data_5WA
#

_chem_comp.id                                   5WA
_chem_comp.name                                 "(1R)-3-(2,4-diamino-6-methylpyrimidin-5-yl)-1-(3,4,5-trimethoxyphenyl)prop-2-yn-1-ol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C17 H20 N4 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(R)-2,4-diamino-5-(3-hydroxy-3-(3,4,5-trimethoxyphenyl)prop-1-ynyl)-6-methylpyrimidine"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-09-22
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       344.365
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5WA
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3JWF
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5WA  N1    N1    N  0  1  Y  N  N  21.741  41.944   -7.007  -4.239  -1.849  -0.334  N1    5WA   1  
5WA  C2    C2    C  0  1  Y  N  N  21.297  41.926   -5.744  -5.389  -1.209  -0.176  C2    5WA   2  
5WA  N3    N3    N  0  1  Y  N  N  22.059  42.405   -4.743  -5.440   0.080   0.123  N3    5WA   3  
5WA  C4    C4    C  0  1  Y  N  N  23.279  42.906   -4.987  -4.326   0.787   0.275  C4    5WA   4  
5WA  C5    C5    C  0  1  Y  N  N  23.768  42.924   -6.291  -3.084   0.141   0.115  C5    5WA   5  
5WA  C6    C6    C  0  1  Y  N  N  22.955  42.421   -7.310  -3.083  -1.219  -0.199  C6    5WA   6  
5WA  C1A   C1A   C  0  1  N  N  N  24.809  48.136   -9.382   3.324  -0.536   3.559  C1A   5WA   7  
5WA  C1B   C1B   C  0  1  N  N  N  30.885  44.864  -10.943   2.864   0.603  -3.492  C1B   5WA   8  
5WA  C1C   C1C   C  0  1  N  N  N  26.819  46.312  -13.205   4.470  -2.672  -0.496  C1C   5WA   9  
5WA  C1D   C1D   C  0  1  N  N  N  23.408  42.400   -8.778  -1.784  -1.960  -0.382  C1D   5WA  10  
5WA  N1E   N1E   N  0  1  N  N  N  20.086  41.432   -5.499  -6.572  -1.910  -0.327  N1E   5WA  11  
5WA  N1F   N1F   N  0  1  N  N  N  24.019  43.368   -3.983  -4.384   2.133   0.586  N1F   5WA  12  
5WA  O1G   O1G   O  0  1  N  N  N  27.867  45.380   -6.060   0.466   3.254  -0.395  O1G   5WA  13  
5WA  C1H   C1H   C  0  1  N  N  N  25.077  43.448   -6.569  -1.855   0.860   0.270  C1H   5WA  14  
5WA  C1I   C1I   C  0  1  N  N  N  26.200  43.899   -6.808  -0.849   1.450   0.397  C1I   5WA  15  
5WA  C1J   C1J   C  0  1  Y  N  N  26.555  46.044   -8.818   2.184   0.639   1.407  C1J   5WA  16  
5WA  C1K   C1K   C  0  1  Y  N  N  28.583  44.861   -9.368   2.029   1.020  -0.954  C1K   5WA  17  
5WA  O1N   O1N   O  0  1  N  N  N  25.590  47.564  -10.453   3.853  -0.824   2.263  O1N   5WA  18  
5WA  O1O   O1O   O  0  1  N  N  N  29.614  45.206  -11.526   3.550  -0.062  -2.429  O1O   5WA  19  
5WA  O1P   O1P   O  0  1  N  N  N  27.618  46.993  -12.209   4.771  -1.291  -0.290  O1P   5WA  20  
5WA  C1U   C1U   C  0  1  Y  N  N  27.559  45.140   -8.461   1.575   1.256   0.330  C1U   5WA  21  
