data_83A
#

_chem_comp.id                                   83A
_chem_comp.name                                 "N-(4-{[2-(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-6-yl)ethyl]amino}benzene-1-carbonyl)-L-glutamic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H22 N6 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "antifolate AGF183"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-03-28
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       442.425
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    83A
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5IZQ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
83A  C1   C1   C  0  1  Y  N  N   -4.343  22.096   -7.122   6.258  -0.012   0.691  C1   83A   1  
83A  N1   N1   N  0  1  N  N  N   -3.767  21.408   -9.279   7.895  -1.639   1.242  N1   83A   2  
83A  O1   O1   O  0  1  N  N  N   -5.939  21.229   -8.643   7.128  -0.227   2.799  O1   83A   3  
83A  C2   C2   C  0  1  N  N  N   -4.790  21.570   -8.366   7.106  -0.617   1.645  C2   83A   4  
83A  N2   N2   N  0  1  N  N  N   -1.982  22.161   -7.880   7.079  -1.506  -0.950  N2   83A   5  
83A  O2   O2   O  0  1  N  N  N  -10.431  20.817    2.001  -4.980   2.267  -0.663  O2   83A   6  
83A  C3   C3   C  0  1  N  N  N   -2.445  21.699   -9.045   7.860  -2.063  -0.053  C3   83A   7  
83A  N3   N3   N  0  1  N  N  N   -1.599  21.520  -10.058   8.670  -3.103  -0.433  N3   83A   8  
83A  O3   O3   O  0  1  N  N  N  -10.289  16.568    2.110  -5.633   1.215   2.423  O3   83A   9  
83A  C4   C4   C  0  1  Y  N  N   -2.948  22.339   -6.958   6.264  -0.490  -0.627  C4   83A  10  
83A  N4   N4   N  0  1  Y  N  N   -2.766  22.767   -5.676   5.364   0.254  -1.332  N4   83A  11  
83A  O4   O4   O  0  1  N  N  N  -12.504  16.386    2.278  -7.683   0.452   2.112  O4   83A  12  
83A  C5   C5   C  0  1  Y  N  N   -3.977  22.800   -5.034   4.782   1.189  -0.513  C5   83A  13  
83A  N5   N5   N  0  1  N  N  N   -5.931  22.515   -2.064   1.332   2.608  -1.049  N5   83A  14  
83A  O5   O5   O  0  1  N  N  N  -14.414  18.896   -1.836  -5.720  -4.354  -1.941  O5   83A  15  
83A  C6   C6   C  0  1  Y  N  N   -4.950  22.417   -5.881   5.284   1.077   0.728  C6   83A  16  
83A  N6   N6   N  0  1  N  N  N  -10.338  18.897    0.834  -4.513   0.292   0.240  N6   83A  17  
83A  O6   O6   O  0  1  N  N  N  -13.204  20.452   -2.830  -6.366  -4.145   0.162  O6   83A  18  
83A  C7   C7   C  0  1  N  N  N   -4.199  23.103   -3.594   3.739   2.189  -0.941  C7   83A  19  
83A  C8   C8   C  0  1  N  N  N   -4.869  21.959   -2.860   2.346   1.636  -0.633  C8   83A  20  
83A  C9   C9   C  0  1  Y  N  N   -6.791  21.831   -1.253  -0.017   2.325  -0.868  C9   83A  21  
83A  C10  C10  C  0  1  Y  N  N   -6.736  20.470   -0.991  -0.980   3.249  -1.264  C10  83A  22  
83A  C11  C11  C  0  1  Y  N  N   -7.674  19.861   -0.182  -2.316   2.972  -1.087  C11  83A  23  
83A  C12  C12  C  0  1  Y  N  N   -8.717  20.623    0.376  -2.707   1.761  -0.509  C12  83A  24  
83A  C13  C13  C  0  1  Y  N  N   -8.756  21.979    0.123  -1.738   0.834  -0.113  C13  83A  25  
83A  C14  C14  C  0  1  Y  N  N   -7.821  22.578   -0.677  -0.403   1.115  -0.297  C14  83A  26  
