data_8NA
#

_chem_comp.id                                   8NA
_chem_comp.name                                 "alpha-Diphosphopyridine nucleotide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H27 N7 O14 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        alpha-NAD
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2013-08-29
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       663.425
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    8NA
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3WGG
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8NA  PA   PA   P   0  1  N  N  N   4.647  27.050  13.975  -1.212   3.223  -0.319  PA   8NA   1  
8NA  O1A  O1A  O   0  1  N  N  N   3.491  27.539  14.803  -1.804   3.775   1.072  O1A  8NA   2  
8NA  O2A  O2A  O   0  1  N  N  N   5.297  28.275  13.091  -1.108   4.337  -1.288  O2A  8NA   3  
8NA  O5B  O5B  O   0  1  N  N  N   4.184  25.891  12.918  -2.193   2.090  -0.908  O5B  8NA   4  
8NA  C5B  C5B  C   0  1  N  N  N   3.471  24.815  13.543  -3.530   2.362  -1.332  C5B  8NA   5  
8NA  C4B  C4B  C   0  1  N  N  R   2.586  24.274  12.405  -4.179   1.071  -1.835  C4B  8NA   6  
8NA  O4B  O4B  O   0  1  N  N  N   2.079  22.962  12.623  -4.343   0.150  -0.743  O4B  8NA   7  
8NA  C3B  C3B  C   0  1  N  N  S   1.390  25.186  12.151  -5.583   1.373  -2.394  C3B  8NA   8  
8NA  O3B  O3B  O   0  1  N  N  N   1.415  25.547  10.753  -5.662   1.004  -3.773  O3B  8NA   9  
8NA  C2B  C2B  C   0  1  N  N  R   0.167  24.266  12.541  -6.528   0.491  -1.543  C2B  8NA  10  
8NA  O2B  O2B  O   0  1  N  N  N  -1.015  24.611  11.797  -7.543  -0.101  -2.356  O2B  8NA  11  
8NA  C1B  C1B  C   0  1  N  N  R   0.711  22.917  12.141  -5.560  -0.586  -0.992  C1B  8NA  12  
8NA  N9A  N9A  N   0  1  Y  N  N   0.109  21.790  12.786  -6.079  -1.161   0.251  N9A  8NA  13  
8NA  C8A  C8A  C   0  1  Y  N  N  -0.310  21.653  14.101  -5.761  -0.766   1.517  C8A  8NA  14  
8NA  N7A  N7A  N   0  1  Y  N  N  -0.756  20.429  14.308  -6.405  -1.491   2.384  N7A  8NA  15  
8NA  C5A  C5A  C   0  1  Y  N  N  -0.644  19.724  13.137  -7.175  -2.396   1.732  C5A  8NA  16  
8NA  C6A  C6A  C   0  1  Y  N  N  -0.915  18.402  12.709  -8.060  -3.411   2.133  C6A  8NA  17  
8NA  N6A  N6A  N   0  1  N  N  N  -1.419  17.457  13.571  -8.297  -3.655   3.474  N6A  8NA  18  
8NA  N1A  N1A  N   0  1  Y  N  N  -0.667  18.080  11.458  -8.666  -4.130   1.194  N1A  8NA  19  
8NA  C2A  C2A  C   0  1  Y  N  N  -0.176  18.950  10.565  -8.446  -3.903  -0.089  C2A  8NA  20  
8NA  N3A  N3A  N   0  1  Y  N  N   0.098  20.179  10.900  -7.626  -2.964  -0.510  N3A  8NA  21  
8NA  C4A  C4A  C   0  1  Y  N  N  -0.109  20.609  12.152  -6.980  -2.190   0.356  C4A  8NA  22  
8NA  O3   O3   O   0  1  N  N  N   5.722  26.405  15.060   0.248   2.591  -0.069  O3   8NA  23  
8NA  PN   PN   P   0  1  N  N  N   7.214  26.178  14.435   1.706   3.217   0.199  PN   8NA  24  
