data_6WA
#

_chem_comp.id                                   6WA
_chem_comp.name                                 "3-[(4-oxidanylidene-3,5-dihydropyrrolo[3,2-d]pyrimidin-7-yl)methyl-(3-phosphonopropyl)amino]propylphosphonic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C13 H22 N4 O7 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "9-[N,N-(Bis-3-phosphonopropyl)aminomethyl]-9-deazahypoxanthine"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-07-08
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       408.284
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    6WA
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5KNU
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6WA  OAD  O1   O  0  1  N  N  N   -3.080  29.400  -42.933   4.754   0.947   1.929  OAD  6WA   1  
6WA  PAY  P1   P  0  1  N  N  N   -3.969  30.621  -43.024   4.864   1.693   0.506  PAY  6WA   2  
6WA  OAE  O2   O  0  1  N  N  N   -4.191  30.990  -44.475   4.347   3.074   0.632  OAE  6WA   3  
6WA  OAB  O3   O  0  1  N  N  N   -3.290  31.774  -42.317   6.405   1.737   0.041  OAB  6WA   4  
6WA  CAN  C1   C  0  1  N  N  N   -5.579  30.268  -42.227   3.881   0.786  -0.733  CAN  6WA   5  
6WA  CAJ  C2   C  0  1  N  N  N   -6.233  28.983  -42.766   2.400   0.852  -0.356  CAJ  6WA   6  
6WA  CAL  C3   C  0  1  N  N  N   -7.409  28.520  -41.873   1.575   0.091  -1.396  CAL  6WA   7  
6WA  NAX  N1   N  0  1  N  N  N   -8.032  27.293  -42.375   0.153   0.154  -1.034  NAX  6WA   8  
6WA  CAM  C4   C  0  1  N  N  N   -8.484  27.558  -43.748  -0.354   1.530  -1.124  CAM  6WA   9  
6WA  CAK  C5   C  0  1  N  N  N   -9.925  27.031  -43.936  -1.685   1.634  -0.377  CAK  6WA  10  
6WA  CAO  C6   C  0  1  N  N  N  -10.773  27.979  -44.800  -2.227   3.059  -0.497  CAO  6WA  11  
6WA  PAZ  P2   P  0  1  N  N  N  -12.285  27.147  -45.407  -3.879   3.148   0.270  PAZ  6WA  12  
6WA  OAF  O4   O  0  1  N  N  N  -11.930  26.280  -46.596  -3.796   2.687   1.674  OAF  6WA  13  
6WA  OAG  O5   O  0  1  N  N  N  -12.865  26.283  -44.306  -4.406   4.668   0.234  OAG  6WA  14  
6WA  OAC  O6   O  0  1  N  N  N  -13.297  28.195  -45.815  -4.900   2.206  -0.544  OAC  6WA  15  
6WA  CAP  C7   C  0  1  N  N  N   -7.093  26.175  -42.436  -0.644  -0.756  -1.868  CAP  6WA  16  
6WA  CAT  C8   C  0  1  Y  N  N   -6.521  25.890  -41.031  -0.433  -2.175  -1.406  CAT  6WA  17  
6WA  CAV  C9   C  0  1  Y  N  N   -7.207  25.274  -39.932  -0.983  -2.761  -0.246  CAV  6WA  18  
6WA  NAQ  N2   N  0  1  N  N  N   -8.462  24.775  -39.742  -1.794  -2.312   0.742  NAQ  6WA  19  
6WA  CAH  C10  C  0  1  N  N  N   -8.810  24.253  -38.572  -2.155  -3.092   1.719  CAH  6WA  20  
6WA  NAR  N3   N  0  1  N  N  N   -7.970  24.192  -37.542  -1.742  -4.383   1.803  NAR  6WA  21  
6WA  CAU  C11  C  0  1  N  N  N   -6.712  24.666  -37.650  -0.931  -4.908   0.859  CAU  6WA  22  