83A  C15  C15  C  0  1  N  N  N   -9.884  20.113    1.156  -4.138   1.461  -0.318  C15  83A  27  
83A  C16  C16  C  0  1  N  N  S  -11.605  18.403    1.342  -5.935  -0.006   0.430  C16  83A  28  
83A  C17  C17  C  0  1  N  N  N  -11.455  16.999    1.957  -6.405   0.599   1.728  C17  83A  29  
83A  C18  C18  C  0  1  N  N  N  -12.669  18.455    0.245  -6.137  -1.522   0.470  C18  83A  30  
83A  C19  C19  C  0  1  N  N  N  -12.354  19.497   -0.830  -5.777  -2.121  -0.891  C19  83A  31  
83A  C20  C20  C  0  1  N  N  N  -13.403  19.625   -1.916  -5.976  -3.614  -0.851  C20  83A  32  
83A  H1   H1   H  0  1  N  N  N   -4.007  21.051  -10.182   8.484  -2.075   1.878  H1   83A  33  
83A  H2   H2   H  0  1  N  N  N   -0.628  21.731   -9.942   9.256  -3.524   0.215  H2   83A  34  
83A  H3   H3   H  0  1  N  N  N   -1.934  21.175  -10.935   8.658  -3.417  -1.351  H3   83A  35  
83A  H4   H4   H  0  1  N  N  N   -1.888  23.017   -5.268   5.164   0.138  -2.274  H4   83A  36  
83A  H5   H5   H  0  1  N  N  N  -12.277  15.544    2.655  -7.938   0.857   2.952  H5   83A  37  
83A  H6   H6   H  0  1  N  N  N   -5.484  23.179   -1.465   1.602   3.448  -1.451  H6   83A  38  
83A  H7   H7   H  0  1  N  N  N  -14.991  19.073   -2.570  -5.863  -5.308  -1.867  H7   83A  39  
83A  H8   H8   H  0  1  N  N  N   -6.005  22.364   -5.656   5.020   1.677   1.587  H8   83A  40  
83A  H9   H9   H  0  1  N  N  N   -9.793  18.315    0.230  -3.842  -0.351   0.515  H9   83A  41  
83A  H10  H10  H  0  1  N  N  N   -3.226  23.305   -3.121   3.887   3.123  -0.399  H10  83A  42  
83A  H11  H11  H  0  1  N  N  N   -4.837  23.995   -3.515   3.829   2.372  -2.012  H11  83A  43  
83A  H12  H12  H  0  1  N  N  N   -5.280  21.239   -3.583   2.257   1.453   0.438  H12  83A  44  
83A  H13  H13  H  0  1  N  N  N   -4.140  21.452   -2.211   2.198   0.701  -1.175  H13  83A  45  
83A  H14  H14  H  0  1  N  N  N   -5.946  19.877   -1.427  -0.678   4.185  -1.711  H14  83A  46  
83A  H15  H15  H  0  1  N  N  N   -7.608  18.803    0.022  -3.062   3.690  -1.394  H15  83A  47  
83A  H16  H16  H  0  1  N  N  N   -9.539  22.578    0.564  -2.036  -0.102   0.335  H16  83A  48  
83A  H17  H17  H  0  1  N  N  N   -7.880  23.640   -0.865   0.346   0.398   0.005  H17  83A  49  
83A  H18  H18  H  0  1  N  N  N  -11.936  19.075    2.148  -6.508   0.416  -0.396  H18  83A  50  
83A  H19  H19  H  0  1  N  N  N  -13.637  18.704    0.704  -5.496  -1.954   1.239  H19  83A  51  
83A  H20  H20  H  0  1  N  N  N  -12.733  17.465   -0.231  -7.180  -1.743   0.700  H20  83A  52  
83A  H21  H21  H  0  1  N  N  N  -11.401  19.221   -1.305  -6.418  -1.689  -1.659  H21  83A  53  
83A  H22  H22  H  0  1  N  N  N  -12.249  20.475   -0.338  -4.735  -1.899  -1.120  H22  83A  54  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
83A  N3   C3   SING  N  N   1  
83A  N1   C3   SING  N  N   2  
83A  N1   C2   SING  N  N   3  
83A  C3   N2   DOUB  N  N   4  
83A  O1   C2   DOUB  N  N   5  
83A  C2   C1   SING  N  N   6  
83A  N2   C4   SING  N  N   7  
83A  C1   C4   DOUB  Y  N   8  
83A  C1   C6   SING  Y  N   9  
83A  C4   N4   SING  Y  N  10  
83A  C6   C5   DOUB  Y  N  11  
