data_A7A
#

_chem_comp.id                                   A7A
_chem_comp.name                                 "(R)-{1-[(2,5-dimethylphenyl)methyl]-6-(1-methyl-1H-pyrazol-4-yl)-1H-benzimidazol-2-yl}(pyridin-4-yl)methanol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H25 N5 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-07-08
_chem_comp.pdbx_modified_date                   2019-12-20
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       423.510
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    A7A
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5WD3
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A7A  O    O1   O  0  1  N  N  N  -10.999   1.815  16.015   3.534   0.164   1.933  O    A7A   1  
A7A  C19  C1   C  0  1  N  N  R  -10.809   0.943  17.087   3.054   0.312   0.595  C19  A7A   2  
A7A  C20  C2   C  0  1  Y  N  N  -10.123  -0.286  16.569   3.780   1.450  -0.075  C20  A7A   3  
A7A  C24  C3   C  0  1  Y  N  N   -8.951  -0.749  17.143   4.087   1.398  -1.427  C24  A7A   4  
A7A  C23  C4   C  0  1  Y  N  N   -8.381  -1.946  16.698   4.754   2.460  -2.007  C23  A7A   5  
A7A  N4   N1   N  0  1  Y  N  N   -8.976  -2.678  15.718   5.097   3.513  -1.292  N4   A7A   6  
A7A  C22  C5   C  0  1  Y  N  N  -10.131  -2.270  15.162   4.822   3.597  -0.005  C22  A7A   7  
A7A  C21  C6   C  0  1  Y  N  N  -10.726  -1.067  15.580   4.153   2.576   0.643  C21  A7A   8  
A7A  C8   C7   C  0  1  Y  N  N  -12.120   0.482  17.572   1.576   0.606   0.621  C8   A7A   9  
A7A  N1   N2   N  0  1  Y  N  N  -13.208   0.423  16.799   1.000   1.463   1.413  N1   A7A  10  
A7A  C9   C8   C  0  1  Y  N  N  -14.194  -0.153  17.532  -0.336   1.480   1.174  C9   A7A  11  
A7A  C14  C9   C  0  1  Y  N  N  -13.682  -0.477  18.793  -0.580   0.551   0.147  C14  A7A  12  
A7A  N    N3   N  0  1  Y  N  N  -12.405  -0.111  18.796   0.650   0.018  -0.184  N    A7A  13  
A7A  C7   C10  C  0  1  N  N  N  -11.494  -0.229  19.957   0.910  -0.995  -1.211  C7   A7A  14  
A7A  C6   C11  C  0  1  Y  N  N  -11.195  -1.672  20.347   0.920  -2.362  -0.576  C6   A7A  15  
A7A  C4   C12  C  0  1  Y  N  N  -11.102  -1.971  21.679   1.269  -3.469  -1.326  C4   A7A  16  
A7A  C5   C13  C  0  1  N  N  N  -11.353  -0.904  22.715   1.641  -3.309  -2.777  C5   A7A  17  
A7A  C3   C14  C  0  1  Y  N  N  -10.834  -3.253  22.074   1.278  -4.723  -0.743  C3   A7A  18  
A7A  C2   C15  C  0  1  Y  N  N  -10.630  -4.250  21.139   0.937  -4.870   0.588  C2   A7A  19  
A7A  C25  C16  C  0  1  Y  N  N  -10.949  -2.667  19.392   0.585  -2.507   0.757  C25  A7A  20  
A7A  C1   C17  C  0  1  Y  N  N  -10.666  -3.958  19.804   0.586  -3.762   1.337  C1   A7A  21  
A7A  C    C18  C  0  1  N  N  N  -10.395  -5.077  18.812   0.221  -3.921   2.791  C    A7A  22  
A7A  C13  C19  C  0  1  Y  N  N  -14.501  -1.075  19.755  -1.872   0.350  -0.312  C13  A7A  23  
A7A  C12  C20  C  0  1  Y  N  N  -15.845  -1.369  19.443  -2.920   1.073   0.247  C12  A7A  24  
A7A  C11  C21  C  0  1  Y  N  N  -16.344  -1.034  18.195  -2.671   1.996   1.267  C11  A7A  25  
A7A  C10  C22  C  0  1  Y  N  N  -15.523  -0.446  17.238  -1.402   2.198   1.725  C10  A7A  26  
