data_9NA
# 
_chem_comp.id                                    9NA 
_chem_comp.name                                  "(2S)-2-cyclohexyl-2-[2-(2,6-dimethoxypyridin-3-yl)-5,6-difluoro-1H-benzimidazol-1-yl]-N-(trans-4-hydroxycyclohexyl)acetamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H34 F2 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-05-19 
_chem_comp.pdbx_modified_date                    2017-06-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        528.591 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9NA 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5Q1C 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9NA N3  N1  N 0 1 Y N N 13.301 26.033 2.450  -2.637 1.265  0.906  N3  9NA 1  
9NA C4  C1  C 0 1 Y N N 11.816 24.884 3.753  -2.766 -0.877 0.324  C4  9NA 2  
9NA C5  C2  C 0 1 Y N N 15.417 24.905 3.032  -0.358 1.856  0.141  C5  9NA 3  
9NA C6  C3  C 0 1 Y N N 11.964 25.903 2.826  -3.460 0.188  0.926  C6  9NA 4  
9NA C7  C4  C 0 1 N N N 12.710 21.978 4.596  0.814  -0.990 0.105  C7  9NA 5  
9NA C8  C5  C 0 1 Y N N 16.007 23.880 2.254  -0.387 3.155  0.666  C8  9NA 6  
9NA C10 C6  C 0 1 N N S 13.583 23.247 4.842  -0.452 -1.114 -0.702 C10 9NA 7  
9NA C15 C7  C 0 1 Y N N 9.629  26.294 2.949  -5.345 -1.259 1.277  C15 9NA 8  
9NA C17 C8  C 0 1 Y N N 18.128 24.499 2.830  1.713  3.605  -0.187 C17 9NA 9  
9NA C20 C9  C 0 1 Y N N 17.668 25.550 3.635  1.811  2.333  -0.741 C20 9NA 10 
9NA C22 C10 C 0 1 N N N 11.728 20.516 2.833  3.134  -1.591 0.544  C22 9NA 11 
9NA C26 C11 C 0 1 N N N 9.956  18.924 1.061  5.547  -2.877 1.596  C26 9NA 12 
9NA C28 C12 C 0 1 N N N 12.252 19.997 1.500  4.372  -1.805 -0.330 C28 9NA 13 
9NA C1  C13 C 0 1 Y N N 13.950 25.109 3.133  -1.499 0.941  0.340  C1  9NA 14 
9NA N2  N2  N 0 1 Y N N 13.119 24.376 3.948  -1.529 -0.376 -0.038 N2  9NA 15 
9NA C12 C14 C 0 1 Y N N 10.849 26.631 2.411  -4.759 -0.018 1.402  C12 9NA 16 
9NA C14 C15 C 0 1 Y N N 9.499  25.275 3.872  -4.654 -2.308 0.680  C14 9NA 17 
9NA C11 C16 C 0 1 Y N N 10.582 24.543 4.300  -3.372 -2.119 0.205  C11 9NA 18 
9NA F23 F1  F 0 1 N N N 8.272  24.993 4.366  -5.242 -3.519 0.565  F23 9NA 19 
9NA F24 F2  F 0 1 N N N 8.525  26.977 2.565  -6.600 -1.457 1.738  F24 9NA 20 
9NA O18 O1  O 0 1 N N N 12.252 21.315 5.523  0.827  -0.317 1.114  O18 9NA 21 
9NA N13 N3  N 0 1 N N N 12.510 21.670 3.300  1.933  -1.626 -0.294 N13 9NA 22 
9NA C27 C17 C 0 1 N N N 10.251 20.834 2.728  3.055  -2.700 1.595  C27 9NA 23 
9NA C29 C18 C 0 1 N N N 9.449  19.581 2.367  4.309  -2.664 2.470  C29 9NA 24 
9NA C30 C19 C 0 1 N N N 11.506 18.733 1.042  5.627  -1.769 0.545  C30 9NA 25 