83A  N4   C5   SING  Y  N  12  
83A  C5   C7   SING  N  N  13  
83A  C7   C8   SING  N  N  14  
83A  C8   N5   SING  N  N  15  
83A  O6   C20  DOUB  N  N  16  
83A  N5   C9   SING  N  N  17  
83A  C20  O5   SING  N  N  18  
83A  C20  C19  SING  N  N  19  
83A  C9   C10  DOUB  Y  N  20  
83A  C9   C14  SING  Y  N  21  
83A  C10  C11  SING  Y  N  22  
83A  C19  C18  SING  N  N  23  
83A  C14  C13  DOUB  Y  N  24  
83A  C11  C12  DOUB  Y  N  25  
83A  C13  C12  SING  Y  N  26  
83A  C18  C16  SING  N  N  27  
83A  C12  C15  SING  N  N  28  
83A  N6   C15  SING  N  N  29  
83A  N6   C16  SING  N  N  30  
83A  C15  O2   DOUB  N  N  31  
83A  C16  C17  SING  N  N  32  
83A  C17  O3   DOUB  N  N  33  
83A  C17  O4   SING  N  N  34  
83A  N1   H1   SING  N  N  35  
83A  N3   H2   SING  N  N  36  
83A  N3   H3   SING  N  N  37  
83A  N4   H4   SING  N  N  38  
83A  O4   H5   SING  N  N  39  
83A  N5   H6   SING  N  N  40  
83A  O5   H7   SING  N  N  41  
83A  C6   H8   SING  N  N  42  
83A  N6   H9   SING  N  N  43  
83A  C7   H10  SING  N  N  44  
83A  C7   H11  SING  N  N  45  
83A  C8   H12  SING  N  N  46  
83A  C8   H13  SING  N  N  47  
83A  C10  H14  SING  N  N  48  
83A  C11  H15  SING  N  N  49  
83A  C13  H16  SING  N  N  50  
83A  C14  H17  SING  N  N  51  
83A  C16  H18  SING  N  N  52  
83A  C18  H19  SING  N  N  53  
83A  C18  H20  SING  N  N  54  
83A  C19  H21  SING  N  N  55  
83A  C19  H22  SING  N  N  56  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
83A  SMILES            ACDLabs               12.01  "c31c(N=C(NC1=O)N)nc(CCNc2ccc(C(=O)NC(C(=O)O)CCC(O)=O)cc2)c3"  
83A  InChI             InChI                 1.03   "InChI=1S/C20H22N6O6/c21-20-25-16-13(18(30)26-20)9-12(23-16)7-8-22-11-3-1-10(2-4-11)17(29)24-14(19(31)32)5-6-15(27)28/h1-4,9,14,22H,5-8H2,(H,24,29)(H,27,28)(H,31,32)(H4,21,23,25,26,30)/t14-/m0/s1"  
83A  InChIKey          InChI                 1.03   UFNWIIALSMNORN-AWEZNQCLSA-N  
83A  SMILES_CANONICAL  CACTVS                3.385  "NC1=Nc2[nH]c(CCNc3ccc(cc3)C(=O)N[C@@H](CCC(O)=O)C(O)=O)cc2C(=O)N1"  
83A  SMILES            CACTVS                3.385  "NC1=Nc2[nH]c(CCNc3ccc(cc3)C(=O)N[CH](CCC(O)=O)C(O)=O)cc2C(=O)N1"  
83A  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.4  "c1cc(ccc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)NCCc2cc3c([nH]2)N=C(NC3=O)N"  
83A  SMILES            "OpenEye OEToolkits"  2.0.4  "c1cc(ccc1C(=O)NC(CCC(=O)O)C(=O)O)NCCc2cc3c([nH]2)N=C(NC3=O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
83A  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-(4-{[2-(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-6-yl)ethyl]amino}benzene-1-carbonyl)-L-glutamic acid"  
83A  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.4  "(2~{S})-2-[[4-[2-(2-azanyl-4-oxidanylidene-3,7-dihydropyrrolo[2,3-d]pyrimidin-6-yl)ethylamino]phenyl]carbonylamino]pentanedioic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
83A  "Create component"  2016-03-28  RCSB  
83A  "Initial release"   2016-08-10  RCSB  
83A  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     83A
_pdbx_chem_comp_synonyms.name        "antifolate AGF183"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
