data_5RA
# 
_chem_comp.id                                    5RA 
_chem_comp.name                                  "5-[(4-methyl-1,4-diazepan-1-yl)methyl]-2-[4-[(4-methyl-1,4-diazepan-1-yl)methyl]phenyl]benzenecarbonitrile" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H37 N5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-11-16 
_chem_comp.pdbx_modified_date                    2015-12-31 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        431.616 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5RA 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5EQY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5RA C1  C1  C 0 1 N N N 33.803 38.306 36.948 -6.920 2.874  2.226  C1  5RA 1  
5RA C51 C2  C 0 1 N N N 44.901 28.671 45.361 4.967  2.133  0.457  C51 5RA 2  
5RA C6  C3  C 0 1 N N N 33.603 36.833 35.550 -6.491 2.592  -0.117 C6  5RA 3  
5RA C8  C4  C 0 1 N N N 34.596 34.449 35.460 -6.750 0.277  -1.165 C8  5RA 4  
5RA C10 C5  C 0 1 N N N 35.817 35.501 37.420 -5.362 -0.130 0.741  C10 5RA 5  
5RA N2  N1  N 0 1 N N N 33.613 36.595 36.979 -6.626 1.918  1.150  N2  5RA 6  
5RA C7  C6  C 0 1 N N N 33.926 35.596 34.691 -7.084 1.779  -1.287 C7  5RA 7  
5RA N9  N2  N 0 1 N N N 35.882 34.816 36.080 -5.396 0.043  -0.730 N9  5RA 8  
5RA C11 C7  C 0 1 N N N 34.910 36.711 37.622 -5.395 1.149  1.446  C11 5RA 9  
5RA C22 C8  C 0 1 N N N 36.892 33.702 35.928 -4.819 -1.124 -1.410 C22 5RA 10 
5RA C23 C9  C 0 1 Y N N 37.752 33.346 37.135 -3.341 -1.194 -1.122 C23 5RA 11 
5RA C26 C10 C 0 1 Y N N 37.187 32.717 38.276 -2.889 -1.897 -0.025 C26 5RA 12 
5RA C27 C11 C 0 1 Y N N 37.973 32.386 39.405 -1.521 -1.964 0.245  C27 5RA 13 
5RA C28 C12 C 0 1 Y N N 39.381 32.653 39.429 -0.613 -1.311 -0.607 C28 5RA 14 
5RA C29 C13 C 0 1 Y N N 39.933 33.283 38.284 -1.089 -0.606 -1.709 C29 5RA 15 
5RA C30 C14 C 0 1 Y N N 39.142 33.619 37.149 -2.445 -0.555 -1.963 C30 5RA 16 
5RA C34 C15 C 0 1 Y N N 40.292 32.332 40.599 0.842  -1.372 -0.333 C34 5RA 17 
5RA C35 C16 C 0 1 Y N N 40.667 30.995 40.906 1.731  -1.729 -1.346 C35 5RA 18 
5RA C36 C17 C 0 1 Y N N 41.519 30.699 42.010 3.085  -1.784 -1.086 C36 5RA 19 
5RA C37 C18 C 0 1 Y N N 42.027 31.738 42.842 3.561  -1.486 0.179  C37 5RA 20 
5RA C38 C19 C 0 1 Y N N 41.648 33.067 42.532 2.684  -1.131 1.188  C38 5RA 21 
5RA C39 C20 C 0 1 Y N N 40.804 33.354 41.440 1.329  -1.067 0.938  C39 5RA 22 
5RA C44 C21 C 0 1 N N N 37.254 31.761 40.493 -1.046 -2.692 1.383  C44 5RA 23 
5RA N45 N3  N 0 1 N N N 36.694 31.276 41.392 -0.670 -3.270 2.286  N45 5RA 24 
5RA C46 C22 C 0 1 N N N 42.945 31.456 44.016 5.041  -1.549 0.457  C46 5RA 25 
5RA N47 N4  N 0 1 N N N 43.934 30.389 43.735 5.646  -0.238 0.187  N47 5RA 26 
5RA C50 C23 C 0 1 N N N 43.757 29.073 44.400 5.164  0.756  1.115  C50 5RA 27 
5RA N52 N5  N 0 1 N N N 46.003 29.662 45.347 6.065  2.485  -0.474 N52 5RA 28 
5RA C53 C24 C 0 1 N N N 46.922 29.616 44.182 7.383  2.151  0.009  C53 5RA 29 
5RA C54 C25 C 0 1 N N N 46.260 29.678 42.794 7.763  0.753  -0.521 C54 5RA 30 
5RA C55 C26 C 0 1 N N N 45.007 30.586 42.704 7.124  -0.313 0.248  C55 5RA 31 
5RA C66 C27 C 0 1 N N N 46.655 29.911 46.641 5.991  3.899  -0.865 C66 5RA 32 
