data_A1ADA
# 
_chem_comp.id                                    A1ADA 
_chem_comp.name                                  "5-{[5-chloro-2-(dimethylamino)pyrimidin-4-yl]amino}-1,3-dihydro-2H-indol-2-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H14 Cl N5 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-01-18 
_chem_comp.pdbx_modified_date                    2024-12-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        303.747 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1ADA 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7GWG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1ADA C10 C1  C  0 1 N N N N N N 22.049 -10.868 19.895 -4.740 -0.573 0.391  C10 A1ADA 1  
A1ADA C11 C2  C  0 1 N N N N N N 23.094 -11.816 19.279 -3.360 -0.954 0.883  C11 A1ADA 2  
A1ADA C12 C3  C  0 1 Y N N N N N 23.812 -10.928 18.298 -2.464 0.141  0.351  C12 A1ADA 3  
A1ADA C13 C4  C  0 1 Y N N N N N 24.857 -11.229 17.418 -1.110 0.368  0.446  C13 A1ADA 4  
A1ADA O   O1  O  0 1 N N N N N N 21.191 -11.123 20.721 -5.769 -1.182 0.591  O   A1ADA 5  
A1ADA N3  N1  N  0 1 N N N N N N 22.207 -9.582  19.313 -4.611 0.571  -0.303 N3  A1ADA 6  
A1ADA C9  C5  C  0 1 Y N N N N N 23.244 -9.617  18.356 -3.286 1.013  -0.351 C9  A1ADA 7  
A1ADA C8  C6  C  0 1 Y N N N N N 23.705 -8.575  17.532 -2.723 2.133  -0.959 C8  A1ADA 8  
A1ADA C7  C7  C  0 1 Y N N N N N 24.748 -8.870  16.634 -1.367 2.368  -0.862 C7  A1ADA 9  
A1ADA C6  C8  C  0 1 Y N N N N N 25.331 -10.159 16.560 -0.552 1.485  -0.167 C6  A1ADA 10 
A1ADA N2  N2  N  0 1 N N N N N N 26.188 -10.606 15.507 0.824  1.726  -0.070 N2  A1ADA 11 
A1ADA C5  C9  C  0 1 Y N N N N N 26.277 -10.138 14.235 1.713  0.662  -0.026 C5  A1ADA 12 
A1ADA C4  C10 C  0 1 Y N N N N N 27.293 -10.599 13.344 3.075  0.886  0.187  C4  A1ADA 13 
A1ADA CL  CL1 CL 0 0 N N N N N N 28.578 -11.477 13.898 3.689  2.495  0.401  CL  A1ADA 14 
A1ADA C3  C11 C  0 1 Y N N N N N 27.214 -10.251 12.006 3.924  -0.205 0.223  C3  A1ADA 15 
A1ADA N1  N3  N  0 1 Y N N N N N 26.225 -9.469  11.534 3.424  -1.421 0.057  N1  A1ADA 16 
A1ADA N4  N4  N  0 1 Y N N N N N 25.282 -9.350  13.778 1.280  -0.585 -0.180 N4  A1ADA 17 
A1ADA C2  C12 C  0 1 Y N N N N N 25.282 -9.017  12.449 2.127  -1.602 -0.143 C2  A1ADA 18 
A1ADA N   N5  N  0 1 N N N N N N 24.291 -8.079  12.038 1.644  -2.889 -0.313 N   A1ADA 19 
A1ADA C1  C13 C  0 1 N N N N N N 24.201 -7.604  10.625 0.213  -3.111 -0.535 C1  A1ADA 20 
A1ADA C   C14 C  0 1 N N N N N N 23.273 -7.517  12.993 2.564  -4.028 -0.270 C   A1ADA 21 
A1ADA H1  H1  H  0 1 N N N N N N 22.610 -12.661 18.768 -3.334 -0.973 1.972  H1  A1ADA 22 
A1ADA H2  H2  H  0 1 N N N N N N 23.784 -12.198 20.046 -3.065 -1.922 0.478  H2  A1ADA 23 
A1ADA H3  H3  H  0 1 N N N N N N 25.293 -12.216 17.379 -0.483 -0.318 0.995  H3  A1ADA 24 
A1ADA H4  H4  H  0 1 N N N N N N 21.666 -8.774  19.546 -5.352 1.034  -0.724 H4  A1ADA 25 
A1ADA H5  H5  H  0 1 N N N N N N 23.275 -7.586  17.586 -3.350 2.820  -1.508 H5  A1ADA 26 
A1ADA H6  H6  H  0 1 N N N N N N 25.115 -8.091  15.982 -0.937 3.238  -1.336 H6  A1ADA 27 
A1ADA H7  H7  H  0 1 N N N N N N 26.802 -11.361 15.737 1.155  2.637  -0.034 H7  A1ADA 28 
A1ADA H8  H8  H  0 1 N N N N N N 27.966 -10.617 11.323 4.983  -0.067 0.385  H8  A1ADA 29 
