A 2  
B6A NAQ NAQ N 0 1 N N N 29.482 16.725 27.674 -4.506 2.730  -1.106 NAQ B6A 3  
B6A CAL CAL C 0 1 N N N 28.710 17.442 28.685 -4.265 1.369  -1.601 CAL B6A 4  
B6A CAN CAN C 0 1 N N N 28.585 16.545 29.912 -3.718 0.502  -0.465 CAN B6A 5  
B6A CAX CAX C 0 1 N N N 27.946 15.190 29.553 -2.415 1.114  0.056  CAX B6A 6  
B6A CAO CAO C 0 1 N N N 28.085 14.264 30.749 -1.895 0.285  1.232  CAO B6A 7  
B6A NAY NAY N 0 1 Y N N 27.263 13.048 30.640 -1.525 -1.052 0.762  NAY B6A 8  
B6A CAW CAW C 0 1 Y N N 25.949 12.967 30.782 -0.281 -1.446 0.292  CAW B6A 9  
B6A CAJ CAJ C 0 1 Y N N 24.964 13.907 31.049 0.924  -0.797 0.116  CAJ B6A 10 
B6A CAU CAU C 0 1 Y N N 27.740 11.847 30.390 -2.338 -2.147 0.708  CAU B6A 11 
B6A NAA NAA N 0 1 N N N 29.027 11.587 30.185 -3.659 -2.171 1.095  NAA B6A 12 
B6A NAP NAP N 0 1 Y N N 26.741 10.961 30.368 -1.673 -3.173 0.233  NAP B6A 13 
B6A CAV CAV C 0 1 Y N N 25.613 11.629 30.611 -0.404 -2.809 -0.043 CAV B6A 14 
B6A CAI CAI C 0 1 Y N N 24.285 11.229 30.720 0.701  -3.499 -0.557 CAI B6A 15 
B6A CAH CAH C 0 1 Y N N 23.292 12.171 30.991 1.888  -2.855 -0.731 CAH B6A 16 
B6A CAT CAT C 0 1 Y N N 23.638 13.508 31.158 2.019  -1.500 -0.394 CAT B6A 17 
B6A CAR CAR C 0 1 N N N 22.593 14.562 31.440 3.309  -0.815 -0.585 CAR B6A 18 
B6A OAB OAB O 0 1 N N N 22.773 15.715 31.043 4.221  -1.383 -1.156 OAB B6A 19 
B6A CAS CAS C 0 1 Y N N 21.338 14.200 32.224 3.496  0.562  -0.083 CAS B6A 20 
B6A CAF CAF C 0 1 Y N N 20.112 14.737 31.853 2.867  0.971  1.095  CAF B6A 21 
B6A CAD CAD C 0 1 Y N N 18.963 14.404 32.565 3.046  2.257  1.558  CAD B6A 22 
B6A CAC CAC C 0 1 Y N N 19.063 13.549 33.664 3.847  3.143  0.858  CAC B6A 23 
B6A CAE CAE C 0 1 Y N N 20.293 13.019 34.029 4.473  2.745  -0.310 CAE B6A 24 
B6A CAG CAG C 0 1 Y N N 21.430 13.344 33.314 4.307  1.459  -0.781 CAG B6A 25 
B6A H1  H1  H 0 1 N N N 28.060 13.674 28.028 -1.752 3.004  0.854  H1  B6A 26 
B6A H2  H2  H 0 1 N N N 29.650 14.235 28.646 -3.398 2.536  1.345  H2  B6A 27 
B6A H3  H3  H 0 1 N N N 27.718 15.858 26.904 -3.467 4.374  -0.312 H3  B6A 28 
B6A H4  H4  H 0 1 N N N 29.248 15.092 26.357 -2.541 3.380  -1.461 H4  B6A 29 
B6A H5  H5  H 0 1 N N N 30.351 16.427 28.070 -5.204 2.732  -0.377 H5  B6A 30 
B6A H7  H7  H 0 1 N N N 29.227 18.375 28.956 -5.200 0.944  -1.965 H7  B6A 31 
B6A H8  H8  H 0 1 N N N 27.710 17.678 28.292 -3.540 1.402  -2.414 H8  B6A 32 
B6A H9  H9  H 0 1 N N N 29.587 16.369 30.330 -4.448 0.457  0.343  H9  B6A 33 
B6A H10 H10 H 0 1 N N N 27.958 17.049 30.662 -3.525 -0.505 -0.837 H10 B6A 34 
B6A H11 H11 H 0 1 N N N 26.880 15.340 29.325 -1.672 1.123  -0.741 H11 B6A 35 
B6A H12 H12 H 0 1 N N N 29.140 13.966 30.839 -1.021 0.773  1.663  H12 B6A 36 
B6A H13 H13 H 0 1 N N N 27.780 14.812 31.653 -2.674 0.200  1.990  H13 B6A 37 
B6A H14 H14 H 0 1 N N N 25.228 14.947 31.172 1.021  0.248  0.371  H14 B6A 38 
B6A H15 H15 H 0 1 N N N 29.146 10.610 30.007 -4.079 -1.366 1.437  H15 B6A 39 
B6A H16 H16 H 0 1 N N N 29.351 12.111 29.397 -4.170 -2.992 1.025  H16 B6A 40 
B6A H17 H17 H 0 1 N N N 24.023 10.189 30.595 0.612  -4.544 -0.814 H17 B6A 41 
B6A H18 H18 H 0 1 N N N 22.260 11.864 31.071 2.737  -3.393 -1.127 H18 B6A 42 
B6A H19 H19 H 0 1 N N N 20.050 15.413 31.013 2.242  0.281  1.642  H19 B6A 43 
B6A H20 H20 H 0 1 N N N 18.004 14.803 32.270 2.561  2.575  2.469  H20 B6A 44 
