data_A3A
# 
_chem_comp.id                                    A3A 
_chem_comp.name                                  "2'DEOXY-ALPHA-ANOMERIC-ADENOSINE-5'-PHOSPHATE" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C10 H14 N5 O6 P" 
_chem_comp.mon_nstd_parent_comp_id               DA 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2004-01-13 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        331.222 
_chem_comp.one_letter_code                       A 
_chem_comp.three_letter_code                     A3A 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1S0T 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A3A C8A    C8A  C 0 1 Y N N 5.903  1.463  1.322  -1.786 -1.140 -2.636 C8A    A3A 1  
A3A N9A    N9A  N 0 1 Y N N 5.175  1.605  0.177  -1.339 -1.685 -1.458 N9A    A3A 2  
A3A C4A    C4A  C 0 1 Y N N 3.859  1.627  0.567  -2.447 -1.967 -0.707 C4A    A3A 3  
A3A C5A    C5A  C 0 1 Y N N 3.875  1.565  1.933  -3.525 -1.572 -1.482 C5A    A3A 4  
A3A N7A    N7A  N 0 1 Y N N 5.187  1.468  2.416  -3.099 -1.059 -2.681 N7A    A3A 5  
A3A N3A    N3A  N 0 1 Y N N 2.766  1.690  -0.240 -2.484 -2.511 0.519  N3A    A3A 6  
A3A C2A    C2A  C 0 1 Y N N 1.634  1.668  0.464  -3.762 -2.639 0.940  C2A    A3A 7  
A3A N1A    N1A  N 0 1 Y N N 1.483  1.626  1.788  -4.906 -2.300 0.298  N1A    A3A 8  
A3A C6A    C6A  C 0 1 Y N N 2.598  1.586  2.535  -4.792 -1.755 -0.938 C6A    A3A 9  
A3A N6A    N6A  N 0 1 N N N 2.427  1.540  3.844  -5.942 -1.382 -1.654 N6A    A3A 10 
A3A P      P    P 0 1 N N N 8.057  3.757  -5.175 4.679  -4.193 -2.336 P      A3A 11 
A3A OP1    O1P  O 0 1 N N N 9.333  4.493  -5.031 4.860  -5.343 -3.283 OP1    A3A 12 
A3A OP2    O2P  O 0 1 N N N 7.855  2.863  -6.335 4.448  -4.601 -0.789 OP2    A3A 13 
A3A "O6'"  O6*  O 0 1 N N N 7.821  2.885  -3.832 3.427  -3.224 -2.669 "O6'"  A3A 14 
A3A "C5'"  C5*  C 0 1 N N N 8.362  3.272  -2.582 3.188  -2.113 -1.820 "C5'"  A3A 15 
A3A "C4'"  C4*  C 0 1 N N R 7.924  2.396  -1.411 1.967  -1.357 -2.330 "C4'"  A3A 16 
A3A "O5'"  O5*  O 0 1 N N N 6.695  2.912  -0.970 0.831  -2.238 -2.256 "O5'"  A3A 17 
A3A "C3'"  C3*  C 0 1 N N S 7.754  0.916  -1.767 1.620  -0.148 -1.475 "C3'"  A3A 18 
A3A "O3'"  O3*  O 0 1 N N N 8.171  0.100  -0.697 0.890  0.784  -2.268 "O3'"  A3A 19 
A3A "C2'"  C2*  C 0 1 N N N 6.253  0.801  -1.985 0.719  -0.720 -0.404 "C2'"  A3A 20 
A3A "C1'"  C1*  C 0 1 N N S 5.689  1.952  -1.155 0.060  -1.915 -1.087 "C1'"  A3A 21 
A3A O1     O1   O 0 1 N N N ?      ?      ?      5.924  -3.163 -2.267 O1     A3A 22 
A3A H8A    H8A  H 0 1 N N N 6.982  1.389  1.263  -1.108 -0.824 -3.417 H8A    A3A 23 
A3A H2A    H2A  H 0 1 N N N 0.727  1.648  -0.122 -3.890 -3.071 1.926  H2A    A3A 24 
A3A HN61   1HN6 H 0 0 N N N 1.477  1.491  4.212  -6.416 -2.064 -2.216 HN61   A3A 25 
A3A HN62   2HN6 H 0 0 N N N 3.236  1.452  4.432  -6.221 -0.420 -1.671 HN62   A3A 26 
A3A H2P    H2P  H 0 1 N N N 7.036  2.390  -6.427 5.055  -5.250 -0.373 H2P    A3A 27 
A3A "H5'"  1H5* H 0 1 N N N 8.127  4.316  -2.371 3.013  -2.474 -0.803 "H5'"  A3A 28 
A3A "H5''" 2H5* H 0 0 N N N 9.421  3.158  -2.644 4.067  -1.464 -1.828 "H5''" A3A 29 
A3A "H4'"  H4*  H 0 1 N N N 8.630  2.480  -0.580 2.118  -1.093 -3.382 "H4'"  A3A 30 
A3A "H3'"  H3*  H 0 1 N N N 8.313  0.662  -2.671 2.494  0.373  -1.074 "H3'"  A3A 31 