6WA  OAA  O7   O  0  1  N  N  N   -5.821  24.598  -36.555  -0.557  -6.067   0.930  OAA  6WA  23  
6WA  CAW  C12  C  0  1  Y  N  N   -6.276  25.239  -38.883  -0.526  -4.084  -0.212  CAW  6WA  24  
6WA  NAS  N4   N  0  1  Y  N  N   -5.120  25.780  -39.295   0.268  -4.272  -1.318  NAS  6WA  25  
6WA  CAI  C13  C  0  1  Y  N  N   -5.225  26.178  -40.563   0.309  -3.112  -2.031  CAI  6WA  26  
6WA  H1   H1   H  0  1  N  N  N   -2.843  29.115  -43.808   5.075   0.035   1.921  H1   6WA  27  
6WA  H2   H2   H  0  1  N  N  N   -3.147  32.484  -42.932   6.988   2.204   0.655  H2   6WA  28  
6WA  H3   H3   H  0  1  N  N  N   -5.420  30.156  -41.144   4.027   1.239  -1.714  H3   6WA  29  
6WA  H4   H4   H  0  1  N  N  N   -6.257  31.114  -42.412   4.203  -0.254  -0.762  H4   6WA  30  
6WA  H5   H5   H  0  1  N  N  N   -6.610  29.174  -43.781   2.254   0.399   0.625  H5   6WA  31  
6WA  H6   H6   H  0  1  N  N  N   -5.476  28.185  -42.800   2.078   1.893  -0.327  H6   6WA  32  
6WA  H7   H7   H  0  1  N  N  N   -7.031  28.336  -40.856   1.720   0.544  -2.377  H7   6WA  33  
6WA  H8   H8   H  0  1  N  N  N   -8.167  29.316  -41.844   1.897  -0.950  -1.425  H8   6WA  34  
6WA  H10  H10  H  0  1  N  N  N   -7.814  27.050  -44.457   0.368   2.213  -0.677  H10  6WA  35  
6WA  H11  H11  H  0  1  N  N  N   -8.464  28.642  -43.936  -0.503   1.793  -2.171  H11  6WA  36  
6WA  H12  H12  H  0  1  N  N  N  -10.399  26.930  -42.948  -2.400   0.935  -0.810  H12  6WA  37  
6WA  H13  H13  H  0  1  N  N  N   -9.883  26.046  -44.425  -1.531   1.391   0.675  H13  6WA  38  
6WA  H14  H14  H  0  1  N  N  N  -10.175  28.310  -45.662  -1.553   3.749   0.011  H14  6WA  39  
6WA  H15  H15  H  0  1  N  N  N  -11.062  28.852  -44.197  -2.300   3.332  -1.550  H15  6WA  40  
6WA  H16  H16  H  0  1  N  N  N  -12.885  25.377  -44.591  -5.281   4.790   0.627  H16  6WA  41  
6WA  H17  H17  H  0  1  N  N  N  -13.504  28.095  -46.737  -4.947   2.402  -1.490  H17  6WA  42  
6WA  H18  H18  H  0  1  N  N  N   -7.615  25.280  -42.805  -1.699  -0.499  -1.781  H18  6WA  43  
6WA  H19  H19  H  0  1  N  N  N   -6.270  26.428  -43.120  -0.331  -0.663  -2.908  H19  6WA  44  
6WA  H20  H20  H  0  1  N  N  N   -9.810  23.864  -38.452  -2.803  -2.699   2.489  H20  6WA  45  
6WA  H21  H21  H  0  1  N  N  N   -8.275  23.790  -36.678  -2.031  -4.933   2.548  H21  6WA  46  
6WA  H22  H22  H  0  1  N  N  N   -4.298  25.872  -38.732   0.722  -5.096  -1.555  H22  6WA  47  
6WA  H23  H23  H  0  1  N  N  N   -4.441  26.647  -41.139   0.853  -2.965  -2.952  H23  6WA  48  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6WA  OAF  PAZ  DOUB  N  N   1  
6WA  OAC  PAZ  SING  N  N   2  
6WA  PAZ  CAO  SING  N  N   3  
6WA  PAZ  OAG  SING  N  N   4  
6WA  CAO  CAK  SING  N  N   5  
6WA  OAE  PAY  DOUB  N  N   6  
6WA  CAK  CAM  SING  N  N   7  
