data_58A
# 
_chem_comp.id                                    58A 
_chem_comp.name                                  "5'-O-[(R)-{[(S)-{(2R)-2,3-bis[(9E)-octadec-9-enoyloxy]propoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]cytidine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C48 H85 N3 O15 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "cytidinediphosphate-dioleoylglycerol; CDP-1,2-dioleoyl-sn-glycerol" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-08-19 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        1006.147 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     58A 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5D92 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
58A OAA   O1  O 0 1 N N N N N N 0.999   -19.094 -60.222 -6.012  4.937  0.103  OAA   58A 1   
58A CAB   C1  C 0 1 N N N N N N -0.113  -18.862 -59.886 -6.484  4.286  -0.815 CAB   58A 2   
58A NAC   N1  N 0 1 N N N N N N -0.912  -19.886 -59.638 -7.778  3.970  -0.797 NAC   58A 3   
58A CAD   C2  C 0 1 N N N N N N -2.165  -19.691 -59.264 -8.316  3.263  -1.781 CAD   58A 4   
58A NAE   N2  N 0 1 N N N N N N -3.041  -20.813 -58.991 -9.654  2.943  -1.752 NAE   58A 5   
58A CAF   C3  C 0 1 N N N N N N -2.616  -18.381 -59.140 -7.510  2.840  -2.858 CAF   58A 6   
58A CAG   C4  C 0 1 N N N N N N -1.745  -17.332 -59.411 -6.196  3.169  -2.862 CAG   58A 7   
58A NAH   N3  N 0 1 N N N N N N -0.502  -17.601 -59.785 -5.690  3.902  -1.831 NAH   58A 8   
58A "C1'" C5  C 0 1 N N R N N N 0.403   -16.546 -60.059 -4.272  4.270  -1.826 "C1'" 58A 9   
58A "O4'" O2  O 0 1 N N N N N N -0.190  -15.108 -59.509 -3.649  3.856  -0.590 "O4'" 58A 10  
58A "C2'" C6  C 0 1 N N R N N N 0.596   -16.380 -61.370 -4.114  5.806  -1.852 "C2'" 58A 11  
58A "O2'" O3  O 0 1 N N N N N N 1.879   -17.014 -61.768 -3.858  6.261  -3.182 "O2'" 58A 12  
58A "C3'" C7  C 0 1 N N S N N N 0.677   -14.845 -61.592 -2.896  6.075  -0.941 "C3'" 58A 13  
58A "O3'" O4  O 0 1 N N N N N N 1.856   -14.512 -62.114 -1.847  6.703  -1.680 "O3'" 58A 14  
58A "C4'" C8  C 0 1 N N R N N N 0.524   -14.222 -60.142 -2.461  4.668  -0.472 "C4'" 58A 15  
58A "C5'" C9  C 0 1 N N N N N N -0.207  -12.867 -60.199 -1.989  4.714  0.983  "C5'" 58A 16  
58A "O5'" O5  O 0 1 N N N N N N -1.526  -13.059 -59.723 -1.483  3.432  1.360  "O5'" 58A 17  
58A PAR   P1  P 0 1 N N N N N N -2.095  -12.045 -58.534 -0.900  3.116  2.827  PAR   58A 18  
58A OAT   O6  O 0 1 N N N N N N -3.133  -12.790 -57.715 0.172   4.083  3.150  OAT   58A 19  
58A OAS   O7  O 0 1 N N N N N N -0.957  -11.579 -57.655 -2.082  3.243  3.913  OAS   58A 20  
58A OAU   O8  O 0 1 N N N N N N -2.802  -10.729 -59.244 -0.302  1.621  2.857  OAU   58A 21  
58A PAV   P2  P 0 1 N N N N N N -4.442  -10.677 -59.389 0.664   0.823  3.868  PAV   58A 22  
58A OAX   O9  O 0 1 N N N N N N -4.843  -10.337 -60.805 1.742   1.723  4.333  OAX   58A 23  
58A OAW   O10 O 0 1 N N N N N N -4.934  -12.063 -59.048 -0.190  0.309  5.132  OAW   58A 24  