9NA O31 O2  O 0 1 N N N 9.317  17.647 0.908  6.719  -2.844 2.414  O31 9NA 26 
9NA C19 C20 C 0 1 N N N 13.961 23.755 6.252  -0.225 -0.537 -2.101 C19 9NA 27 
9NA C32 C21 C 0 1 N N N 13.108 24.926 6.738  1.020  -1.176 -2.720 C32 9NA 28 
9NA C36 C22 C 0 1 N N N 13.704 25.551 8.002  1.247  -0.598 -4.119 C36 9NA 29 
9NA C38 C23 C 0 1 N N N 13.855 24.518 9.126  0.031  -0.896 -4.997 C38 9NA 30 
9NA C37 C24 C 0 1 N N N 14.601 23.213 8.638  -1.214 -0.257 -4.378 C37 9NA 31 
9NA C33 C25 C 0 1 N N N 14.004 22.668 7.311  -1.441 -0.834 -2.979 C33 9NA 32 
9NA N9  N4  N 0 1 Y N N 17.324 23.679 2.152  0.635  3.974  0.487  N9  9NA 33 
9NA C16 C26 C 0 1 Y N N 16.295 25.744 3.729  0.768  1.441  -0.580 C16 9NA 34 
9NA O25 O3  O 0 1 N N N 19.485 24.333 2.754  2.735  4.481  -0.343 O25 9NA 35 
9NA C35 C27 C 0 1 N N N 19.983 23.056 2.360  2.578  5.773  0.248  C35 9NA 36 
9NA O21 O4  O 0 1 N N N 15.168 23.075 1.594  -1.472 3.575  1.362  O21 9NA 37 
9NA C34 C28 C 0 1 N N N 15.356 22.939 0.189  -1.439 4.910  1.871  C34 9NA 38 
9NA H1  H1  H 0 1 N N N 14.555 22.965 4.411  -0.729 -2.165 -0.784 H1  9NA 39 
9NA H2  H2  H 0 1 N N N 18.359 26.189 4.165  2.696  2.045  -1.288 H2  9NA 40 
9NA H3  H3  H 0 1 N N N 11.841 19.707 3.569  3.203  -0.624 1.040  H3  9NA 41 
9NA H4  H4  H 0 1 N N N 9.683  19.578 0.219  5.479  -3.845 1.099  H4  9NA 42 
9NA H5  H5  H 0 1 N N N 13.321 19.760 1.606  4.304  -2.773 -0.827 H5  9NA 43 
9NA H6  H6  H 0 1 N N N 12.124 20.781 0.739  4.429  -1.015 -1.079 H6  9NA 44 
9NA H7  H7  H 0 1 N N N 10.941 27.432 1.692  -5.300 0.793  1.867  H7  9NA 45 
9NA H8  H8  H 0 1 N N N 10.481 23.746 5.022  -2.840 -2.938 -0.258 H8  9NA 46 
9NA H9  H9  H 0 1 N N N 12.921 22.266 2.610  1.943  -2.107 -1.137 H9  9NA 47 
9NA H10 H10 H 0 1 N N N 10.101 21.595 1.948  2.173  -2.548 2.217  H10 9NA 48 
9NA H11 H11 H 0 1 N N N 9.896  21.223 3.694  2.986  -3.668 1.098  H11 9NA 49 
9NA H12 H12 H 0 1 N N N 8.393  19.861 2.237  4.253  -3.454 3.219  H12 9NA 50 
9NA H13 H13 H 0 1 N N N 9.538  18.854 3.188  4.378  -1.696 2.967  H13 9NA 51 
9NA H14 H14 H 0 1 N N N 11.769 17.903 1.714  5.695  -0.801 1.042  H14 9NA 52 
9NA H15 H15 H 0 1 N N N 11.820 18.488 0.017  6.508  -1.921 -0.078 H15 9NA 53 
9NA H16 H16 H 0 1 N N N 8.374  17.761 0.919  7.543  -2.972 1.925  H16 9NA 54 
9NA H17 H17 H 0 1 N N N 14.988 24.141 6.167  -0.083 0.542  -2.030 H17 9NA 55 
9NA H18 H18 H 0 1 N N N 13.061 25.689 5.947  1.887  -0.964 -2.094 H18 9NA 56 
9NA H19 H19 H 0 1 N N N 12.093 24.564 6.960  0.878  -2.254 -2.791 H19 9NA 57 
9NA H20 H20 H 0 1 N N N 14.695 25.965 7.762  1.390  0.480  -4.048 H20 9NA 58 
9NA H21 H21 H 0 1 N N N 13.042 26.359 8.347  2.134  -1.053 -4.560 H21 9NA 59 