6WA  CAM  NAX  SING  N  N   8  
6WA  PAY  OAD  SING  N  N   9  
6WA  PAY  OAB  SING  N  N  10  
6WA  PAY  CAN  SING  N  N  11  
6WA  CAJ  CAN  SING  N  N  12  
6WA  CAJ  CAL  SING  N  N  13  
6WA  CAP  NAX  SING  N  N  14  
6WA  CAP  CAT  SING  N  N  15  
6WA  NAX  CAL  SING  N  N  16  
6WA  CAT  CAI  DOUB  Y  N  17  
6WA  CAT  CAV  SING  Y  N  18  
6WA  CAI  NAS  SING  Y  N  19  
6WA  CAV  NAQ  SING  N  N  20  
6WA  CAV  CAW  DOUB  Y  N  21  
6WA  NAQ  CAH  DOUB  N  N  22  
6WA  NAS  CAW  SING  Y  N  23  
6WA  CAW  CAU  SING  N  N  24  
6WA  CAH  NAR  SING  N  N  25  
6WA  CAU  NAR  SING  N  N  26  
6WA  CAU  OAA  DOUB  N  N  27  
6WA  OAD  H1   SING  N  N  28  
6WA  OAB  H2   SING  N  N  29  
6WA  CAN  H3   SING  N  N  30  
6WA  CAN  H4   SING  N  N  31  
6WA  CAJ  H5   SING  N  N  32  
6WA  CAJ  H6   SING  N  N  33  
6WA  CAL  H7   SING  N  N  34  
6WA  CAL  H8   SING  N  N  35  
6WA  CAM  H10  SING  N  N  36  
6WA  CAM  H11  SING  N  N  37  
6WA  CAK  H12  SING  N  N  38  
6WA  CAK  H13  SING  N  N  39  
6WA  CAO  H14  SING  N  N  40  
6WA  CAO  H15  SING  N  N  41  
6WA  OAG  H16  SING  N  N  42  
6WA  OAC  H17  SING  N  N  43  
6WA  CAP  H18  SING  N  N  44  
6WA  CAP  H19  SING  N  N  45  
6WA  CAH  H20  SING  N  N  46  
6WA  NAR  H21  SING  N  N  47  
6WA  NAS  H22  SING  N  N  48  
6WA  CAI  H23  SING  N  N  49  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6WA  InChI             InChI                 1.03   "InChI=1S/C13H22N4O7P2/c18-13-12-11(15-9-16-13)10(7-14-12)8-17(3-1-5-25(19,20)21)4-2-6-26(22,23)24/h7,9,14H,1-6,8H2,(H,15,16,18)(H2,19,20,21)(H2,22,23,24)"  
6WA  InChIKey          InChI                 1.03   UJUSHVYEYJBIDB-UHFFFAOYSA-N  
6WA  SMILES_CANONICAL  CACTVS                3.385  "O[P](O)(=O)CCCN(CCC[P](O)(O)=O)Cc1c[nH]c2C(=O)NC=Nc12"  
6WA  SMILES            CACTVS                3.385  "O[P](O)(=O)CCCN(CCC[P](O)(O)=O)Cc1c[nH]c2C(=O)NC=Nc12"  
6WA  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.5  "c1c(c2c([nH]1)C(=O)NC=N2)CN(CCCP(=O)(O)O)CCCP(=O)(O)O"  
6WA  SMILES            "OpenEye OEToolkits"  2.0.5  "c1c(c2c([nH]1)C(=O)NC=N2)CN(CCCP(=O)(O)O)CCCP(=O)(O)O"  
#
_pdbx_chem_comp_identifier.comp_id          6WA
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.5
_pdbx_chem_comp_identifier.identifier       "3-[(4-oxidanylidene-3,5-dihydropyrrolo[3,2-d]pyrimidin-7-yl)methyl-(3-phosphonopropyl)amino]propylphosphonic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6WA  "Create component"  2016-07-08  RCSB  
6WA  "Modify synonyms"   2016-07-18  RCSB  
6WA  "Initial release"   2017-07-19  RCSB  
6WA  "Modify synonyms"   2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     6WA
_pdbx_chem_comp_synonyms.name        "9-[N,N-(Bis-3-phosphonopropyl)aminomethyl]-9-deazahypoxanthine"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
