data_8JA
# 
_chem_comp.id                                    8JA 
_chem_comp.name                                  "N-[2,4-bis(oxidanylidene)-1H-pyrimidin-5-yl]-N'-oxidanyl-octanediamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H18 N4 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-12-17 
_chem_comp.pdbx_modified_date                    2024-05-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        298.295 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8JA 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8JIG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8JA C10 C1  C 0 1 N N N N N N 63.931 8.967  -11.254 -1.730 0.530  -0.068 C10 8JA 1  
8JA C13 C2  C 0 1 N N N N N N 64.947 6.673  -11.113 0.710  0.134  0.120  C13 8JA 2  
8JA C15 C3  C 0 1 N N N N N N 63.926 5.896  -8.953  3.172  -0.255 0.302  C15 8JA 3  
8JA C17 C4  C 0 1 N N N N N N 63.903 3.864  -7.474  5.633  -0.643 0.484  C17 8JA 4  
8JA C02 C5  C 0 1 N N N N N N 62.869 12.234 -11.655 -4.459 -0.670 -0.632 C02 8JA 5  
8JA C04 C6  C 0 1 N N N N N N 62.706 13.420 -9.659  -6.563 -0.418 0.355  C04 8JA 6  
8JA C07 C7  C 0 1 N N N N N N 62.829 11.079 -9.567  -5.016 1.359  0.503  C07 8JA 7  
8JA C08 C8  C 0 1 N N N N N N 62.901 11.031 -10.966 -4.110 0.636  -0.196 C08 8JA 8  
8JA C12 C9  C 0 1 N N N N N N 63.734 7.488  -11.506 -0.371 1.036  -0.477 C12 8JA 9  
8JA C14 C10 C 0 1 N N N N N N 65.108 6.573  -9.612  2.090  0.647  -0.296 C14 8JA 10 
8JA C16 C11 C 0 1 N N N N N N 64.094 4.394  -8.878  4.551  0.259  -0.114 C16 8JA 11 
8JA C18 C12 C 0 1 N N N N N N 62.662 4.425  -6.814  6.992  -0.138 0.074  C18 8JA 12 
8JA N03 N1  N 0 1 N N N N N N 62.774 13.376 -10.984 -5.682 -1.159 -0.342 N03 8JA 13 
8JA N06 N2  N 0 1 N N N N N N 62.733 12.282 -8.952  -6.248 0.820  0.775  N06 8JA 14 
8JA N09 N3  N 0 1 N N N N N N 62.997 9.860  -11.615 -2.841 1.169  -0.485 N09 8JA 15 
8JA N20 N4  N 0 1 N N N N N N 62.689 5.595  -6.159  8.103  -0.780 0.487  N20 8JA 16 
8JA O01 O1  O 0 1 N N N N N N 62.929 12.243 -12.868 -3.664 -1.340 -1.267 O01 8JA 17 
8JA O05 O2  O 0 1 N N N N N N 62.620 14.489 -9.088  -7.661 -0.875 0.608  O05 8JA 18 
8JA O11 O3  O 0 1 N N N N N N 65.055 9.430  -10.657 -1.825 -0.455 0.634  O11 8JA 19 
8JA O19 O4  O 0 1 N N N N N N 61.480 3.763  -6.861  7.086  0.847  -0.627 O19 8JA 20 
8JA O21 O5  O 0 1 N N N N N N 63.249 5.670  -4.913  9.380  -0.305 0.102  O21 8JA 21 
8JA H1  H1  H 0 1 N N N N N N 64.841 5.659  -11.526 0.632  0.144  1.208  H1  8JA 22 
8JA H2  H2  H 0 1 N N N N N N 65.845 7.149  -11.534 0.576  -0.885 -0.244 H2  8JA 23 
8JA H3  H3  H 0 1 N N N N N N 63.816 6.291  -7.932  3.093  -0.245 1.389  H3  8JA 24 
8JA H4  H4  H 0 1 N N N N N N 63.020 6.122  -9.534  3.038  -1.273 -0.062 H4  8JA 25 
8JA H5  H5  H 0 1 N N N N N N 63.816 2.768  -7.518  5.554  -0.633 1.571  H5  8JA 26 
8JA H6  H6  H 0 1 N N N N N N 64.780 4.138  -6.870  5.499  -1.662 0.120  H6  8JA 27 
8JA H7  H7  H 0 1 N N N N N N 62.850 10.168 -8.987  -4.771 2.354  0.844  H7  8JA 28 
8JA H8  H8  H 0 1 N N N N N N 62.870 7.141  -10.920 -0.293 1.026  -1.565 H8  8JA 29 
8JA H9  H9  H 0 1 N N N N N N 63.536 7.335  -12.577 -0.237 2.054  -0.113 H9  8JA 30 
8JA H10 H10 H 0 1 N N N N N N 66.016 5.993  -9.391  2.169  0.637  -1.383 H10 8JA 31 