9NA H22 H22 H 0 1 N N N 14.431 24.969 9.948  0.193  -0.484 -5.994 H22 9NA 60 
9NA H23 H23 H 0 1 N N N 12.855 24.240 9.489  -0.112 -1.974 -5.068 H23 9NA 61 
9NA H24 H24 H 0 1 N N N 14.509 22.439 9.414  -1.072 0.822  -4.307 H24 9NA 62 
9NA H25 H25 H 0 1 N N N 15.664 23.449 8.480  -2.081 -0.468 -5.004 H25 9NA 63 
9NA H26 H26 H 0 1 N N N 12.982 22.306 7.497  -1.584 -1.913 -3.050 H26 9NA 64 
9NA H27 H27 H 0 1 N N N 14.628 21.837 6.950  -2.328 -0.379 -2.538 H27 9NA 65 
9NA H28 H28 H 0 1 N N N 15.904 26.544 4.341  0.821  0.448  -1.001 H28 9NA 66 
9NA H29 H29 H 0 1 N N N 21.083 23.079 2.346  2.446  5.666  1.325  H29 9NA 67 
9NA H30 H30 H 0 1 N N N 19.642 22.293 3.075  3.466  6.374  0.049  H30 9NA 68 
9NA H31 H31 H 0 1 N N N 19.609 22.811 1.355  1.704  6.264  -0.178 H31 9NA 69 
9NA H32 H32 H 0 1 N N N 14.600 22.252 -0.218 -0.594 5.019  2.551  H32 9NA 70 
9NA H33 H33 H 0 1 N N N 15.253 23.923 -0.292 -1.332 5.612  1.043  H33 9NA 71 
9NA H34 H34 H 0 1 N N N 16.361 22.537 -0.009 -2.365 5.118  2.406  H34 9NA 72 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9NA C34 O21 SING N N 1  
9NA O31 C26 SING N N 2  
9NA C30 C26 SING N N 3  
9NA C30 C28 SING N N 4  
9NA C26 C29 SING N N 5  
9NA C28 C22 SING N N 6  
9NA O21 C8  SING N N 7  
9NA N9  C8  DOUB Y N 8  
9NA N9  C17 SING Y N 9  
9NA C8  C5  SING Y N 10 
9NA C35 O25 SING N N 11 
9NA C29 C27 SING N N 12 
9NA C12 C6  DOUB Y N 13 
9NA C12 C15 SING Y N 14 
9NA N3  C6  SING Y N 15 
9NA N3  C1  DOUB Y N 16 
9NA F24 C15 SING N N 17 
9NA C27 C22 SING N N 18 
9NA O25 C17 SING N N 19 
9NA C6  C4  SING Y N 20 
9NA C17 C20 DOUB Y N 21 
9NA C22 N13 SING N N 22 
9NA C15 C14 DOUB Y N 23 
9NA C5  C1  SING N N 24 
9NA C5  C16 DOUB Y N 25 
9NA C1  N2  SING Y N 26 
9NA N13 C7  SING N N 27 
9NA C20 C16 SING Y N 28 
9NA C4  N2  SING Y N 29 
9NA C4  C11 DOUB Y N 30 
9NA C14 C11 SING Y N 31 
9NA C14 F23 SING N N 32 
9NA N2  C10 SING N N 33 
9NA C7  C10 SING N N 34 
9NA C7  O18 DOUB N N 35 
9NA C10 C19 SING N N 36 
9NA C19 C32 SING N N 37 
9NA C19 C33 SING N N 38 
9NA C32 C36 SING N N 39 
9NA C33 C37 SING N N 40 
9NA C36 C38 SING N N 41 
9NA C37 C38 SING N N 42 
9NA C10 H1  SING N N 43 
9NA C20 H2  SING N N 44 
9NA C22 H3  SING N N 45 
9NA C26 H4  SING N N 46 
9NA C28 H5  SING N N 47 
9NA C28 H6  SING N N 48 
9NA C12 H7  SING N N 49 
9NA C11 H8  SING N N 50 
9NA N13 H9  SING N N 51 
9NA C27 H10 SING N N 52 
9NA C27 H11 SING N N 53 
9NA C29 H12 SING N N 54 
9NA C29 H13 SING N N 55 
9NA C30 H14 SING N N 56 
9NA C30 H15 SING N N 57 
9NA O31 H16 SING N N 58 
9NA C19 H17 SING N N 59 
9NA C32 H18 SING N N 60 
9NA C32 H19 SING N N 61 