A1ADA H9  H9  H  0 1 N N N N N N 23.371 -6.889  10.530 0.004  -3.087 -1.605 H9  A1ADA 30 
A1ADA H10 H10 H  0 1 N N N N N N 25.143 -7.111  10.343 -0.071 -4.083 -0.131 H10 A1ADA 31 
A1ADA H11 H11 H  0 1 N N N N N N 24.023 -8.462  9.960  -0.358 -2.329 -0.035 H11 A1ADA 32 
A1ADA H12 H12 H  0 1 N N N N N N 23.439 -7.938  13.996 2.647  -4.390 0.755  H12 A1ADA 33 
A1ADA H13 H13 H  0 1 N N N N N N 23.373 -6.422  13.033 2.184  -4.827 -0.907 H13 A1ADA 34 
A1ADA H14 H14 H  0 1 N N N N N N 22.262 -7.780  12.648 3.546  -3.716 -0.626 H14 A1ADA 35 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1ADA C1  N   SING N N 1  
A1ADA N1  C3  DOUB Y N 2  
A1ADA N1  C2  SING Y N 3  
A1ADA C3  C4  SING Y N 4  
A1ADA N   C2  SING N N 5  
A1ADA N   C   SING N N 6  
A1ADA C2  N4  DOUB Y N 7  
A1ADA C4  CL  SING N N 8  
A1ADA C4  C5  DOUB Y N 9  
A1ADA N4  C5  SING Y N 10 
A1ADA C5  N2  SING N N 11 
A1ADA N2  C6  SING N N 12 
A1ADA C6  C7  DOUB Y N 13 
A1ADA C6  C13 SING Y N 14 
A1ADA C7  C8  SING Y N 15 
A1ADA C13 C12 DOUB Y N 16 
A1ADA C8  C9  DOUB Y N 17 
A1ADA C12 C9  SING Y N 18 
A1ADA C12 C11 SING N N 19 
A1ADA C9  N3  SING N N 20 
A1ADA C11 C10 SING N N 21 
A1ADA N3  C10 SING N N 22 
A1ADA C10 O   DOUB N N 23 
A1ADA C11 H1  SING N N 24 
A1ADA C11 H2  SING N N 25 
A1ADA C13 H3  SING N N 26 
A1ADA N3  H4  SING N N 27 
A1ADA C8  H5  SING N N 28 
A1ADA C7  H6  SING N N 29 
A1ADA N2  H7  SING N N 30 
A1ADA C3  H8  SING N N 31 
A1ADA C1  H9  SING N N 32 
A1ADA C1  H10 SING N N 33 
A1ADA C1  H11 SING N N 34 
A1ADA C   H12 SING N N 35 
A1ADA C   H13 SING N N 36 
A1ADA C   H14 SING N N 37 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1ADA SMILES           ACDLabs              12.01 "CN(C)c1ncc(Cl)c(n1)Nc1cc2CC(=O)Nc2cc1"                                                                                       
A1ADA InChI            InChI                1.06  "InChI=1S/C14H14ClN5O/c1-20(2)14-16-7-10(15)13(19-14)17-9-3-4-11-8(5-9)6-12(21)18-11/h3-5,7H,6H2,1-2H3,(H,18,21)(H,16,17,19)" 
A1ADA InChIKey         InChI                1.06  MDNVCBTZAJHKQF-UHFFFAOYSA-N                                                                                                   
A1ADA SMILES_CANONICAL CACTVS               3.385 "CN(C)c1ncc(Cl)c(Nc2ccc3NC(=O)Cc3c2)n1"                                                                                       
A1ADA SMILES           CACTVS               3.385 "CN(C)c1ncc(Cl)c(Nc2ccc3NC(=O)Cc3c2)n1"                                                                                       
A1ADA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)c1ncc(c(n1)Nc2ccc3c(c2)CC(=O)N3)Cl"                                                                                     
A1ADA SMILES           "OpenEye OEToolkits" 2.0.7 "CN(C)c1ncc(c(n1)Nc2ccc3c(c2)CC(=O)N3)Cl"                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1ADA "SYSTEMATIC NAME" ACDLabs              12.01 "5-{[5-chloro-2-(dimethylamino)pyrimidin-4-yl]amino}-1,3-dihydro-2H-indol-2-one" 
A1ADA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[[5-chloranyl-2-(dimethylamino)pyrimidin-4-yl]amino]-1,3-dihydroindol-2-one"  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1ADA "Create component" 2024-01-18 RCSB 
A1ADA "Initial release"  2024-12-11 RCSB 
# 