58A OAY   O11 O 0 1 N N N N N N -5.059  -9.551  -58.320 1.310   -0.440 3.107  OAY   58A 25  
58A CAZ   C10 C 0 1 N N N N N N -5.564  -8.341  -58.848 2.293   -1.289 3.704  CAZ   58A 26  
58A CBA   C11 C 0 1 N N R N N N -6.322  -7.554  -57.765 2.689   -2.385 2.714  CBA   58A 27  
58A OBB   O12 O 0 1 N N N N N N -5.510  -7.323  -56.650 3.345   -1.786 1.565  OBB   58A 28  
58A CBU   C12 C 0 1 N N N N N N -5.790  -6.094  -55.994 4.678   -1.645 1.629  CBU   58A 29  
58A OCK   O13 O 0 1 N N N N N N -5.677  -5.065  -56.587 5.278   -2.011 2.613  OCK   58A 30  
58A CBV   C13 C 0 1 N N N N N N -6.252  -6.084  -54.505 5.428   -1.031 0.475  CBV   58A 31  
58A CBW   C14 C 0 1 N N N N N N -7.163  -4.856  -54.157 6.922   -0.988 0.802  CBW   58A 32  
58A CBX   C15 C 0 1 N N N N N N -7.394  -4.699  -52.612 7.683   -0.365 -0.370 CBX   58A 33  
58A CBY   C16 C 0 1 N N N N N N -8.885  -4.861  -52.195 9.177   -0.322 -0.043 CBY   58A 34  
58A CBZ   C17 C 0 1 N N N N N N -9.045  -4.969  -50.647 9.938   0.301  -1.215 CBZ   58A 35  
58A CCA   C18 C 0 1 N N N N N N -10.164 -4.048  -50.070 11.432  0.344  -0.888 CCA   58A 36  
58A CCB   C19 C 0 1 N N N N N N -10.453 -4.362  -48.572 12.193  0.967  -2.060 CCB   58A 37  
58A CCC   C20 C 0 1 N N N N N N -11.567 -3.457  -47.963 13.664  1.010  -1.737 CCC   58A 38  
58A CCD   C21 C 0 1 N N N N N N -12.411 -4.205  -46.889 14.530  0.461  -2.553 CCD   58A 39  
58A CCE   C22 C 0 1 N N N N N N -13.943 -4.065  -47.127 16.001  0.503  -2.231 CCE   58A 40  
58A CCF   C23 C 0 1 N N N N N N -14.770 -4.987  -46.188 16.565  -0.919 -2.236 CCF   58A 41  
58A CCG   C24 C 0 1 N N N N N N -16.174 -4.404  -45.868 18.059  -0.876 -1.909 CCG   58A 42  
58A CCH   C25 C 0 1 N N N N N N -16.800 -5.033  -44.590 18.624  -2.298 -1.913 CCH   58A 43  
58A CCI   C26 C 0 1 N N N N N N -17.689 -4.032  -43.809 20.118  -2.255 -1.586 CCI   58A 44  
58A CCJ   C27 C 0 1 N N N N N N -18.864 -4.729  -43.092 20.682  -3.677 -1.590 CCJ   58A 45  
58A CBC   C28 C 0 1 N N N N N N -7.595  -8.317  -57.324 1.437   -3.133 2.253  CBC   58A 46  
58A OBD   O14 O 0 1 N N N N N N -8.469  -7.374  -56.732 0.478   -2.186 1.714  OBD   58A 47  
58A CBE   C29 C 0 1 N N N N N N -9.524  -7.935  -55.953 -0.684  -2.684 1.263  CBE   58A 48  
58A OCL   O15 O 0 1 N N N N N N -9.845  -9.070  -56.107 -0.892  -3.873 1.316  OCL   58A 49  
58A CBF   C30 C 0 1 N N N N N N -10.243 -7.058  -54.907 -1.728  -1.761 0.689  CBF   58A 50  
58A CBG   C31 C 0 1 N N N N N N -11.749 -7.388  -54.764 -2.946  -2.578 0.252  CBG   58A 51  
58A CBH   C32 C 0 1 N N N N N N -12.546 -6.234  -54.066 -4.006  -1.641 -0.330 CBH   58A 52  
58A CBI   C33 C 0 1 N N N N N N -13.399 -6.742  -52.843 -5.224  -2.457 -0.767 CBI   58A 53  
58A CBJ   C34 C 0 1 N N N N N N -13.875 -5.583  -51.891 -6.284  -1.520 -1.349 CBJ   58A 54  
58A CBK   C35 C 0 1 N N N N N N -15.431 -5.401  -51.917 -7.502  -2.336 -1.787 CBK   58A 55  
58A CBL   C36 C 0 1 N N N N N N -16.005 -4.953  -50.552 -8.562  -1.399 -2.369 CBL   58A 56  