A3A H1     H1   H 0 1 N N N 8.065  -0.817 -0.917 1.209  0.697  -3.183 H1     A3A 32 
A3A "H2'"  1H2* H 0 1 N N N 6.020  0.954  -3.038 1.335  -1.087 0.426  "H2'"  A3A 33 
A3A "H2''" 2H2* H 0 0 N N N 5.873  -0.161 -1.652 -0.002 -0.000 -0.004 "H2''" A3A 34 
A3A "H1'"  H1*  H 0 1 N N N 4.910  2.435  -1.700 0.033  -2.787 -0.427 "H1'"  A3A 35 
A3A HO1    HO1  H 0 1 N N N -0.819 -0.472 -0.092 6.831  -3.521 -2.166 HO1    A3A 36 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A3A C8A   N9A    SING Y N 1  
A3A C8A   N7A    DOUB Y N 2  
A3A C8A   H8A    SING N N 3  
A3A N9A   C4A    SING Y N 4  
A3A N9A   "C1'"  SING N N 5  
A3A C4A   C5A    DOUB Y N 6  
A3A C4A   N3A    SING Y N 7  
A3A C5A   N7A    SING Y N 8  
A3A C5A   C6A    SING Y N 9  
A3A N3A   C2A    DOUB Y N 10 
A3A C2A   N1A    SING Y N 11 
A3A C2A   H2A    SING N N 12 
A3A N1A   C6A    DOUB Y N 13 
A3A C6A   N6A    SING N N 14 
A3A N6A   HN61   SING N N 15 
A3A N6A   HN62   SING N N 16 
A3A P     OP1    DOUB N N 17 
A3A P     OP2    SING N N 18 
A3A P     "O6'"  SING N N 19 
A3A P     O1     SING N N 20 
A3A OP2   H2P    SING N N 21 
A3A "O6'" "C5'"  SING N N 22 
A3A "C5'" "C4'"  SING N N 23 
A3A "C5'" "H5'"  SING N N 24 
A3A "C5'" "H5''" SING N N 25 
A3A "C4'" "O5'"  SING N N 26 
A3A "C4'" "C3'"  SING N N 27 
A3A "C4'" "H4'"  SING N N 28 
A3A "O5'" "C1'"  SING N N 29 
A3A "C3'" "O3'"  SING N N 30 
A3A "C3'" "C2'"  SING N N 31 
A3A "C3'" "H3'"  SING N N 32 
A3A "O3'" H1     SING N N 33 
A3A "C2'" "C1'"  SING N N 34 
A3A "C2'" "H2'"  SING N N 35 
A3A "C2'" "H2''" SING N N 36 
A3A "C1'" "H1'"  SING N N 37 
A3A O1    HO1    SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A3A SMILES           ACDLabs              10.04 "O=P(O)(O)OCC3OC(n2cnc1c(ncnc12)N)CC3O"                                                                                                          
A3A SMILES_CANONICAL CACTVS               3.341 "Nc1ncnc2n(cnc12)[C@@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3"                                                                                        
A3A SMILES           CACTVS               3.341 "Nc1ncnc2n(cnc12)[CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3"                                                                                             
A3A SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O)N"                                                                                      
A3A SMILES           "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3CC(C(O3)COP(=O)(O)O)O)N"                                                                                                    
A3A InChI            InChI                1.03  "InChI=1S/C10H14N5O6P/c11-9-8-10(13-3-12-9)15(4-14-8)7-1-5(16)6(21-7)2-20-22(17,18)19/h3-7,16H,1-2H2,(H2,11,12,13)(H2,17,18,19)/t5-,6+,7-/m0/s1" 
A3A InChIKey         InChI                1.03  KHWCHTKSEGGWEX-XVMARJQXSA-N                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A3A "SYSTEMATIC NAME" ACDLabs              10.04 
;2'-deoxy-5'-adenylic acid
;
A3A "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5S)-5-(6-aminopurin-9-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A3A "Create component"  2004-01-13 RCSB 
A3A "Modify descriptor" 2011-06-04 RCSB 
# 