5WA  C1V   C1V   C  0  1  Y  N  N  26.568  46.672  -10.073   3.256  -0.217   1.204  C1V   5WA  22  
5WA  C1W   C1W   C  0  1  Y  N  N  28.617  45.482  -10.625   3.104   0.170  -1.166  C1W   5WA  23  
5WA  C1X   C1X   C  0  1  Y  N  N  27.598  46.379  -10.981   3.719  -0.453  -0.086  C1X   5WA  24  
5WA  C1Y   C1Y   C  0  1  N  N  R  27.544  44.444   -7.086   0.414   2.190   0.557  C1Y   5WA  25  
5WA  H1A   H1A   H  0  1  N  N  N  24.064  48.829   -9.800   3.401   0.534   3.753  H1A   5WA  26  
5WA  H1AA  H1AA  H  0  0  N  N  N  24.295  47.333   -8.834   2.278  -0.838   3.600  H1AA  5WA  27  
5WA  H1AB  H1AB  H  0  0  N  N  N  25.473  48.682   -8.696   3.890  -1.083   4.313  H1AB  5WA  28  
5WA  H1B   H1B   H  0  1  N  N  N  31.613  44.662  -11.742   3.319   0.331  -4.444  H1B   5WA  29  
5WA  H1BA  H1BA  H  0  0  N  N  N  31.242  45.701  -10.325   1.816   0.303  -3.491  H1BA  5WA  30  
5WA  H1BB  H1BB  H  0  0  N  N  N  30.771  43.968  -10.316   2.933   1.681  -3.350  H1BB  5WA  31  
5WA  H1C   H1C   H  0  1  N  N  N  26.880  46.856  -14.159   3.836  -2.779  -1.376  H1C   5WA  32  
5WA  H1CA  H1CA  H  0  0  N  N  N  27.198  45.288  -13.341   5.395  -3.228  -0.646  H1CA  5WA  33  
5WA  H1CB  H1CB  H  0  0  N  N  N  25.771  46.274  -12.871   3.948  -3.065   0.377  H1CB  5WA  34  
5WA  H1D   H1D   H  0  1  N  N  N  22.612  41.967   -9.402  -1.479  -1.907  -1.428  H1D   5WA  35  
5WA  H1DA  H1DA  H  0  0  N  N  N  23.617  43.427   -9.112  -1.015  -1.505   0.243  H1DA  5WA  36  
5WA  H1DB  H1DB  H  0  0  N  N  N  24.319  41.791   -8.872  -1.916  -3.002  -0.094  H1DB  5WA  37  
5WA  HN1E  HN1E  H  0  0  N  N  N  19.669  41.131   -6.356  -6.551  -2.855  -0.546  HN1E  5WA  38  
5WA  HN1A  HN1A  H  0  0  N  N  N  20.163  40.654   -4.875  -7.422  -1.456  -0.215  HN1A  5WA  39  
5WA  HN1F  HN1F  H  0  0  N  N  N  23.517  43.266   -3.124  -5.244   2.569   0.695  HN1F  5WA  40  
5WA  HN1B  HN1B  H  0  0  N  N  N  24.873  42.851   -3.933  -3.565   2.641   0.696  HN1B  5WA  41  
5WA  HO1G  HO1G  H  0  0  N  N  N  28.730  45.742   -6.222   0.421   2.962  -1.315  HO1G  5WA  42  
5WA  H1J   H1J   H  0  1  N  N  N  25.760  46.262   -8.120   1.826   0.826   2.409  H1J   5WA  43  
5WA  H1K   H1K   H  0  1  N  N  N  29.358  44.159   -9.099   1.551   1.504  -1.792  H1K   5WA  44  
5WA  H1Y   H1Y   H  0  1  N  N  N  28.285  43.631   -7.103   0.470   2.601   1.565  H1Y   5WA  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5WA  C6   N1    DOUB  Y  N   1  
5WA  N1   C2    SING  Y  N   2  
5WA  C2   N1E   SING  N  N   3  
5WA  C2   N3    DOUB  Y  N   4  
5WA  C4   N3    SING  Y  N   5  
5WA  C5   C4    DOUB  Y  N   6  
5WA  C4   N1F   SING  N  N   7  
5WA  C6   C5    SING  Y  N   8  
5WA  C1H  C5    SING  N  N   9  
5WA  C1D  C6    SING  N  N  10  
5WA  O1N  C1A   SING  N  N  11  
