data_7VA
# 
_chem_comp.id                                    7VA 
_chem_comp.name                                  "(5S)-5-({4-[(6-methoxy-1-methyl-1H-benzimidazol-2-yl)methoxy]phenyl}methyl)-1,3-thiazolidine-2,4-dione" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H19 N3 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-12-07 
_chem_comp.pdbx_modified_date                    2017-08-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        397.448 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     7VA 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5U5L 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
7VA C10 C1  C 0 1 Y N N -6.135  28.631 130.227 2.699   -0.217 -1.369 C10 7VA 1  
7VA C13 C2  C 0 1 Y N N -8.820  29.246 129.932 1.066   -1.492 0.468  C13 7VA 2  
7VA C17 C3  C 0 1 Y N N -7.850  30.609 125.852 -3.067  -0.782 0.279  C17 7VA 3  
7VA C20 C4  C 0 1 Y N N -8.604  32.589 125.347 -5.123  -0.851 -0.424 C20 7VA 4  
7VA C22 C5  C 0 1 Y N N -6.825  33.491 123.979 -6.126  1.036  0.706  C22 7VA 5  
7VA C24 C6  C 0 1 Y N N -8.789  34.834 124.416 -7.437  -0.345 -0.767 C24 7VA 6  
7VA C26 C7  C 0 1 N N N -5.670  30.602 124.685 -3.106  1.225  1.806  C26 7VA 7  
7VA C28 C8  C 0 1 N N N -6.949  36.949 123.707 -9.638  1.154  -0.313 C28 7VA 8  
7VA N01 N1  N 0 1 N N N -5.334  31.875 134.698 7.637   0.462  0.253  N01 7VA 9  
7VA C02 C9  C 0 1 N N N -6.028  30.651 134.587 6.866   -0.520 0.689  C02 7VA 10 
7VA C03 C10 C 0 1 N N S -5.769  30.052 133.279 5.385   -0.248 0.535  C03 7VA 11 
7VA S04 S1  S 0 1 N N N -4.735  31.108 132.483 5.350   1.410  -0.227 S04 7VA 12 
7VA C05 C11 C 0 1 N N N -4.612  32.235 133.652 7.115   1.576  -0.263 C05 7VA 13 
7VA O06 O1  O 0 1 N N N -3.971  33.227 133.577 7.737   2.531  -0.687 O06 7VA 14 
7VA O07 O2  O 0 1 N N N -6.717  30.184 135.429 7.304   -1.544 1.167  O07 7VA 15 
7VA C08 C12 C 0 1 N N N -6.319  28.723 132.755 4.738   -1.284 -0.386 C08 7VA 16 
7VA C09 C13 C 0 1 Y N N -6.922  28.843 131.351 3.247   -1.062 -0.422 C09 7VA 17 
7VA C11 C14 C 0 1 Y N N -6.690  28.732 128.957 1.334   -0.007 -1.401 C11 7VA 18 
7VA C12 C15 C 0 1 Y N N -8.036  29.041 128.808 0.513   -0.645 -0.482 C12 7VA 19 
7VA C14 C16 C 0 1 Y N N -8.266  29.145 131.199 2.431   -1.702 0.492  C14 7VA 20 
7VA O15 O3  O 0 1 N N N -8.625  29.146 127.536 -0.830  -0.440 -0.512 O15 7VA 21 
7VA C16 C17 C 0 1 N N N -7.745  29.204 126.447 -1.613  -1.129 0.465  C16 7VA 22 
7VA N18 N2  N 0 1 Y N N -6.933  31.191 125.093 -3.703  0.262  0.878  N18 7VA 23 
7VA C19 C18 C 0 1 Y N N -7.375  32.437 124.758 -5.016  0.244  0.450  C19 7VA 24 
7VA N21 N3  N 0 1 Y N N -8.873  31.434 126.021 -3.897  -1.433 -0.483 N21 7VA 25 
7VA C23 C19 C 0 1 Y N N -7.535  34.678 123.815 -7.333  0.740  0.098  C23 7VA 26 
7VA C25 C20 C 0 1 Y N N -9.329  33.802 125.180 -6.352  -1.133 -1.028 C25 7VA 27 
7VA O27 O4  O 0 1 N N N -6.989  35.715 123.046 -8.423  1.514  0.347  O27 7VA 28 
7VA H1  H1  H 0 1 N N N -5.089  28.387 130.340 3.338   0.282  -2.082 H1  7VA 29 
7VA H2  H2  H 0 1 N N N -9.867  29.486 129.821 0.430   -1.992 1.182  H2  7VA 30 
7VA H3  H3  H 0 1 N N N -5.857  33.372 123.515 -6.048  1.878  1.378  H3  7VA 31 
7VA H4  H4  H 0 1 N N N -9.338  35.755 124.287 -8.384  -0.567 -1.236 H4  7VA 32 
7VA H5  H5  H 0 1 N N N -5.585  29.589 125.105 -2.707  2.071  1.245  H5  7VA 33 
7VA H6  H6  H 0 1 N N N -5.628  30.549 123.587 -3.866  1.578  2.503  H6  7VA 34 
7VA H7  H7  H 0 1 N N N -4.840  31.223 125.054 -2.300  0.744  2.360  H7  7VA 35 
7VA H8  H8  H 0 1 N N N -6.510  37.708 123.042 -9.491  1.194  -1.392 H8  7VA 36 
7VA H9  H9  H 0 1 N N N -7.970  37.250 123.983 -9.924  0.143  -0.022 H9  7VA 37 
7VA H10 H10 H 0 1 N N N -6.335  36.858 124.615 -10.426 1.850  -0.028 H10 7VA 38 
7VA H11 H11 H 0 1 N N N -5.386  32.438 135.523 8.601   0.372  0.314  H11 7VA 39 