58A CBM   C37 C 0 1 N N N N N N -17.509 -5.302  -50.410 -9.761  -2.203 -2.799 CBM   58A 57  
58A CBN   C38 C 0 1 N N N N N N -18.005 -5.228  -48.944 -10.950 -1.904 -2.338 CBN   58A 58  
58A CBO   C39 C 0 1 N N N N N N -19.538 -5.493  -48.831 -12.150 -2.708 -2.769 CBO   58A 59  
58A CBP   C40 C 0 1 N N N N N N -20.068 -5.383  -47.360 -12.876 -3.243 -1.533 CBP   58A 60  
58A CBQ   C41 C 0 1 N N N N N N -21.546 -4.877  -47.305 -14.094 -4.060 -1.970 CBQ   58A 61  
58A CBR   C42 C 0 1 N N N N N N -21.692 -3.554  -46.505 -14.819 -4.595 -0.734 CBR   58A 62  
58A CBS   C43 C 0 1 N N N N N N -22.897 -3.584  -45.545 -16.037 -5.411 -1.171 CBS   58A 63  
58A CBT   C44 C 0 1 N N N N N N -22.488 -3.459  -44.072 -16.763 -5.946 0.065  CBT   58A 64  
58A H1    H1  H 0 1 N N N N N N -2.700  -21.748 -59.085 -10.206 3.235  -1.010 H1    58A 65  
58A H2    H2  H 0 1 N N N N N N -3.987  -20.652 -58.709 -10.045 2.425  -2.473 H2    58A 66  
58A H3    H3  H 0 1 N N N N N N -3.633  -18.181 -58.836 -7.933  2.263  -3.667 H3    58A 67  
58A H4    H4  H 0 1 N N N N N N -2.077  -16.309 -59.318 -5.558  2.857  -3.675 H4    58A 68  
58A H5    H5  H 0 1 N N N N N N 1.354   -16.723 -59.536 -3.761  3.820  -2.677 H5    58A 69  
58A H6    H6  H 0 1 N N N N N N -0.230  -16.789 -61.971 -5.005  6.288  -1.450 H6    58A 70  
58A H7    H7  H 0 1 N N N N N N 1.945   -17.874 -61.370 -3.751  7.219  -3.257 H7    58A 71  
58A H8    H8  H 0 1 N N N N N N -0.171  -14.520 -62.213 -3.184  6.689  -0.088 H8    58A 72  
58A H9    H9  H 0 1 N N N N N N 1.891   -13.572 -62.244 -2.086  7.564  -2.049 H9    58A 73  
58A H10   H10 H 0 1 N N N N N N 1.525   -14.081 -59.708 -1.671  4.281  -1.116 H10   58A 74  
58A H11   H11 H 0 1 N N N N N N 0.315   -12.135 -59.566 -1.201  5.460  1.086  H11   58A 75  
58A H12   H12 H 0 1 N N N N N N -0.234  -12.501 -61.236 -2.827  4.978  1.628  H12   58A 76  
58A H13   H13 H 0 1 N N N N N N -1.119  -11.847 -56.758 -2.821  2.637  3.763  H13   58A 77  
58A H14   H14 H 0 1 N N N N N N -4.296  -12.499 -58.496 -0.916  -0.286 4.901  H14   58A 78  
58A H15   H15 H 0 1 N N N N N N -4.727  -7.731  -59.219 3.172   -0.699 3.964  H15   58A 79  
58A H16   H16 H 0 1 N N N N N N -6.250  -8.567  -59.678 1.881   -1.744 4.605  H16   58A 80  
58A H17   H17 H 0 1 N N N N N N -6.638  -6.595  -58.201 3.372   -3.083 3.198  H17   58A 81  
58A H18   H18 H 0 1 N N N N N N -6.816  -7.007  -54.306 5.269   -1.631 -0.421 H18   58A 82  
58A H19   H19 H 0 1 N N N N N N -5.361  -6.053  -53.861 5.064   -0.018 0.303  H19   58A 83  
58A H20   H20 H 0 1 N N N N N N -6.683  -3.942  -54.537 7.081   -0.389 1.698  H20   58A 84  
58A H21   H21 H 0 1 N N N N N N -8.138  -4.990  -54.648 7.286   -2.001 0.974  H21   58A 85  
58A H22   H22 H 0 1 N N N N N N -6.800  -5.464  -52.090 7.524   -0.965 -1.266 H22   58A 86  
58A H23   H23 H 0 1 N N N N N N -7.053  -3.699  -52.307 7.319   0.648  -0.542 H23   58A 87  