5RA H1  H1  H 0 1 N N N 33.872 38.687 37.978 -7.815 3.443  1.972  H1  5RA 33 
5RA H2  H2  H 0 1 N N N 34.722 38.563 36.400 -7.086 2.333  3.158  H2  5RA 34 
5RA H3  H3  H 0 1 N N N 32.937 38.762 36.446 -6.079 3.556  2.347  H3  5RA 35 
5RA H4  H4  H 0 1 N N N 44.500 28.599 46.383 4.027  2.129  -0.094 H4  5RA 36 
5RA H5  H5  H 0 1 N N N 45.298 27.692 45.053 4.912  2.891  1.238  H5  5RA 37 
5RA H6  H6  H 0 1 N N N 32.602 37.194 35.269 -7.003 3.553  -0.062 H6  5RA 38 
5RA H7  H7  H 0 1 N N N 34.349 37.610 35.326 -5.433 2.769  -0.311 H7  5RA 39 
5RA H8  H8  H 0 1 N N N 33.911 34.118 36.254 -7.434 -0.179 -0.449 H8  5RA 40 
5RA H9  H9  H 0 1 N N N 34.774 33.620 34.759 -6.895 -0.196 -2.137 H9  5RA 41 
5RA H10 H10 H 0 1 N N N 35.498 34.741 38.148 -6.222 -0.725 1.047  H10 5RA 42 
5RA H11 H11 H 0 1 N N N 36.840 35.829 37.657 -4.450 -0.660 1.014  H11 5RA 43 
5RA H13 H13 H 0 1 N N N 32.986 35.220 34.262 -8.166 1.903  -1.294 H13 5RA 44 
5RA H14 H14 H 0 1 N N N 34.601 35.907 33.880 -6.677 2.158  -2.225 H14 5RA 45 
5RA H16 H16 H 0 1 N N N 34.749 36.845 38.702 -5.343 0.963  2.519  H16 5RA 46 
5RA H17 H17 H 0 1 N N N 35.420 37.596 37.214 -4.529 1.740  1.148  H17 5RA 47 
5RA H18 H18 H 0 1 N N N 36.338 32.795 35.642 -5.302 -2.032 -1.049 H18 5RA 48 
5RA H19 H19 H 0 1 N N N 37.574 33.988 35.113 -4.975 -1.032 -2.485 H19 5RA 49 
5RA H20 H20 H 0 1 N N N 36.132 32.486 38.282 -3.593 -2.395 0.625  H20 5RA 50 
5RA H21 H21 H 0 1 N N N 40.988 33.515 38.273 -0.397 -0.101 -2.367 H21 5RA 51 
5RA H22 H22 H 0 1 N N N 39.605 34.086 36.292 -2.809 -0.010 -2.821 H22 5RA 52 
5RA H23 H23 H 0 1 N N N 40.299 30.188 40.290 1.360  -1.963 -2.333 H23 5RA 53 
5RA H24 H24 H 0 1 N N N 41.783 29.673 42.219 3.774  -2.061 -1.870 H24 5RA 54 
5RA H25 H25 H 0 1 N N N 42.013 33.878 43.145 3.062  -0.900 2.173  H25 5RA 55 
5RA H26 H26 H 0 1 N N N 40.539 34.381 41.238 0.646  -0.786 1.725  H26 5RA 56 
5RA H27 H27 H 0 1 N N N 43.488 32.380 44.266 5.203  -1.815 1.502  H27 5RA 57 
5RA H28 H28 H 0 1 N N N 42.331 31.147 44.875 5.500  -2.300 -0.185 H28 5RA 58 
5RA H30 H30 H 0 1 N N N 43.680 28.303 43.619 5.881  0.853  1.930  H30 5RA 59 
5RA H31 H31 H 0 1 N N N 42.821 29.105 44.977 4.210  0.422  1.525  H31 5RA 60 
5RA H33 H33 H 0 1 N N N 47.611 30.469 44.264 8.102  2.887  -0.352 H33 5RA 61 
5RA H34 H34 H 0 1 N N N 47.492 28.677 44.241 7.381  2.142  1.099  H34 5RA 62 
5RA H35 H35 H 0 1 N N N 47.005 30.053 42.077 7.455  0.673  -1.563 H35 5RA 63 
5RA H36 H36 H 0 1 N N N 45.962 28.657 42.512 8.845  0.633  -0.462 H36 5RA 64 
5RA H37 H37 H 0 1 N N N 44.550 30.421 41.717 7.439  -0.236 1.289  H37 5RA 65 
5RA H38 H38 H 0 1 N N N 45.349 31.629 42.780 7.446  -1.276 -0.147 H38 5RA 66 
5RA H39 H39 H 0 1 N N N 47.452 30.658 46.513 6.071  4.526  0.023  H39 5RA 67 
5RA H40 H40 H 0 1 N N N 45.912 30.287 47.359 6.808  4.131  -1.549 H40 5RA 68 
5RA H41 H41 H 0 1 N N N 47.089 28.974 47.019 5.038  4.090  -1.360 H41 5RA 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5RA C51 C50 SING N N 1  
5RA C51 N52 SING N N 2  
5RA C6  N2  SING N N 3  
5RA C6  C7  SING N N 4  
5RA C8  C7  SING N N 5  
5RA C8  N9  SING N N 6  
5RA C10 N9  SING N N 7  
5RA C10 C11 SING N N 8  
