data_5AA
#

_chem_comp.id                                   5AA
_chem_comp.name                                 "N6-DIMETHYL-3'-AMINO-ADENOSINE-5'-MONOPHOSPHATE"
_chem_comp.type                                 "RNA LINKING"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C12 H19 N6 O6 P"
_chem_comp.mon_nstd_parent_comp_id              DA
_chem_comp.pdbx_synonyms                        "PUROMYCIN AMINONUCLEOSIDE-5'-MONOPHOSPHATE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2004-12-29
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       374.290
_chem_comp.one_letter_code                      A
_chem_comp.three_letter_code                    5AA
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1VQ7
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5AA  P       P     P  0  1  N  N  N  73.542  116.104  106.620   6.420  -2.698  -1.384  P       5AA   1  
5AA  OP3     O3P   O  0  1  N  Y  N  72.424  115.131  106.499   5.930  -2.624  -2.923  OP3     5AA   2  
5AA  OP2     O2P   O  0  1  N  N  N  74.943  115.622  106.526   6.083  -4.222  -0.959  OP2     5AA   3  
5AA  "O5'"   O5*   O  0  1  N  N  N  73.323  117.245  105.531   5.302  -1.845  -0.583  "O5'"   5AA   4  
5AA  "C5'"   C5*   C  0  1  N  N  N  72.069  117.946  105.466   3.936  -2.187  -0.760  "C5'"   5AA   5  
5AA  "C4'"   C4*   C  0  1  N  N  S  72.293  119.418  105.231   3.084  -1.257   0.084  "C4'"   5AA   6  
5AA  "O4'"   O4*   O  0  1  N  N  N  73.112  119.955  106.298   3.266   0.101  -0.358  "O4'"   5AA   7  
5AA  "C1'"   C1*   C  0  1  N  N  R  73.981  120.950  105.784   2.048   0.830  -0.103  "C1'"   5AA   8  
5AA  N9      N9    N  0  1  Y  N  N  75.363  120.515  106.004   1.642   1.539  -1.318  N9      5AA   9  
5AA  C4      C4    C  0  1  Y  N  N  76.382  121.258  106.553   1.019   2.752  -1.389  C4      5AA  10  
5AA  N3      N3    N  0  1  Y  N  N  76.319  122.525  107.002   0.649   3.543  -0.371  N3      5AA  11  
5AA  C2      C2    C  0  1  Y  N  N  77.503  122.919  107.468   0.058   4.665  -0.836  C2      5AA  12  
5AA  N1      N1    N  0  1  Y  N  N  78.656  122.246  107.528  -0.176   5.034  -2.118  N1      5AA  13  
5AA  C6      C6    C  0  1  Y  N  N  78.695  120.977  107.063   0.225   4.186  -3.096  C6      5AA  14  
5AA  N6      N6    N  0  1  N  N  N  79.871  120.314  107.109   0.011   4.512  -4.446  N6      5AA  15  
5AA  C5      C5    C  0  1  Y  N  N  77.493  120.437  106.551   0.848   2.993  -2.743  C5      5AA  16  
5AA  N7      N7    N  0  1  Y  N  N  77.181  119.194  106.018   1.352   1.957  -3.488  N7      5AA  17  
5AA  C8      C8    C  0  1  Y  N  N  75.912  119.294  105.707   1.821   1.102  -2.604  C8      5AA  18  
5AA  C9      C9    C  0  1  N  N  N  80.098  118.955  106.633   0.437   3.609  -5.501  C9      5AA  19  
5AA  C10     C10   C  0  1  N  N  N  81.076  120.929  107.644  -0.652   5.751  -4.811  C10     5AA  20  
5AA  "C2'"   C2*   C  0  1  N  N  R  73.644  121.132  104.304   1.004  -0.169   0.402  "C2'"   5AA  21  