58A H24   H24 H 0 1 N N N N N N -9.451  -3.988  -52.551 9.335   0.278  0.854  H24   58A 88  
58A H25   H25 H 0 1 N N N N N N -9.287  -5.774  -52.659 9.541   -1.335 0.129  H25   58A 89  
58A H26   H26 H 0 1 N N N N N N -9.288  -6.012  -50.394 9.779   -0.299 -2.111 H26   58A 90  
58A H27   H27 H 0 1 N N N N N N -8.089  -4.691  -50.178 9.574   1.314  -1.387 H27   58A 91  
58A H28   H28 H 0 1 N N N N N N -9.844  -2.999  -50.159 11.590  0.944  0.009  H28   58A 92  
58A H29   H29 H 0 1 N N N N N N -11.086 -4.201  -50.650 11.795  -0.669 -0.716 H29   58A 93  
58A H30   H30 H 0 1 N N N N N N -10.770 -5.412  -48.489 12.034  0.367  -2.956 H30   58A 94  
58A H31   H31 H 0 1 N N N N N N -9.527  -4.212  -47.998 11.829  1.980  -2.231 H31   58A 95  
58A H32   H32 H 0 1 N N N N N N -11.734 -2.430  -48.253 14.006  1.493  -0.834 H32   58A 96  
58A H34   H34 H 0 1 N N N N N N -11.980 -4.760  -46.069 14.188  -0.022 -3.457 H34   58A 97  
58A H36   H36 H 0 1 N N N N N N -14.236 -3.020  -46.945 16.520  1.102  -2.980 H36   58A 98  
58A H37   H37 H 0 1 N N N N N N -14.165 -4.332  -48.171 16.145  0.948  -1.247 H37   58A 99  
58A H38   H38 H 0 1 N N N N N N -14.897 -5.965  -46.676 16.047  -1.518 -1.487 H38   58A 100 
58A H39   H39 H 0 1 N N N N N N -14.218 -5.116  -45.245 16.422  -1.364 -3.220 H39   58A 101 
58A H40   H40 H 0 1 N N N N N N -16.080 -3.318  -45.718 18.578  -0.277 -2.657 H40   58A 102 
58A H41   H41 H 0 1 N N N N N N -16.841 -4.600  -46.721 18.203  -0.431 -0.924 H41   58A 103 
58A H42   H42 H 0 1 N N N N N N -17.416 -5.895  -44.887 18.105  -2.897 -1.165 H42   58A 104 
58A H43   H43 H 0 1 N N N N N N -15.988 -5.373  -43.930 18.480  -2.743 -2.898 H43   58A 105 
58A H44   H44 H 0 1 N N N N N N -17.070 -3.520  -43.058 20.636  -1.656 -2.334 H44   58A 106 
58A H45   H45 H 0 1 N N N N N N -18.094 -3.293  -44.516 20.261  -1.811 -0.601 H45   58A 107 
58A H46   H46 H 0 1 N N N N N N -19.818 -4.194  -43.207 20.163  -4.277 -0.842 H46   58A 108 
58A H47   H47 H 0 1 N N N N N N -18.993 -5.779  -43.394 20.538  -4.122 -2.575 H47   58A 109 
58A H49   H49 H 0 1 N N N N N N -8.077  -8.780  -58.197 1.707   -3.855 1.482  H49   58A 110 
58A H50   H50 H 0 1 N N N N N N -7.332  -9.097  -56.594 0.994   -3.657 3.100  H50   58A 111 
58A H51   H51 H 0 1 N N N N N N -9.758  -7.209  -53.931 -2.029  -1.038 1.447  H51   58A 112 
58A H52   H52 H 0 1 N N N N N N -10.143 -6.004  -55.207 -1.315  -1.236 -0.172 H52   58A 113 
58A H53   H53 H 0 1 N N N N N N -12.172 -7.554  -55.766 -2.645  -3.301 -0.506 H53   58A 114 
58A H54   H54 H 0 1 N N N N N N -11.855 -8.304  -54.165 -3.359  -3.103 1.113  H54   58A 115 
58A H55   H55 H 0 1 N N N N N N -11.831 -5.479  -53.708 -4.307  -0.917 0.428  H55   58A 116 
58A H56   H56 H 0 1 N N N N N N -13.223 -5.778  -54.803 -3.593  -1.115 -1.191 H56   58A 117 
58A H57   H57 H 0 1 N N N N N N -14.287 -7.263  -53.229 -4.923  -3.181 -1.525 H57   58A 118 
58A H58   H58 H 0 1 N N N N N N -12.787 -7.445  -52.258 -5.637  -2.983 0.094  H58   58A 119 