A7A  C15  C23  C  0  1  Y  N  N  -16.676  -2.081  20.334  -4.306   0.864  -0.240  C15  A7A  27  
A7A  C18  C24  C  0  1  Y  N  N  -16.306  -3.127  21.183  -5.424   1.503   0.210  C18  A7A  28  
A7A  N3   N4   N  0  1  Y  N  N  -17.401  -3.494  21.850  -6.475   1.029  -0.489  N3   A7A  29  
A7A  C17  C25  C  0  1  N  N  N  -17.665  -4.528  22.879  -7.871   1.443  -0.329  C17  A7A  30  
A7A  N2   N5   N  0  1  Y  N  N  -18.506  -2.725  21.496  -6.002   0.072  -1.396  N2   A7A  31  
A7A  C16  C26  C  0  1  Y  N  N  -18.057  -1.852  20.541  -4.706  -0.027  -1.256  C16  A7A  32  
A7A  H1   H1   H  0  1  N  N  N  -11.433   2.603  16.320   3.408   0.947   2.485  H1   A7A  33  
A7A  H2   H2   H  0  1  N  N  N  -10.225   1.401  17.899   3.231  -0.609   0.041  H2   A7A  34  
A7A  H3   H3   H  0  1  N  N  N   -8.477  -0.186  17.934   3.809   0.538  -2.018  H3   A7A  35  
A7A  H4   H4   H  0  1  N  N  N   -7.458  -2.293  17.138   4.997   2.427  -3.059  H4   A7A  36  
A7A  H5   H5   H  0  1  N  N  N  -10.601  -2.867  14.394   5.116   4.477   0.548  H5   A7A  37  
A7A  H6   H6   H  0  1  N  N  N  -11.655  -0.744  15.134   3.930   2.651   1.697  H6   A7A  38  
A7A  H7   H7   H  0  1  N  N  N  -10.545   0.269  19.708   0.128  -0.952  -1.969  H7   A7A  39  
A7A  H8   H8   H  0  1  N  N  N  -11.958   0.276  20.817   1.877  -0.803  -1.674  H8   A7A  40  
A7A  H9   H9   H  0  1  N  N  N  -12.424  -0.878  22.964   2.724  -3.218  -2.867  H9   A7A  41  
A7A  H10  H10  H  0  1  N  N  N  -10.772  -1.129  23.621   1.303  -4.182  -3.337  H10  A7A  42  
A7A  H11  H11  H  0  1  N  N  N  -11.046   0.074  22.316   1.166  -2.414  -3.178  H11  A7A  43  
A7A  H12  H12  H  0  1  N  N  N  -10.781  -3.488  23.127   1.552  -5.588  -1.329  H12  A7A  44  
A7A  H13  H13  H  0  1  N  N  N  -10.442  -5.263  21.464   0.944  -5.849   1.042  H13  A7A  45  
A7A  H14  H14  H  0  1  N  N  N  -10.980  -2.428  18.339   0.311  -1.642   1.343  H14  A7A  46  
A7A  H15  H15  H  0  1  N  N  N   -9.318  -5.121  18.593  -0.854  -4.081   2.880  H15  A7A  47  
A7A  H16  H16  H  0  1  N  N  N  -10.721  -6.035  19.243   0.752  -4.777   3.207  H16  A7A  48  
A7A  H17  H17  H  0  1  N  N  N  -10.951  -4.885  17.882   0.500  -3.019   3.336  H17  A7A  49  
A7A  H18  H18  H  0  1  N  N  N  -14.107  -1.311  20.732  -2.064  -0.363  -1.100  H18  A7A  50  
A7A  H19  H19  H  0  1  N  N  N  -17.380  -1.231  17.963  -3.490   2.554   1.695  H19  A7A  51  
A7A  H20  H20  H  0  1  N  N  N  -15.919  -0.215  16.260  -1.221   2.913   2.514  H20  A7A  52  
A7A  H21  H21  H  0  1  N  N  N  -15.320  -3.557  21.281  -5.461   2.253   0.987  H21  A7A  53  
A7A  H22  H22  H  0  1  N  N  N  -18.723  -4.488  23.177  -8.080   2.281  -0.994  H22  A7A  54  
A7A  H23  H23  H  0  1  N  N  N  -17.438  -5.522  22.466  -8.528   0.610  -0.577  H23  A7A  55  
A7A  H24  H24  H  0  1  N  N  N  -17.030  -4.342  23.757  -8.044   1.747   0.704  H24  A7A  56  
A7A  H25  H25  H  0  1  N  N  N  -18.657  -1.112  20.031  -4.056  -0.680  -1.819  H25  A7A  57  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A7A  C22  C21  DOUB  Y  N   1  
A7A  C22  N4   SING  Y  N   2  
A7A  C21  C20  SING  Y  N   3  
A7A  N4   C23  DOUB  Y  N   4  
A7A  O    C19  SING  N  N   5  
A7A  C20  C19  SING  N  N   6  