5AA  "O2'"   O2*   O  0  1  N  N  N  72.694  122.169  104.162   0.908  -0.058   1.821  "O2'"   5AA  22  
5AA  "C3'"   C3*   C  0  1  N  N  S  73.045  119.776  103.962   1.585  -1.511  -0.024  "C3'"   5AA  23  
5AA  "N3'"   N3*   N  0  1  N  N  N  72.188  119.852  102.836   1.125  -2.643   0.762  "N3'"   5AA  24  
5AA  OP1     O1P   O  0  1  N  N  N       ?        ?        ?   7.838  -2.271  -1.140  OP1     5AA  25  
5AA  HOP3    3HOP  H  0  0  N  N  N  71.528  115.439  106.559   6.496  -3.019  -3.620  HOP3    5AA  26  
5AA  HOP2    2HOP  H  0  0  N  N  N  75.657  116.244  106.603   6.687  -4.939  -1.247  HOP2    5AA  27  
5AA  "H5'"   1H5*  H  0  1  N  N  N  71.446  117.762  106.372   3.679  -2.084  -1.817  "H5'"   5AA  28  
5AA  "H5''"  2H5*  H  0  0  N  N  N  71.388  117.504  104.702   3.787  -3.225  -0.451  "H5''"  5AA  29  
5AA  "H4'"   H4*   H  0  1  N  N  N  71.261  119.836  105.167   3.424  -1.305   1.126  "H4'"   5AA  30  
5AA  "H1'"   H1*   H  0  1  N  N  N  73.858  121.934  106.294   2.264   1.616   0.627  "H1'"   5AA  31  
5AA  H2      H2    H  0  1  N  N  N  77.533  123.950  107.860  -0.275   5.368  -0.079  H2      5AA  32  
5AA  H8      H8    H  0  1  N  N  N  75.370  118.450  105.249   2.297   0.157  -2.832  H8      5AA  33  
5AA  H91     1H9   H  0  1  N  N  N  79.762  118.931  105.570  -0.188   2.713  -5.503  H91     5AA  34  
5AA  H92     2H9   H  0  1  N  N  N  81.069  118.408  106.671   1.478   3.312  -5.346  H92     5AA  35  
5AA  H93     3H9   H  0  1  N  N  N  79.349  118.309  107.148   0.354   4.100  -6.474  H93     5AA  36  
5AA  H101    1H10  H  0  0  N  N  N  80.847  121.290  108.674  -1.703   5.717  -4.511  H101    5AA  37  
5AA  H102    2H10  H  0  0  N  N  N  82.047  120.382  107.682  -0.599   5.904  -5.892  H102    5AA  38  
5AA  H103    3H10  H  0  0  N  N  N  81.244  121.885  107.095  -0.171   6.597  -4.313  H103    5AA  39  
5AA  "H2'"   H2*   H  0  1  N  N  N  74.503  121.413  103.651   0.001   0.002  -0.002  "H2'"   5AA  40  
5AA  H1      H1    H  0  1  N  N  N  72.485  122.282  103.242   0.894   0.890   2.022  H1      5AA  41  
5AA  "H3'"   H3*   H  0  1  N  N  N  73.806  119.013  103.675   1.326  -1.679  -1.077  "H3'"   5AA  42  
5AA  "H3'1"  1H3*  H  0  0  N  N  N  71.416  120.498  103.002   0.140  -2.791   0.854  "H3'1"  5AA  43  
5AA  "H3'2"  2H3*  H  0  0  N  N  N  72.693  120.093  101.983   1.785  -3.115   1.348  "H3'2"  5AA  44  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5AA  P      OP3     SING  N  N   1  
5AA  P      OP2     SING  N  N   2  
5AA  P      "O5'"   SING  N  N   3  
5AA  P      OP1     DOUB  N  N   4  
5AA  OP3    HOP3    SING  N  N   5  
5AA  OP2    HOP2    SING  N  N   6  
5AA  "O5'"  "C5'"   SING  N  N   7  
5AA  "C5'"  "C4'"   SING  N  N   8  
5AA  "C5'"  "H5'"   SING  N  N   9  
5AA  "C5'"  "H5''"  SING  N  N  10  
5AA  "C4'"  "O4'"   SING  N  N  11  