58A H59   H59 H 0 1 N N N N N N -13.562 -5.818  -50.863 -6.585  -0.796 -0.592 H59   58A 120 
58A H60   H60 H 0 1 N N N N N N -13.402 -4.643  -52.213 -5.871  -0.994 -2.210 H60   58A 121 
58A H61   H61 H 0 1 N N N N N N -15.683 -4.641  -52.671 -7.201  -3.060 -2.544 H61   58A 122 
58A H62   H62 H 0 1 N N N N N N -15.892 -6.360  -52.195 -7.915  -2.862 -0.926 H62   58A 123 
58A H63   H63 H 0 1 N N N N N N -15.446 -5.457  -49.750 -8.863  -0.676 -1.611 H63   58A 124 
58A H64   H64 H 0 1 N N N N N N -15.883 -3.864  -50.456 -8.149  -0.873 -3.230 H64   58A 125 
58A H65   H65 H 0 1 N N N N N N -18.143 -5.568  -51.243 -9.641  -3.027 -3.488 H65   58A 126 
58A H67   H67 H 0 1 N N N N N N -17.365 -5.018  -48.100 -11.071 -1.081 -1.650 H67   58A 127 
58A H69   H69 H 0 1 N N N N N N -20.069 -4.756  -49.452 -12.827 -2.074 -3.341 H69   58A 128 
58A H70   H70 H 0 1 N N N N N N -19.748 -6.506  -49.205 -11.824 -3.543 -3.389 H70   58A 129 
58A H71   H71 H 0 1 N N N N N N -20.015 -6.375  -46.888 -12.199 -3.878 -0.961 H71   58A 130 
58A H72   H72 H 0 1 N N N N N N -19.431 -4.679  -46.805 -13.202 -2.408 -0.913 H72   58A 131 
58A H73   H73 H 0 1 N N N N N N -21.900 -4.709  -48.333 -14.770 -3.425 -2.542 H73   58A 132 
58A H74   H74 H 0 1 N N N N N N -22.166 -5.649  -46.826 -13.767 -4.895 -2.590 H74   58A 133 
58A H75   H75 H 0 1 N N N N N N -20.776 -3.392  -45.918 -14.143 -5.230 -0.162 H75   58A 134 
58A H76   H76 H 0 1 N N N N N N -21.825 -2.724  -47.214 -15.145 -3.760 -0.114 H76   58A 135 
58A H77   H77 H 0 1 N N N N N N -23.567 -2.748  -45.796 -16.714 -4.777 -1.743 H77   58A 136 
58A H78   H78 H 0 1 N N N N N N -23.431 -4.536  -45.682 -15.711 -6.247 -1.791 H78   58A 137 
58A H79   H79 H 0 1 N N N N N N -23.055 -2.528  -43.927 -16.086 -6.581 0.637  H79   58A 138 
58A H80   H80 H 0 1 N N N N N N -23.104 -4.316  -43.762 -17.089 -5.111 0.685  H80   58A 139 
58A C1    C45 C 0 1 N N N N N N ?       ?       ?       22.176  -3.634 -1.263 C1    58A 140 
58A C2    C46 C 0 1 N N N N N N ?       ?       ?       22.740  -5.056 -1.268 C2    58A 141 
58A C3    C47 C 0 1 N N N N N N ?       ?       ?       -17.981 -6.763 -0.373 C3    58A 142 
58A C4    C48 C 0 1 N N N N N N ?       ?       ?       -18.706 -7.298 0.864  C4    58A 143 
58A H33   H33 H 0 1 N N N N N N ?       ?       ?       22.695  -3.035 -2.012 H33   58A 144 
58A H35   H35 H 0 1 N N N N N N ?       ?       ?       22.320  -3.190 -0.279 H35   58A 145 
58A H48   H48 H 0 1 N N N N N N ?       ?       ?       22.597  -5.501 -2.253 H48   58A 146 
58A H66   H66 H 0 1 N N N N N N ?       ?       ?       23.805  -5.026 -1.035 H66   58A 147 
58A H68   H68 H 0 1 N N N N N N ?       ?       ?       22.222  -5.656 -0.520 H68   58A 148 
58A H81   H81 H 0 1 N N N N N N ?       ?       ?       -18.657 -6.128 -0.945 H81   58A 149 
58A H82   H82 H 0 1 N N N N N N ?       ?       ?       -17.655 -7.598 -0.992 H82   58A 150 
58A H83   H83 H 0 1 N N N N N N ?       ?       ?       -19.033 -6.463 1.484  H83   58A 151 