8NA  O1N  O1N  O  -1  1  N  N  N   8.071  27.487  14.550   2.274   3.784  -1.122  O1N  8NA  25  
8NA  O2N  O2N  O   0  1  N  N  N   7.177  25.786  12.989   1.596   4.353   1.241  O2N  8NA  26  
8NA  O5D  O5D  O   0  1  N  N  N   7.948  25.051  15.359   2.689   2.070   0.756  O5D  8NA  27  
8NA  C5D  C5D  C   0  1  N  N  N   7.223  23.814  15.394   4.026   2.333   1.188  C5D  8NA  28  
8NA  C4D  C4D  C   0  1  N  N  R   7.870  22.925  16.488   4.676   1.029   1.655  C4D  8NA  29  
8NA  O4D  O4D  O   0  1  N  N  N   9.267  23.366  16.780   4.840   0.142   0.542  O4D  8NA  30  
8NA  C3D  C3D  C   0  1  N  N  S   7.132  22.994  17.841   6.079   1.321   2.230  C3D  8NA  31  
8NA  O3D  O3D  O   0  1  N  N  N   7.261  21.709  18.508   6.050   1.335   3.659  O3D  8NA  32  
8NA  C2D  C2D  C   0  1  N  N  R   7.864  24.098  18.602   6.907   0.115   1.707  C2D  8NA  33  
8NA  O2D  O2D  O   0  1  N  N  N   7.725  23.915  19.996   6.758  -1.021   2.560  O2D  8NA  34  
8NA  C1D  C1D  C   0  1  N  N  S   9.345  24.010  18.087   6.235  -0.127   0.331  C1D  8NA  35  
8NA  N1N  N1N  N   1  1  Y  N  N  10.265  23.196  18.956   6.426  -1.518  -0.090  N1N  8NA  36  
8NA  C2N  C2N  C   0  1  Y  N  N  10.759  23.764  20.116   7.399  -1.804  -0.930  C2N  8NA  37  
8NA  C3N  C3N  C   0  1  Y  N  N  11.604  23.096  20.953   7.609  -3.117  -1.352  C3N  8NA  38  
8NA  C7N  C7N  C   0  1  N  N  N  12.078  23.767  22.102   8.701  -3.438  -2.295  C7N  8NA  39  
8NA  O7N  O7N  O   0  1  N  N  N  11.500  24.792  22.515   9.426  -2.554  -2.710  O7N  8NA  40  
8NA  N7N  N7N  N   0  1  N  N  N  13.183  23.290  22.743   8.894  -4.710  -2.696  N7N  8NA  41  
8NA  C4N  C4N  C   0  1  Y  N  N  12.061  21.662  20.656   6.768  -4.126  -0.867  C4N  8NA  42  
8NA  C5N  C5N  C   0  1  Y  N  N  11.474  21.146  19.351   5.762  -3.773   0.014  C5N  8NA  43  
8NA  C6N  C6N  C   0  1  Y  N  N  10.648  21.871  18.587   5.622  -2.448   0.388  C6N  8NA  44  
8NA  H1   H1   H   0  1  N  N  N   3.363  28.468  14.651  -1.900   3.097   1.756  H1   8NA  45  
8NA  H2   H2   H   0  1  N  N  N   2.858  25.181  14.380  -4.105   2.755  -0.493  H2   8NA  46  
8NA  H3   H3   H   0  1  N  N  N   4.163  24.041  13.907  -3.513   3.097  -2.137  H3   8NA  47  
8NA  H4   H4   H   0  1  N  N  N   3.197  24.269  11.490  -3.558   0.621  -2.609  H4   8NA  48  
8NA  H5   H5   H   0  1  N  N  N   1.424  26.068  12.807  -5.826   2.428  -2.266  H5   8NA  49  
8NA  H6   H6   H   0  1  N  N  N   0.680  26.117  10.560  -6.524   1.173  -4.176  H6   8NA  50  
8NA  H7   H7   H   0  1  N  N  N  -0.004  24.312  13.627  -6.971   1.068  -0.730  H7   8NA  51  
8NA  H8   H8   H   0  1  N  N  N  -1.327  25.464  12.076  -8.120   0.539  -2.794  H8   8NA  52  
8NA  H9   H9   H   0  1  N  N  N   0.685  22.809  11.047  -5.391  -1.366  -1.735  H9   8NA  53  
8NA  H10  H10  H   0  1  N  N  N  -0.276  22.434  14.846  -5.075   0.032   1.763  H10  8NA  54  