5AA  "C4'"  "C3'"   SING  N  N  12  
5AA  "C4'"  "H4'"   SING  N  N  13  
5AA  "O4'"  "C1'"   SING  N  N  14  
5AA  "C1'"  N9      SING  N  N  15  
5AA  "C1'"  "C2'"   SING  N  N  16  
5AA  "C1'"  "H1'"   SING  N  N  17  
5AA  N9     C4      SING  Y  N  18  
5AA  N9     C8      SING  Y  N  19  
5AA  C4     N3      SING  Y  N  20  
5AA  C4     C5      DOUB  Y  N  21  
5AA  N3     C2      DOUB  Y  N  22  
5AA  C2     N1      SING  Y  N  23  
5AA  C2     H2      SING  N  N  24  
5AA  N1     C6      DOUB  Y  N  25  
5AA  C6     N6      SING  N  N  26  
5AA  C6     C5      SING  Y  N  27  
5AA  N6     C9      SING  N  N  28  
5AA  N6     C10     SING  N  N  29  
5AA  C5     N7      SING  Y  N  30  
5AA  N7     C8      DOUB  Y  N  31  
5AA  C8     H8      SING  N  N  32  
5AA  C9     H91     SING  N  N  33  
5AA  C9     H92     SING  N  N  34  
5AA  C9     H93     SING  N  N  35  
5AA  C10    H101    SING  N  N  36  
5AA  C10    H102    SING  N  N  37  
5AA  C10    H103    SING  N  N  38  
5AA  "C2'"  "O2'"   SING  N  N  39  
5AA  "C2'"  "C3'"   SING  N  N  40  
5AA  "C2'"  "H2'"   SING  N  N  41  
5AA  "O2'"  H1      SING  N  N  42  
5AA  "C3'"  "N3'"   SING  N  N  43  
5AA  "C3'"  "H3'"   SING  N  N  44  
5AA  "N3'"  "H3'1"  SING  N  N  45  
5AA  "N3'"  "H3'2"  SING  N  N  46  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5AA  SMILES            ACDLabs               10.04  "O=P(O)(O)OCC3OC(n2cnc1c2ncnc1N(C)C)C(O)C3N"  
5AA  SMILES_CANONICAL  CACTVS                3.341  "CN(C)c1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](N)[C@H]3O"  
5AA  SMILES            CACTVS                3.341  "CN(C)c1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH](N)[CH]3O"  
5AA  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CN(C)c1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)N)O"  
5AA  SMILES            "OpenEye OEToolkits"  1.5.0  "CN(C)c1c2c(ncn1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)N)O"  
5AA  InChI             InChI                 1.03   "InChI=1S/C12H19N6O6P/c1-17(2)10-8-11(15-4-14-10)18(5-16-8)12-9(19)7(13)6(24-12)3-23-25(20,21)22/h4-7,9,12,19H,3,13H2,1-2H3,(H2,20,21,22)/t6-,7-,9-,12-/m1/s1"  
5AA  InChIKey          InChI                 1.03   BFPIKGKMRKBBBF-GRIPGOBMSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5AA  "SYSTEMATIC NAME"  ACDLabs               10.04  "3'-amino-3'-deoxy-N,N-dimethyladenosine 5'-(dihydrogen phosphate)"  
5AA  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2S,3S,4R,5R)-3-amino-5-(6-dimethylaminopurin-9-yl)-4-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5AA  "Create component"     2004-12-29  RCSB  
5AA  "Modify linking type"  2011-06-04  RCSB  
5AA  "Modify descriptor"    2011-06-04  RCSB  
5AA  "Modify synonyms"      2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     5AA
_pdbx_chem_comp_synonyms.name        "PUROMYCIN AMINONUCLEOSIDE-5'-MONOPHOSPHATE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