58A H84   H84 H 0 1 N N N N N N ?       ?       ?       -19.574 -7.880 0.552  H84   58A 152 
58A H85   H85 H 0 1 N N N N N N ?       ?       ?       -18.030 -7.933 1.436  H85   58A 153 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
58A "O3'" "C3'" SING N N 1   
58A "O2'" "C2'" SING N N 2   
58A "C3'" "C2'" SING N N 3   
58A "C3'" "C4'" SING N N 4   
58A "C2'" "C1'" SING N N 5   
58A OAX   PAV   DOUB N N 6   
58A OAA   CAB   DOUB N N 7   
58A "C5'" "C4'" SING N N 8   
58A "C5'" "O5'" SING N N 9   
58A "C4'" "O4'" SING N N 10  
58A "C1'" NAH   SING N N 11  
58A "C1'" "O4'" SING N N 12  
58A CAB   NAH   SING N N 13  
58A CAB   NAC   SING N N 14  
58A NAH   CAG   SING N N 15  
58A "O5'" PAR   SING N N 16  
58A NAC   CAD   DOUB N N 17  
58A CAG   CAF   DOUB N N 18  
58A PAV   OAU   SING N N 19  
58A PAV   OAW   SING N N 20  
58A PAV   OAY   SING N N 21  
58A CAD   CAF   SING N N 22  
58A CAD   NAE   SING N N 23  
58A OAU   PAR   SING N N 24  
58A CAZ   OAY   SING N N 25  
58A CAZ   CBA   SING N N 26  
58A PAR   OAT   DOUB N N 27  
58A PAR   OAS   SING N N 28  
58A CBA   CBC   SING N N 29  
58A CBA   OBB   SING N N 30  
58A CBC   OBD   SING N N 31  
58A OBD   CBE   SING N N 32  
58A OBB   CBU   SING N N 33  
58A OCK   CBU   DOUB N N 34  
58A OCL   CBE   DOUB N N 35  
58A CBU   CBV   SING N N 36  
58A CBE   CBF   SING N N 37  
58A CBF   CBG   SING N N 38  
58A CBG   CBH   SING N N 39  
58A CBV   CBW   SING N N 40  
58A CBW   CBX   SING N N 41  
58A CBH   CBI   SING N N 42  
58A CBI   CBJ   SING N N 43  
58A CBX   CBY   SING N N 44  
58A CBY   CBZ   SING N N 45  
58A CBK   CBJ   SING N N 46  
58A CBK   CBL   SING N N 47  
58A CBZ   CCA   SING N N 48  
58A CBL   CBM   SING N N 49  
58A CBM   CBN   DOUB N E 50  
58A CCA   CCB   SING N N 51  
58A CBN   CBO   SING N N 52  
58A CBO   CBP   SING N N 53  
58A CCB   CCC   SING N N 54  
58A CCC   CCD   DOUB N E 55  
58A CBP   CBQ   SING N N 56  
58A CBQ   CBR   SING N N 57  
58A CCE   CCD   SING N N 58  
58A CCE   CCF   SING N N 59  
58A CBR   CBS   SING N N 60  
58A CCF   CCG   SING N N 61  
58A CCG   CCH   SING N N 62  
58A CBS   CBT   SING N N 63  
58A CCH   CCI   SING N N 64  
58A CCI   CCJ   SING N N 65  
58A NAE   H1    SING N N 66  
58A NAE   H2    SING N N 67  
58A CAF   H3    SING N N 68  
58A CAG   H4    SING N N 69  
58A "C1'" H5    SING N N 70  
58A "C2'" H6    SING N N 71  
58A "O2'" H7    SING N N 72  
58A "C3'" H8    SING N N 73  
58A "O3'" H9    SING N N 74  
58A "C4'" H10   SING N N 75  
58A "C5'" H11   SING N N 76  
58A "C5'" H12   SING N N 77  
58A OAS   H13   SING N N 78  
58A OAW   H14   SING N N 79  
58A CAZ   H15   SING N N 80  
58A CAZ   H16   SING N N 81  
58A CBA   H17   SING N N 82  
58A CBV   H18   SING N N 83  
58A CBV   H19   SING N N 84  
58A CBW   H20   SING N N 85  
58A CBW   H21   SING N N 86  
58A CBX   H22   SING N N 87  
58A CBX   H23   SING N N 88  
58A CBY   H24   SING N N 89  