8JA H11 H11 H 0 1 N N N N N N 65.211 7.587  -9.199  2.224  1.666  0.069  H11 8JA 32 
8JA H12 H12 H 0 1 N N N N N N 63.352 3.922  -9.538  4.630  0.248  -1.201 H12 8JA 33 
8JA H13 H13 H 0 1 N N N N N N 65.107 4.134  -9.219  4.685  1.277  0.250  H13 8JA 34 
8JA H14 H14 H 0 1 N N N N N N 62.753 14.235 -11.496 -5.928 -2.050 -0.637 H14 8JA 35 
8JA H16 H16 H 0 1 N N N N N N 62.372 9.653  -12.368 -2.766 1.997  -0.985 H16 8JA 36 
8JA H17 H17 H 0 1 N N N N N N 62.299 6.413  -6.582  8.027  -1.568 1.048  H17 8JA 37 
8JA H18 H18 H 0 1 N N N N N N 63.188 6.562  -4.591  10.115 -0.830 0.446  H18 8JA 38 
8JA H15 H15 H 0 1 N N N N N N 62.681 12.322 -7.954  -6.899 1.337  1.276  H15 8JA 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8JA O01 C02 DOUB N N 1  
8JA C02 N03 SING N N 2  
8JA C02 C08 SING N N 3  
8JA N09 C10 SING N N 4  
8JA N09 C08 SING N N 5  
8JA C12 C10 SING N N 6  
8JA C12 C13 SING N N 7  
8JA C10 O11 DOUB N N 8  
8JA C13 C14 SING N N 9  
8JA N03 C04 SING N N 10 
8JA C08 C07 DOUB N N 11 
8JA C04 O05 DOUB N N 12 
8JA C04 N06 SING N N 13 
8JA C14 C15 SING N N 14 
8JA C07 N06 SING N N 15 
8JA C15 C16 SING N N 16 
8JA C16 C17 SING N N 17 
8JA C17 C18 SING N N 18 
8JA O19 C18 DOUB N N 19 
8JA C18 N20 SING N N 20 
8JA N20 O21 SING N N 21 
8JA C13 H1  SING N N 22 
8JA C13 H2  SING N N 23 
8JA C15 H3  SING N N 24 
8JA C15 H4  SING N N 25 
8JA C17 H5  SING N N 26 
8JA C17 H6  SING N N 27 
8JA C07 H7  SING N N 28 
8JA C12 H8  SING N N 29 
8JA C12 H9  SING N N 30 
8JA C14 H10 SING N N 31 
8JA C14 H11 SING N N 32 
8JA C16 H12 SING N N 33 
8JA C16 H13 SING N N 34 
8JA N03 H14 SING N N 35 
8JA N09 H16 SING N N 36 
8JA N20 H17 SING N N 37 
8JA O21 H18 SING N N 38 
8JA N06 H15 SING N N 39 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8JA InChI            InChI                1.03  "InChI=1S/C12H18N4O5/c17-9(5-3-1-2-4-6-10(18)16-21)14-8-7-13-12(20)15-11(8)19/h7,21H,1-6H2,(H,14,17)(H,16,18)(H2,13,15,19,20)" 
8JA InChIKey         InChI                1.03  XGGQCNFMILXRKW-UHFFFAOYSA-N                                                                                                    
8JA SMILES_CANONICAL CACTVS               3.385 "ONC(=O)CCCCCCC(=O)NC1=CNC(=O)NC1=O"                                                                                           
8JA SMILES           CACTVS               3.385 "ONC(=O)CCCCCCC(=O)NC1=CNC(=O)NC1=O"                                                                                           
8JA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1=C(C(=O)NC(=O)N1)NC(=O)CCCCCCC(=O)NO"                                                                                       
8JA SMILES           "OpenEye OEToolkits" 2.0.7 "C1=C(C(=O)NC(=O)N1)NC(=O)CCCCCCC(=O)NO"                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           8JA 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[2,4-bis(oxidanylidene)-1~{H}-pyrimidin-5-yl]-~{N}'-oxidanyl-octanediamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8JA "Create component"              2021-12-17 PDBJ 
8JA "Modify linking type"           2022-01-18 PDBJ 
8JA "Modify name"                   2022-01-18 PDBJ 
8JA "Modify model coordinates code" 2024-05-20 PDBJ 
8JA "Initial release"               2024-05-29 RCSB 
# 