9NA C36 H20 SING N N 62 
9NA C36 H21 SING N N 63 
9NA C38 H22 SING N N 64 
9NA C38 H23 SING N N 65 
9NA C37 H24 SING N N 66 
9NA C37 H25 SING N N 67 
9NA C33 H26 SING N N 68 
9NA C33 H27 SING N N 69 
9NA C16 H28 SING N N 70 
9NA C35 H29 SING N N 71 
9NA C35 H30 SING N N 72 
9NA C35 H31 SING N N 73 
9NA C34 H32 SING N N 74 
9NA C34 H33 SING N N 75 
9NA C34 H34 SING N N 76 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9NA SMILES           ACDLabs              12.01 "n3c5c(n(C(C(=O)NC1CCC(CC1)O)C2CCCCC2)c3c4ccc(nc4OC)OC)cc(c(c5)F)F"                                                                                                                                      
9NA InChI            InChI                1.03  "InChI=1S/C28H34F2N4O4/c1-37-24-13-12-19(28(33-24)38-2)26-32-22-14-20(29)21(30)15-23(22)34(26)25(16-6-4-3-5-7-16)27(36)31-17-8-10-18(35)11-9-17/h12-18,25,35H,3-11H2,1-2H3,(H,31,36)/t17-,18-,25-/m0/s1" 
9NA InChIKey         InChI                1.03  JBIUFHDYJMTSIW-RPPIVITFSA-N                                                                                                                                                                              
9NA SMILES_CANONICAL CACTVS               3.385 "COc1ccc(c(OC)n1)c2nc3cc(F)c(F)cc3n2[C@@H](C4CCCCC4)C(=O)N[C@H]5CC[C@H](O)CC5"                                                                                                                           
9NA SMILES           CACTVS               3.385 "COc1ccc(c(OC)n1)c2nc3cc(F)c(F)cc3n2[CH](C4CCCCC4)C(=O)N[CH]5CC[CH](O)CC5"                                                                                                                               
9NA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "COc1ccc(c(n1)OC)c2nc3cc(c(cc3n2[C@@H](C4CCCCC4)C(=O)NC5CCC(CC5)O)F)F"                                                                                                                                   
9NA SMILES           "OpenEye OEToolkits" 2.0.6 "COc1ccc(c(n1)OC)c2nc3cc(c(cc3n2C(C4CCCCC4)C(=O)NC5CCC(CC5)O)F)F"                                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9NA "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-2-cyclohexyl-2-[2-(2,6-dimethoxypyridin-3-yl)-5,6-difluoro-1H-benzimidazol-1-yl]-N-(trans-4-hydroxycyclohexyl)acetamide"     
9NA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-2-cyclohexyl-2-[2-(2,6-dimethoxypyridin-3-yl)-5,6-bis(fluoranyl)benzimidazol-1-yl]-~{N}-(4-oxidanylcyclohexyl)ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9NA "Create component" 2017-05-19 RCSB 
9NA "Initial release"  2017-07-05 RCSB 
# 