A7A  C20  C24  DOUB  Y  N   7  
A7A  C23  C24  SING  Y  N   8  
A7A  N1   C9   SING  Y  N   9  
A7A  N1   C8   DOUB  Y  N  10  
A7A  C19  C8   SING  N  N  11  
A7A  C10  C9   DOUB  Y  N  12  
A7A  C10  C11  SING  Y  N  13  
A7A  C9   C14  SING  Y  N  14  
A7A  C8   N    SING  Y  N  15  
A7A  C11  C12  DOUB  Y  N  16  
A7A  C14  N    SING  Y  N  17  
A7A  C14  C13  DOUB  Y  N  18  
A7A  N    C7   SING  N  N  19  
A7A  C    C1   SING  N  N  20  
A7A  C25  C1   DOUB  Y  N  21  
A7A  C25  C6   SING  Y  N  22  
A7A  C12  C13  SING  Y  N  23  
A7A  C12  C15  SING  N  N  24  
A7A  C1   C2   SING  Y  N  25  
A7A  C7   C6   SING  N  N  26  
A7A  C15  C16  SING  Y  N  27  
A7A  C15  C18  DOUB  Y  N  28  
A7A  C6   C4   DOUB  Y  N  29  
A7A  C16  N2   DOUB  Y  N  30  
A7A  C2   C3   DOUB  Y  N  31  
A7A  C18  N3   SING  Y  N  32  
A7A  N2   N3   SING  Y  N  33  
A7A  C4   C3   SING  Y  N  34  
A7A  C4   C5   SING  N  N  35  
A7A  N3   C17  SING  N  N  36  
A7A  O    H1   SING  N  N  37  
A7A  C19  H2   SING  N  N  38  
A7A  C24  H3   SING  N  N  39  
A7A  C23  H4   SING  N  N  40  
A7A  C22  H5   SING  N  N  41  
A7A  C21  H6   SING  N  N  42  
A7A  C7   H7   SING  N  N  43  
A7A  C7   H8   SING  N  N  44  
A7A  C5   H9   SING  N  N  45  
A7A  C5   H10  SING  N  N  46  
A7A  C5   H11  SING  N  N  47  
A7A  C3   H12  SING  N  N  48  
A7A  C2   H13  SING  N  N  49  
A7A  C25  H14  SING  N  N  50  
A7A  C    H15  SING  N  N  51  
A7A  C    H16  SING  N  N  52  
A7A  C    H17  SING  N  N  53  
A7A  C13  H18  SING  N  N  54  
A7A  C11  H19  SING  N  N  55  
A7A  C10  H20  SING  N  N  56  
A7A  C18  H21  SING  N  N  57  
A7A  C17  H22  SING  N  N  58  
A7A  C17  H23  SING  N  N  59  
A7A  C17  H24  SING  N  N  60  
A7A  C16  H25  SING  N  N  61  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A7A  SMILES            ACDLabs               12.01  "OC(c1n(c2c(n1)ccc(c2)c3cnn(c3)C)Cc4c(ccc(c4)C)C)c5ccncc5"  
A7A  InChI             InChI                 1.03   "InChI=1S/C26H25N5O/c1-17-4-5-18(2)21(12-17)16-31-24-13-20(22-14-28-30(3)15-22)6-7-23(24)29-26(31)25(32)19-8-10-27-11-9-19/h4-15,25,32H,16H2,1-3H3/t25-/m1/s1"  
A7A  InChIKey          InChI                 1.03   RZGFWGNCSYUEPR-RUZDIDTESA-N  
A7A  SMILES_CANONICAL  CACTVS                3.385  "Cn1cc(cn1)c2ccc3nc([C@H](O)c4ccncc4)n(Cc5cc(C)ccc5C)c3c2"  
A7A  SMILES            CACTVS                3.385  "Cn1cc(cn1)c2ccc3nc([CH](O)c4ccncc4)n(Cc5cc(C)ccc5C)c3c2"  
A7A  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "Cc1ccc(c(c1)Cn2c3cc(ccc3nc2[C@@H](c4ccncc4)O)c5cnn(c5)C)C"  
A7A  SMILES            "OpenEye OEToolkits"  2.0.6  "Cc1ccc(c(c1)Cn2c3cc(ccc3nc2C(c4ccncc4)O)c5cnn(c5)C)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A7A  "SYSTEMATIC NAME"  ACDLabs               12.01  "(R)-{1-[(2,5-dimethylphenyl)methyl]-6-(1-methyl-1H-pyrazol-4-yl)-1H-benzimidazol-2-yl}(pyridin-4-yl)methanol"  
A7A  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(~{R})-[1-[(2,5-dimethylphenyl)methyl]-6-(1-methylpyrazol-4-yl)benzimidazol-2-yl]-pyridin-4-yl-methanol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A7A  "Create component"  2017-07-08  RCSB  
A7A  "Initial release"   2019-12-25  RCSB  
##