58A CBY   H25   SING N N 90  
58A CBZ   H26   SING N N 91  
58A CBZ   H27   SING N N 92  
58A CCA   H28   SING N N 93  
58A CCA   H29   SING N N 94  
58A CCB   H30   SING N N 95  
58A CCB   H31   SING N N 96  
58A CCC   H32   SING N N 97  
58A CCD   H34   SING N N 98  
58A CCE   H36   SING N N 99  
58A CCE   H37   SING N N 100 
58A CCF   H38   SING N N 101 
58A CCF   H39   SING N N 102 
58A CCG   H40   SING N N 103 
58A CCG   H41   SING N N 104 
58A CCH   H42   SING N N 105 
58A CCH   H43   SING N N 106 
58A CCI   H44   SING N N 107 
58A CCI   H45   SING N N 108 
58A CCJ   H46   SING N N 109 
58A CCJ   H47   SING N N 110 
58A CBC   H49   SING N N 111 
58A CBC   H50   SING N N 112 
58A CBF   H51   SING N N 113 
58A CBF   H52   SING N N 114 
58A CBG   H53   SING N N 115 
58A CBG   H54   SING N N 116 
58A CBH   H55   SING N N 117 
58A CBH   H56   SING N N 118 
58A CBI   H57   SING N N 119 
58A CBI   H58   SING N N 120 
58A CBJ   H59   SING N N 121 
58A CBJ   H60   SING N N 122 
58A CBK   H61   SING N N 123 
58A CBK   H62   SING N N 124 
58A CBL   H63   SING N N 125 
58A CBL   H64   SING N N 126 
58A CBM   H65   SING N N 127 
58A CBN   H67   SING N N 128 
58A CBO   H69   SING N N 129 
58A CBO   H70   SING N N 130 
58A CBP   H71   SING N N 131 
58A CBP   H72   SING N N 132 
58A CBQ   H73   SING N N 133 
58A CBQ   H74   SING N N 134 
58A CBR   H75   SING N N 135 
58A CBR   H76   SING N N 136 
58A CBS   H77   SING N N 137 
58A CBS   H78   SING N N 138 
58A CBT   H79   SING N N 139 
58A CBT   H80   SING N N 140 
58A CCJ   C1    SING N N 141 
58A C1    C2    SING N N 142 
58A CBT   C3    SING N N 143 
58A C3    C4    SING N N 144 
58A C1    H33   SING N N 145 
58A C1    H35   SING N N 146 
58A C2    H48   SING N N 147 
58A C2    H66   SING N N 148 
58A C2    H68   SING N N 149 
58A C3    H81   SING N N 150 
58A C3    H82   SING N N 151 
58A C4    H83   SING N N 152 
58A C4    H84   SING N N 153 
58A C4    H85   SING N N 154 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
58A SMILES           ACDLabs              12.01 "O=C1N(C=CC(=N1)N)C2OC(C(C2O)O)COP(=O)(O)OP(O)(OCC(COC(CCCCCCC\C=C\CCCCCCCC)=O)OC(CCCCCCCC=[C@H]CCCCCCCC)=O)=O"                                                                                                                                                                                                                                                       
58A InChI            InChI                1.03  "InChI=1S/C48H85N3O15P2/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-31-33-43(52)61-37-40(64-44(53)34-32-30-28-26-24-22-20-18-16-14-12-10-8-6-4-2)38-62-67(57,58)66-68(59,60)63-39-41-45(54)46(55)47(65-41)51-36-35-42(49)50-48(51)56/h17-20,35-36,40-41,45-47,54-55H,3-16,21-34,37-39H2,1-2H3,(H,57,58)(H,59,60)(H2,49,50,56)/b19-17+,20-18+/t40-,41-,45-,46-,47-/m1/s1" 
