data_6JA
# 
_chem_comp.id                                    6JA 
_chem_comp.name                                  "2-[5-ethyl-2,4,6-tris(oxidanylidene)-1,3-diazinan-5-yl]ethyl selenocyanate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H11 N3 O3 Se" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-05-25 
_chem_comp.pdbx_modified_date                    2016-12-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        288.162 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6JA 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5L47 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6JA C   C1  C  0 1 N N N 62.723 -25.601 55.464 3.793  1.687  0.164  C   6JA 1  
6JA N   N1  N  0 1 N N N 60.029 -25.661 53.907 -4.227 -2.158 0.053  N   6JA 2  
6JA O2  O1  O  0 1 N N N 64.054 -24.581 57.655 1.480  0.529  2.368  O2  6JA 3  
6JA C8  C2  C  0 1 N N N 63.337 -25.205 58.424 1.691  0.037  1.280  C8  6JA 4  
6JA N2  N2  N  0 1 N N N 63.741 -25.424 59.716 2.137  -1.231 1.160  N2  6JA 5  
6JA C7  C3  C  0 1 N N N 63.114 -26.217 60.642 2.374  -1.789 -0.033 C7  6JA 6  
6JA O1  O2  O  0 1 N N N 63.521 -26.317 61.796 2.774  -2.936 -0.049 O1  6JA 7  
6JA N1  N3  N  0 1 N N N 62.008 -26.897 60.201 2.201  -1.176 -1.210 N1  6JA 8  
6JA C6  C4  C  0 1 N N N 61.459 -26.831 58.949 1.760  0.097  -1.295 C6  6JA 9  
6JA O   O3  O  0 1 N N N 60.567 -27.617 58.646 1.608  0.639  -2.368 O   6JA 10 
6JA C2  C5  C  0 1 N N N 62.016 -25.804 57.965 1.455  0.821  0.003  C2  6JA 11 
6JA C1  C6  C  0 1 N N N 62.280 -26.509 56.609 2.320  2.082  0.053  C1  6JA 12 
6JA C3  C7  C  0 1 N N N 60.998 -24.647 57.856 -0.011 1.259  -0.024 C3  6JA 13 
6JA C4  C8  C  0 1 N N N 59.608 -25.085 57.508 -0.912 0.023  0.009  C4  6JA 14 
6JA SE  SE1 SE 0 0 N N N 59.563 -26.783 56.530 -2.790 0.584  -0.025 SE  6JA 15 
6JA C5  C9  C  0 1 N N N 59.853 -26.149 54.929 -3.700 -1.152 0.025  C5  6JA 16 
6JA H1  H1  H  0 1 N N N 62.880 -26.204 54.557 3.946  1.106  1.073  H1  6JA 17 
6JA H2  H2  H  0 1 N N N 61.946 -24.847 55.273 4.075  1.087  -0.702 H2  6JA 18 
6JA H3  H3  H  0 1 N N N 63.662 -25.098 55.737 4.409  2.586  0.199  H3  6JA 19 
6JA H4  H4  H  0 1 N N N 64.576 -24.959 60.012 2.292  -1.754 1.962  H4  6JA 20 
6JA H5  H5  H  0 1 N N N 61.558 -27.501 60.859 2.398  -1.661 -2.026 H5  6JA 21 
6JA H6  H6  H  0 1 N N N 61.350 -27.010 56.302 2.038  2.682  0.918  H6  6JA 22 
6JA H7  H7  H  0 1 N N N 63.067 -27.261 56.767 2.167  2.664  -0.857 H7  6JA 23 
6JA H8  H8  H  0 1 N N N 61.346 -23.953 57.077 -0.219 1.884  0.844  H8  6JA 24 
6JA H9  H9  H  0 1 N N N 60.963 -24.125 58.824 -0.204 1.826  -0.935 H9  6JA 25 
6JA H10 H10 H  0 1 N N N 59.142 -24.308 56.884 -0.704 -0.602 -0.859 H10 6JA 26 
6JA H11 H11 H  0 1 N N N 59.034 -25.201 58.439 -0.719 -0.544 0.920  H11 6JA 27 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6JA N  C5  TRIP N N 1  
6JA C5 SE  SING N N 2  
6JA C  C1  SING N N 3  
6JA SE C4  SING N N 4  
6JA C1 C2  SING N N 5  
6JA C4 C3  SING N N 6  
6JA O2 C8  DOUB N N 7  
6JA C3 C2  SING N N 8  
6JA C2 C8  SING N N 9  
6JA C2 C6  SING N N 10 
6JA C8 N2  SING N N 11 
6JA O  C6  DOUB N N 12 
6JA C6 N1  SING N N 13 
6JA N2 C7  SING N N 14 
6JA N1 C7  SING N N 15 
6JA C7 O1  DOUB N N 16 
6JA C  H1  SING N N 17 
6JA C  H2  SING N N 18 
6JA C  H3  SING N N 19 
6JA N2 H4  SING N N 20 
6JA N1 H5  SING N N 21 
6JA C1 H6  SING N N 22 
6JA C1 H7  SING N N 23 
6JA C3 H8  SING N N 24 
6JA C3 H9  SING N N 25 
6JA C4 H10 SING N N 26 
6JA C4 H11 SING N N 27 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6JA InChI            InChI                1.03  "InChI=1S/C9H11N3O3Se/c1-2-9(3-4-16-5-10)6(13)11-8(15)12-7(9)14/h2-4H2,1H3,(H2,11,12,13,14,15)" 
6JA InChIKey         InChI                1.03  LFTCFIKEJOPJTJ-UHFFFAOYSA-N                                                                     
6JA SMILES_CANONICAL CACTVS               3.385 "CCC1(CC[Se]C#N)C(=O)NC(=O)NC1=O"                                                               
6JA SMILES           CACTVS               3.385 "CCC1(CC[Se]C#N)C(=O)NC(=O)NC1=O"                                                               
6JA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "CCC1(C(=O)NC(=O)NC1=O)CC[Se]C#N"                                                               
6JA SMILES           "OpenEye OEToolkits" 2.0.5 "CCC1(C(=O)NC(=O)NC1=O)CC[Se]C#N"                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6JA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "2-[5-ethyl-2,4,6-tris(oxidanylidene)-1,3-diazinan-5-yl]ethyl selenocyanate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6JA "Create component"   2016-05-25 EBI  
6JA "Other modification" 2016-06-02 RCSB 
6JA "Initial release"    2016-12-21 RCSB 
# 