8NA  H11  H11  H   0  1  N  N  N  -1.535  16.590  13.086  -7.850  -3.123   4.150  H11  8NA  55  
8NA  H12  H12  H   0  1  N  N  N  -0.785  17.330  14.334  -8.911  -4.359   3.738  H12  8NA  56  
8NA  H13  H13  H   0  1  N  N  N  -0.004  18.627   9.549  -8.955  -4.515  -0.820  H13  8NA  57  
8NA  H15  H15  H   0  1  N  N  N   6.168  24.004  15.640   4.600   2.749   0.360  H15  8NA  58  
8NA  H16  H16  H   0  1  N  N  N   7.287  23.313  14.417   4.008   3.046   2.012  H16  8NA  59  
8NA  H17  H17  H   0  1  N  N  N   7.878  21.882  16.139   4.054   0.557   2.415  H17  8NA  60  
8NA  H18  H18  H   0  1  N  N  N   6.077  23.266  17.687   6.470   2.261   1.842  H18  8NA  61  
8NA  H19  H19  H   0  1  N  N  N   6.810  21.739  19.344   6.907   1.514   4.068  H19  8NA  62  
8NA  H20  H20  H   0  1  N  N  N   7.451  25.072  18.300   7.957   0.381   1.590  H20  8NA  63  
8NA  H21  H21  H   0  1  N  N  N   8.185  24.608  20.454   7.067  -0.877   3.465  H21  8NA  64  
8NA  H22  H22  H   0  1  N  N  N   9.743  25.030  17.984   6.644   0.554  -0.415  H22  8NA  65  
8NA  H23  H23  H   0  1  N  N  N  10.465  24.772  20.368   8.040  -1.015  -1.296  H23  8NA  66  
8NA  H24  H24  H   0  1  N  N  N  13.536  23.763  23.551   8.316  -5.415  -2.365  H24  8NA  67  
8NA  H25  H25  H   0  1  N  N  N  13.641  22.467  22.405   9.611  -4.920  -3.315  H25  8NA  68  
8NA  H26  H26  H   0  1  N  N  N  12.718  21.090  21.294   6.902  -5.153  -1.173  H26  8NA  69  
8NA  H27  H27  H   0  1  N  N  N  11.736  20.150  19.026   5.094  -4.524   0.409  H27  8NA  70  
8NA  H28  H28  H   0  1  N  N  N  10.263  21.445  17.672   4.840  -2.171   1.079  H28  8NA  71  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8NA  C2A  N3A  DOUB  Y  N   1  
8NA  C2A  N1A  SING  Y  N   2  
8NA  O3B  C3B  SING  N  N   3  
8NA  N3A  C4A  SING  Y  N   4  
8NA  N1A  C6A  DOUB  Y  N   5  
8NA  O2B  C2B  SING  N  N   6  
8NA  C1B  C2B  SING  N  N   7  
8NA  C1B  O4B  SING  N  N   8  
8NA  C1B  N9A  SING  N  N   9  
8NA  C3B  C4B  SING  N  N  10  
8NA  C3B  C2B  SING  N  N  11  
8NA  C4A  N9A  SING  Y  N  12  
8NA  C4A  C5A  DOUB  Y  N  13  
8NA  C4B  O4B  SING  N  N  14  
8NA  C4B  C5B  SING  N  N  15  
8NA  C6A  C5A  SING  Y  N  16  
8NA  C6A  N6A  SING  N  N  17  
8NA  N9A  C8A  SING  Y  N  18  
8NA  O5B  C5B  SING  N  N  19  
8NA  O5B  PA   SING  N  N  20  
8NA  O2N  PN   DOUB  N  N  21  
8NA  O2A  PA   DOUB  N  N  22  
8NA  C5A  N7A  SING  Y  N  23  
8NA  PA   O1A  SING  N  N  24  
8NA  PA   O3   SING  N  N  25  
8NA  C8A  N7A  DOUB  Y  N  26  
8NA  PN   O1N  SING  N  N  27  
8NA  PN   O3   SING  N  N  28  
8NA  PN   O5D  SING  N  N  29  
8NA  O5D  C5D  SING  N  N  30  
8NA  C5D  C4D  SING  N  N  31  
8NA  C4D  O4D  SING  N  N  32  
8NA  C4D  C3D  SING  N  N  33  
8NA  O4D  C1D  SING  N  N  34  
8NA  C3D  O3D  SING  N  N  35  
8NA  C3D  C2D  SING  N  N  36  
8NA  C1D  C2D  SING  N  N  37  