7VA H12 H12 H 0 1 N N N -7.100  28.370 133.444 5.145   -1.182 -1.391 H12 7VA 40 
7VA H13 H13 H 0 1 N N N -5.499  27.991 132.724 4.946   -2.285 -0.009 H13 7VA 41 
7VA H14 H14 H 0 1 N N N -6.074  28.570 128.085 0.906   0.653  -2.141 H14 7VA 42 
7VA H15 H15 H 0 1 N N N -8.884  29.302 132.071 2.862   -2.361 1.231  H15 7VA 43 
7VA H16 H16 H 0 1 N N N -8.028  28.454 125.694 -1.293  -0.831 1.464  H16 7VA 44 
7VA H17 H17 H 0 1 N N N -6.715  29.014 126.784 -1.477  -2.204 0.347  H17 7VA 45 
7VA H18 H18 H 0 1 N N N -10.296 33.922 125.645 -6.443  -1.972 -1.701 H18 7VA 46 
7VA H19 H19 H 0 1 N N N -6.638  30.581 132.860 4.892   -0.236 1.507  H19 7VA 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
7VA O27 C28 SING N N 1  
7VA O27 C23 SING N N 2  
7VA C23 C22 DOUB Y N 3  
7VA C23 C24 SING Y N 4  
7VA C22 C19 SING Y N 5  
7VA C24 C25 DOUB Y N 6  
7VA C26 N18 SING N N 7  
7VA C19 N18 SING Y N 8  
7VA C19 C20 DOUB Y N 9  
7VA N18 C17 SING Y N 10 
7VA C25 C20 SING Y N 11 
7VA C20 N21 SING Y N 12 
7VA C17 N21 DOUB Y N 13 
7VA C17 C16 SING N N 14 
7VA C16 O15 SING N N 15 
7VA O15 C12 SING N N 16 
7VA C12 C11 DOUB Y N 17 
7VA C12 C13 SING Y N 18 
7VA C11 C10 SING Y N 19 
7VA C13 C14 DOUB Y N 20 
7VA C10 C09 DOUB Y N 21 
7VA C14 C09 SING Y N 22 
7VA C09 C08 SING N N 23 
7VA S04 C03 SING N N 24 
7VA S04 C05 SING N N 25 
7VA C08 C03 SING N N 26 
7VA C03 C02 SING N N 27 
7VA O06 C05 DOUB N N 28 
7VA C05 N01 SING N N 29 
7VA C02 N01 SING N N 30 
7VA C02 O07 DOUB N N 31 
7VA C10 H1  SING N N 32 
7VA C13 H2  SING N N 33 
7VA C22 H3  SING N N 34 
7VA C24 H4  SING N N 35 
7VA C26 H5  SING N N 36 
7VA C26 H6  SING N N 37 
7VA C26 H7  SING N N 38 
7VA C28 H8  SING N N 39 
7VA C28 H9  SING N N 40 
7VA C28 H10 SING N N 41 
7VA N01 H11 SING N N 42 
7VA C08 H12 SING N N 43 
7VA C08 H13 SING N N 44 
7VA C11 H14 SING N N 45 
7VA C14 H15 SING N N 46 
7VA C16 H16 SING N N 47 
7VA C16 H17 SING N N 48 
7VA C25 H18 SING N N 49 
7VA C03 H19 SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
7VA SMILES           ACDLabs              12.01 "c2c(CC1C(NC(S1)=O)=O)ccc(c2)OCc4nc3c(cc(cc3)OC)n4C"                                                                                                 
7VA InChI            InChI                1.03  "InChI=1S/C20H19N3O4S/c1-23-16-10-14(26-2)7-8-15(16)21-18(23)11-27-13-5-3-12(4-6-13)9-17-19(24)22-20(25)28-17/h3-8,10,17H,9,11H2,1-2H3,(H,22,24,25)" 
7VA InChIKey         InChI                1.03  XMSXOLDPMGMWTH-UHFFFAOYSA-N                                                                                                                          
7VA SMILES_CANONICAL CACTVS               3.385 "COc1ccc2nc(COc3ccc(C[C@@H]4SC(=O)NC4=O)cc3)n(C)c2c1"                                                                                                
7VA SMILES           CACTVS               3.385 "COc1ccc2nc(COc3ccc(C[CH]4SC(=O)NC4=O)cc3)n(C)c2c1"                                                                                                  
7VA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cn1c2cc(ccc2nc1COc3ccc(cc3)CC4C(=O)NC(=O)S4)OC"                                                                                                     
7VA SMILES           "OpenEye OEToolkits" 2.0.6 "Cn1c2cc(ccc2nc1COc3ccc(cc3)CC4C(=O)NC(=O)S4)OC"                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
7VA "SYSTEMATIC NAME" ACDLabs              12.01 "(5S)-5-({4-[(6-methoxy-1-methyl-1H-benzimidazol-2-yl)methoxy]phenyl}methyl)-1,3-thiazolidine-2,4-dione" 
7VA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "5-[[4-[(6-methoxy-1-methyl-benzimidazol-2-yl)methoxy]phenyl]methyl]-1,3-thiazolidine-2,4-dione"         
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
7VA "Create component" 2016-12-07 RCSB 
7VA "Initial release"  2017-08-23 RCSB 
# 