B6A H21 H21 H 0 1 N N N 18.180 13.299 34.233 3.983  4.150  1.225  H21 B6A 45 
B6A H22 H22 H 0 1 N N N 20.362 12.351 34.874 5.096  3.441  -0.851 H22 B6A 46 
B6A H23 H23 H 0 1 N N N 22.387 12.934 33.602 4.800  1.149  -1.691 H23 B6A 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
B6A CAK NAQ SING N N 1  
B6A CAK CAM SING N N 2  
B6A NAQ CAL SING N N 3  
B6A CAM CAX SING N N 4  
B6A CAL CAN SING N N 5  
B6A CAX CAN SING N N 6  
B6A CAX CAO SING N N 7  
B6A NAA CAU SING N N 8  
B6A NAP CAU DOUB Y N 9  
B6A NAP CAV SING Y N 10 
B6A CAU NAY SING Y N 11 
B6A CAV CAI DOUB Y N 12 
B6A CAV CAW SING Y N 13 
B6A NAY CAO SING N N 14 
B6A NAY CAW SING Y N 15 
B6A CAI CAH SING Y N 16 
B6A CAW CAJ DOUB Y N 17 
B6A CAH CAT DOUB Y N 18 
B6A OAB CAR DOUB N N 19 
B6A CAJ CAT SING Y N 20 
B6A CAT CAR SING N N 21 
B6A CAR CAS SING N N 22 
B6A CAF CAS DOUB Y N 23 
B6A CAF CAD SING Y N 24 
B6A CAS CAG SING Y N 25 
B6A CAD CAC DOUB Y N 26 
B6A CAG CAE DOUB Y N 27 
B6A CAC CAE SING Y N 28 
B6A CAM H1  SING N N 29 
B6A CAM H2  SING N N 30 
B6A CAK H3  SING N N 31 
B6A CAK H4  SING N N 32 
B6A NAQ H5  SING N N 33 
B6A CAL H7  SING N N 34 
B6A CAL H8  SING N N 35 
B6A CAN H9  SING N N 36 
B6A CAN H10 SING N N 37 
B6A CAX H11 SING N N 38 
B6A CAO H12 SING N N 39 
B6A CAO H13 SING N N 40 
B6A CAJ H14 SING N N 41 
B6A NAA H15 SING N N 42 
B6A NAA H16 SING N N 43 
B6A CAI H17 SING N N 44 
B6A CAH H18 SING N N 45 
B6A CAF H19 SING N N 46 
B6A CAD H20 SING N N 47 
B6A CAC H21 SING N N 48 
B6A CAE H22 SING N N 49 
B6A CAG H23 SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
B6A SMILES           ACDLabs              12.01 "O=C(c1ccc2nc(N)n(c2c1)CC3CCNCC3)c4ccccc4"                                                                                              
B6A InChI            InChI                1.03  "InChI=1S/C20H22N4O/c21-20-23-17-7-6-16(19(25)15-4-2-1-3-5-15)12-18(17)24(20)13-14-8-10-22-11-9-14/h1-7,12,14,22H,8-11,13H2,(H2,21,23)" 
B6A InChIKey         InChI                1.03  CMCWMODUNMLBRJ-UHFFFAOYSA-N                                                                                                             
B6A SMILES_CANONICAL CACTVS               3.370 "Nc1nc2ccc(cc2n1CC3CCNCC3)C(=O)c4ccccc4"                                                                                                
B6A SMILES           CACTVS               3.370 "Nc1nc2ccc(cc2n1CC3CCNCC3)C(=O)c4ccccc4"                                                                                                
B6A SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)C(=O)c2ccc3c(c2)n(c(n3)N)CC4CCNCC4"                                                                                          
B6A SMILES           "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)C(=O)c2ccc3c(c2)n(c(n3)N)CC4CCNCC4"                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
B6A "SYSTEMATIC NAME" ACDLabs              12.01 "[2-amino-1-(piperidin-4-ylmethyl)-1H-benzimidazol-6-yl](phenyl)methanone" 
B6A "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[2-azanyl-3-(piperidin-4-ylmethyl)benzimidazol-5-yl]-phenyl-methanone"    
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
B6A "Create component" 2011-12-22 RCSB 
# 