8NA  C1D  N1N  SING  N  N  38  
8NA  C6N  N1N  DOUB  Y  N  39  
8NA  C6N  C5N  SING  Y  N  40  
8NA  C2D  O2D  SING  N  N  41  
8NA  N1N  C2N  SING  Y  N  42  
8NA  C5N  C4N  DOUB  Y  N  43  
8NA  C2N  C3N  DOUB  Y  N  44  
8NA  C4N  C3N  SING  Y  N  45  
8NA  C3N  C7N  SING  N  N  46  
8NA  C7N  O7N  DOUB  N  N  47  
8NA  C7N  N7N  SING  N  N  48  
8NA  O1A  H1   SING  N  N  49  
8NA  C5B  H2   SING  N  N  50  
8NA  C5B  H3   SING  N  N  51  
8NA  C4B  H4   SING  N  N  52  
8NA  C3B  H5   SING  N  N  53  
8NA  O3B  H6   SING  N  N  54  
8NA  C2B  H7   SING  N  N  55  
8NA  O2B  H8   SING  N  N  56  
8NA  C1B  H9   SING  N  N  57  
8NA  C8A  H10  SING  N  N  58  
8NA  N6A  H11  SING  N  N  59  
8NA  N6A  H12  SING  N  N  60  
8NA  C2A  H13  SING  N  N  61  
8NA  C5D  H15  SING  N  N  62  
8NA  C5D  H16  SING  N  N  63  
8NA  C4D  H17  SING  N  N  64  
8NA  C3D  H18  SING  N  N  65  
8NA  O3D  H19  SING  N  N  66  
8NA  C2D  H20  SING  N  N  67  
8NA  O2D  H21  SING  N  N  68  
8NA  C1D  H22  SING  N  N  69  
8NA  C2N  H23  SING  N  N  70  
8NA  N7N  H24  SING  N  N  71  
8NA  N7N  H25  SING  N  N  72  
8NA  C4N  H26  SING  N  N  73  
8NA  C5N  H27  SING  N  N  74  
8NA  C6N  H28  SING  N  N  75  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8NA  InChI             InChI                 1.03   "InChI=1S/C21H27N7O14P2/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(32)14(30)11(41-21)6-39-44(36,37)42-43(34,35)38-5-10-13(29)15(31)20(40-10)27-3-1-2-9(4-27)18(23)33/h1-4,7-8,10-11,13-16,20-21,29-32H,5-6H2,(H5-,22,23,24,25,33,34,35,36,37)/t10-,11-,13-,14-,15-,16-,20+,21-/m1/s1"  
8NA  InChIKey          InChI                 1.03   BAWFJGJZGIEFAR-OPDHFMQKSA-N  
8NA  SMILES_CANONICAL  CACTVS                3.385  "NC(=O)c1ccc[n+](c1)[C@H]2O[C@H](CO[P]([O-])(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O"  
8NA  SMILES            CACTVS                3.385  "NC(=O)c1ccc[n+](c1)[CH]2O[CH](CO[P]([O-])(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O"  
8NA  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "c1cc(c[n+](c1)[C@@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)([O-])OP(=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)O)O)C(=O)N"  
8NA  SMILES            "OpenEye OEToolkits"  1.7.6  "c1cc(c[n+](c1)C2C(C(C(O2)COP(=O)([O-])OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)O)O)C(=O)N"  
#
_pdbx_chem_comp_identifier.comp_id          8NA
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  1.7.6
_pdbx_chem_comp_identifier.identifier       "[(2R,3S,4R,5S)-5-(3-aminocarbonylpyridin-1-ium-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8NA  "Create component"  2013-08-29  PDBJ  
8NA  "Initial release"   2014-08-13  RCSB  
8NA  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     8NA
_pdbx_chem_comp_synonyms.name        alpha-NAD
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