5WA  C1A  H1A   SING  N  N  12  
5WA  C1A  H1AA  SING  N  N  13  
5WA  C1A  H1AB  SING  N  N  14  
5WA  O1O  C1B   SING  N  N  15  
5WA  C1B  H1B   SING  N  N  16  
5WA  C1B  H1BA  SING  N  N  17  
5WA  C1B  H1BB  SING  N  N  18  
5WA  C1C  O1P   SING  N  N  19  
5WA  C1C  H1C   SING  N  N  20  
5WA  C1C  H1CA  SING  N  N  21  
5WA  C1C  H1CB  SING  N  N  22  
5WA  C1D  H1D   SING  N  N  23  
5WA  C1D  H1DA  SING  N  N  24  
5WA  C1D  H1DB  SING  N  N  25  
5WA  N1E  HN1E  SING  N  N  26  
5WA  N1E  HN1A  SING  N  N  27  
5WA  N1F  HN1F  SING  N  N  28  
5WA  N1F  HN1B  SING  N  N  29  
5WA  C1Y  O1G   SING  N  N  30  
5WA  O1G  HO1G  SING  N  N  31  
5WA  C1I  C1H   TRIP  N  N  32  
5WA  C1Y  C1I   SING  N  N  33  
5WA  C1V  C1J   DOUB  Y  N  34  
5WA  C1J  C1U   SING  Y  N  35  
5WA  C1J  H1J   SING  N  N  36  
5WA  C1W  C1K   SING  Y  N  37  
5WA  C1K  C1U   DOUB  Y  N  38  
5WA  C1K  H1K   SING  N  N  39  
5WA  O1N  C1V   SING  N  N  40  
5WA  O1O  C1W   SING  N  N  41  
5WA  O1P  C1X   SING  N  N  42  
5WA  C1U  C1Y   SING  N  N  43  
5WA  C1X  C1V   SING  Y  N  44  
5WA  C1X  C1W   DOUB  Y  N  45  
5WA  C1Y  H1Y   SING  N  N  46  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5WA  SMILES            ACDLabs               11.02  "C(#CC(O)c1cc(OC)c(OC)c(OC)c1)c2c(nc(nc2C)N)N"  
5WA  SMILES_CANONICAL  CACTVS                3.352  "COc1cc(cc(OC)c1OC)[C@@H](O)C#Cc2c(C)nc(N)nc2N"  
5WA  SMILES            CACTVS                3.352  "COc1cc(cc(OC)c1OC)[CH](O)C#Cc2c(C)nc(N)nc2N"  
5WA  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "Cc1c(c(nc(n1)N)N)C#C[C@@H](c2cc(c(c(c2)OC)OC)OC)O"  
5WA  SMILES            "OpenEye OEToolkits"  1.7.0  "Cc1c(c(nc(n1)N)N)C#CC(c2cc(c(c(c2)OC)OC)OC)O"  
5WA  InChI             InChI                 1.03   "InChI=1S/C17H20N4O4/c1-9-11(16(18)21-17(19)20-9)5-6-12(22)10-7-13(23-2)15(25-4)14(8-10)24-3/h7-8,12,22H,1-4H3,(H4,18,19,20,21)/t12-/m0/s1"  
5WA  InChIKey          InChI                 1.03   MRGVCWULZNEIIL-LBPRGKRZSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5WA  "SYSTEMATIC NAME"  ACDLabs               11.02  "(1R)-3-(2,4-diamino-6-methylpyrimidin-5-yl)-1-(3,4,5-trimethoxyphenyl)prop-2-yn-1-ol"  
5WA  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.6.1  "(1R)-3-[2,4-bis(azanyl)-6-methyl-pyrimidin-5-yl]-1-(3,4,5-trimethoxyphenyl)prop-2-yn-1-ol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5WA  "Create component"      2009-09-22  RCSB  
5WA  "Modify aromatic_flag"  2011-06-04  RCSB  
5WA  "Modify descriptor"     2011-06-04  RCSB  
5WA  "Modify synonyms"       2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     5WA
_pdbx_chem_comp_synonyms.name        "(R)-2,4-diamino-5-(3-hydroxy-3-(3,4,5-trimethoxyphenyl)prop-1-ynyl)-6-methylpyrimidine"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