5RA N2  C11 SING N N 9  
5RA N9  C22 SING N N 10 
5RA C22 C23 SING N N 11 
5RA C23 C26 DOUB Y N 12 
5RA C23 C30 SING Y N 13 
5RA C26 C27 SING Y N 14 
5RA C27 C28 DOUB Y N 15 
5RA C27 C44 SING N N 16 
5RA C28 C29 SING Y N 17 
5RA C28 C34 SING N N 18 
5RA C29 C30 DOUB Y N 19 
5RA C34 C35 DOUB Y N 20 
5RA C34 C39 SING Y N 21 
5RA C35 C36 SING Y N 22 
5RA C36 C37 DOUB Y N 23 
5RA C37 C38 SING Y N 24 
5RA C37 C46 SING N N 25 
5RA C38 C39 DOUB Y N 26 
5RA C44 N45 TRIP N N 27 
5RA C46 N47 SING N N 28 
5RA N47 C50 SING N N 29 
5RA N47 C55 SING N N 30 
5RA N52 C53 SING N N 31 
5RA N52 C66 SING N N 32 
5RA C53 C54 SING N N 33 
5RA C54 C55 SING N N 34 
5RA N2  C1  SING N N 35 
5RA C1  H1  SING N N 36 
5RA C1  H2  SING N N 37 
5RA C1  H3  SING N N 38 
5RA C51 H4  SING N N 39 
5RA C51 H5  SING N N 40 
5RA C6  H6  SING N N 41 
5RA C6  H7  SING N N 42 
5RA C8  H8  SING N N 43 
5RA C8  H9  SING N N 44 
5RA C10 H10 SING N N 45 
5RA C10 H11 SING N N 46 
5RA C7  H13 SING N N 47 
5RA C7  H14 SING N N 48 
5RA C11 H16 SING N N 49 
5RA C11 H17 SING N N 50 
5RA C22 H18 SING N N 51 
5RA C22 H19 SING N N 52 
5RA C26 H20 SING N N 53 
5RA C29 H21 SING N N 54 
5RA C30 H22 SING N N 55 
5RA C35 H23 SING N N 56 
5RA C36 H24 SING N N 57 
5RA C38 H25 SING N N 58 
5RA C39 H26 SING N N 59 
5RA C46 H27 SING N N 60 
5RA C46 H28 SING N N 61 
5RA C50 H30 SING N N 62 
5RA C50 H31 SING N N 63 
5RA C53 H33 SING N N 64 
5RA C53 H34 SING N N 65 
5RA C54 H35 SING N N 66 
5RA C54 H36 SING N N 67 
5RA C55 H37 SING N N 68 
5RA C55 H38 SING N N 69 
5RA C66 H39 SING N N 70 
5RA C66 H40 SING N N 71 
5RA C66 H41 SING N N 72 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5RA InChI            InChI                1.03  "InChI=1S/C27H37N5/c1-29-11-3-13-31(17-15-29)21-23-5-8-25(9-6-23)27-10-7-24(19-26(27)20-28)22-32-14-4-12-30(2)16-18-32/h5-10,19H,3-4,11-18,21-22H2,1-2H3" 
5RA InChIKey         InChI                1.03  MJTWJYMXCDQAOT-UHFFFAOYSA-N                                                                                                                               
5RA SMILES_CANONICAL CACTVS               3.385 "CN1CCCN(CC1)Cc2ccc(cc2)c3ccc(CN4CCCN(C)CC4)cc3C#N"                                                                                                       
5RA SMILES           CACTVS               3.385 "CN1CCCN(CC1)Cc2ccc(cc2)c3ccc(CN4CCCN(C)CC4)cc3C#N"                                                                                                       
5RA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "CN1CCCN(CC1)Cc2ccc(cc2)c3ccc(cc3C#N)CN4CCCN(CC4)C"                                                                                                       
5RA SMILES           "OpenEye OEToolkits" 2.0.4 "CN1CCCN(CC1)Cc2ccc(cc2)c3ccc(cc3C#N)CN4CCCN(CC4)C"                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5RA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "5-[(4-methyl-1,4-diazepan-1-yl)methyl]-2-[4-[(4-methyl-1,4-diazepan-1-yl)methyl]phenyl]benzenecarbonitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5RA "Create component" 2015-11-16 RCSB 
5RA "Initial release"  2016-01-05 RCSB 
# 