58A InChIKey         InChI                1.03  WVVFFOKRFKIBHD-ZIPNUMAKSA-N                                                                                                                                                                                                                                                                                                                                           
58A SMILES_CANONICAL CACTVS               3.385 "CCCCCCCC/C=C/CCCCCCCC(=O)OC[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N2C=CC(=NC2=O)N)OC(=O)CCCCCCC\C=C\CCCCCCCC"                                                                                                                                                                                                                                  
58A SMILES           CACTVS               3.385 "CCCCCCCCC=CCCCCCCCC(=O)OC[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)N2C=CC(=NC2=O)N)OC(=O)CCCCCCCC=CCCCCCCCC"                                                                                                                                                                                                                                            
58A SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CCCCCCCC/C=C/CCCCCCCC(=O)OC[C@H](COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)N2C=CC(=NC2=O)N)O)O)OC(=O)CCCCCCCC=CCCCCCCCC"                                                                                                                                                                                                                                     
58A SMILES           "OpenEye OEToolkits" 1.9.2 "CCCCCCCCC=CCCCCCCCC(=O)OCC(COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)N2C=CC(=NC2=O)N)O)O)OC(=O)CCCCCCCC=CCCCCCCCC"                                                                                                                                                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
58A "SYSTEMATIC NAME" ACDLabs              12.01 "5'-O-[(R)-{[(S)-{(2R)-2,3-bis[(9E)-octadec-9-enoyloxy]propoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]cytidine"                                                                                          
58A "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[(2R)-3-[[[(2R,3S,4R,5R)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-2-octadec-9-enoyloxy-propyl] (E)-octadec-9-enoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
58A "Create component" 2015-08-19 RCSB 
58A "Initial release"  2015-11-04 RCSB 
58A "Modify synonyms"  2020-05-26 PDBE 
58A "Modify synonyms"  2020-07-02 RCSB 
58A "Modify PCM"       2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 58A cytidinediphosphate-dioleoylglycerol PUBCHEM ? 
2 58A CDP-1,2-dioleoyl-sn-glycerol         CHEBI   ? 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 58A LEU None Lipid/lipid-like "Amino-acid side chain" "Any position" CCD CD1 ? ? 
2 58A THR None Lipid/lipid-like "Amino-acid side chain" "Any position" NAE OG1 ? ? 
# 
