data_4JA
#

_chem_comp.id                                   4JA
_chem_comp.name                                 "(2S)-3-[(6-deoxy-beta-D-glucopyranosyl)oxy]-2-hydroxypropyl dihydrogen phosphate"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C9 H19 O10 P"
_chem_comp.mon_nstd_parent_comp_id              YYK
_chem_comp.pdbx_synonyms                        
;(2S)-3-[(6-deoxy-beta-D-glucosyl)oxy]-2-hydroxypropyl dihydrogen phosphate;
(2S)-3-[(6-deoxy-D-glucosyl)oxy]-2-hydroxypropyl dihydrogen phosphate; (2S)-3-[(6-deoxy-glucosyl)oxy]-2-hydroxypropyl
dihydrogen phosphate
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-11-23
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       318.215
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    4JA
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2N9F
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  4JA  "(2S)-3-[(6-deoxy-beta-D-glucosyl)oxy]-2-hydroxypropyl dihydrogen phosphate"  PDB  ?  
2  4JA  "(2S)-3-[(6-deoxy-D-glucosyl)oxy]-2-hydroxypropyl dihydrogen phosphate"       PDB  ?  
3  4JA  "(2S)-3-[(6-deoxy-glucosyl)oxy]-2-hydroxypropyl dihydrogen phosphate"         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
4JA  P       P       P  0  1  N  N  N   -8.735   0.422  3.698   5.357   0.150  -0.157  P       4JA   1  
4JA  O2      O2      O  0  1  N  N  N   -3.320   3.495  8.243  -3.024  -2.573  -0.368  O2      4JA   2  
4JA  O3      O3      O  0  1  N  N  N   -1.287   1.576  7.734  -5.672  -1.614   0.134  O3      4JA   3  
4JA  O4      O4      O  0  1  N  N  N   -0.271   1.485  5.117  -6.083   1.169  -0.380  O4      4JA   4  
4JA  O5      O5      O  0  1  N  N  N   -3.634   2.908  4.596  -2.464   1.008   0.170  O5      4JA   5  
4JA  C1      C1      C  0  1  N  N  R   -3.883   3.591  5.871  -2.178  -0.309  -0.307  C1      4JA   6  
4JA  C2      C2      C  0  1  N  N  R   -3.273   2.750  7.004  -3.277  -1.268   0.156  C2      4JA   7  
4JA  C3      C3      C  0  1  N  N  S   -1.807   2.428  6.695  -4.631  -0.766  -0.354  C3      4JA   8  
4JA  C4      C4      C  0  1  N  N  S   -1.673   1.710  5.347  -4.856   0.663   0.150  C4      4JA   9  
4JA  C5      C5      C  0  1  N  N  R   -2.239   2.619  4.251  -3.696   1.548  -0.313  C5      4JA  10  
4JA  C6      C6      C  0  1  N  N  N   -2.293   2.017  2.857  -3.883   2.964   0.237  C6      4JA  11  
4JA  OP1     OP1     O  0  1  N  N  N   -8.979  -0.198  5.019   5.465   1.596   0.140  OP1     4JA  12  
4JA  OP2     OP2     O  0  1  N  N  N   -9.702   0.214  2.598   6.474  -0.655   0.677  OP2     4JA  13  
4JA  "O5'"   "O5'"   O  0  1  N  N  N   -8.495   2.002  3.890   3.893  -0.375   0.261  "O5'"   4JA  14  
4JA  "C5'"   "C5'"   C  0  1  N  N  N   -7.448   2.466  4.724   2.686   0.214  -0.227  "C5'"   4JA  15  
4JA  "C3'"   "C3'"   C  0  1  N  N  S   -7.437   3.996  4.871   1.483  -0.523   0.365  "C3'"   4JA  16  
4JA  "C2'"   "C2'"   C  0  1  N  N  N   -5.987   4.455  5.096   0.195   0.025  -0.252  "C2'"   4JA  17  
4JA  O1      O1      O  0  1  N  N  N   -5.320   3.708  6.109  -0.919  -0.740   0.213  O1      4JA  18  
4JA  "O3'"   "O3'"   O  0  1  N  N  N   -8.306   4.402  5.924   1.454  -0.327   1.780  "O3'"   4JA  19  
4JA  HO2     HO2     H  0  1  N  Y  N   -2.943   2.973  8.941  -2.179  -2.952  -0.088  HO2     4JA  20  
4JA  HO3     HO3     H  0  1  N  Y  N   -1.367   2.014  8.573  -5.588  -2.537  -0.141  HO3     4JA  21  
4JA  HO4     HO4     H  0  1  N  Y  N    0.076   0.921  5.799  -6.290   2.072  -0.101  HO4     4JA  22  
4JA  H1      H1      H  0  1  N  N  N   -3.415   4.586  5.866  -2.138  -0.300  -1.396  H1      4JA  23  
4JA  H2      H2      H  0  1  N  N  N   -3.837   1.811  7.100  -3.290  -1.309   1.245  H2      4JA  24  
4JA  H3      H3      H  0  1  N  N  N   -1.237   3.368  6.656  -4.636  -0.774  -1.444  H3      4JA  25  
4JA  H4      H4      H  0  1  N  N  N   -2.230   0.762  5.371  -4.903   0.662   1.239  H4      4JA  26  
4JA  H5      H5      H  0  1  N  N  N   -1.657   3.552  4.221  -3.676   1.581  -1.403  H5      4JA  27  
4JA  H61     H61     H  0  1  N  N  N   -1.274   1.771  2.524  -3.056   3.593  -0.092  H61     4JA  28  
4JA  H62     H62     H  0  1  N  N  N   -2.904   1.102  2.876  -4.822   3.376  -0.132  H62     4JA  29  
4JA  H63     H63     H  0  1  N  N  N   -2.741   2.742  2.162  -3.903   2.930   1.326  H63     4JA  30  
4JA  HOP2    HOP2    H  0  0  N  N  N  -10.415  -0.335  2.902   7.382  -0.389   0.475  HOP2    4JA  31  
4JA  "H5''"  "H5''"  H  0  0  N  N  N   -7.568   2.018  5.721   2.650   1.263   0.065  "H5''"  4JA  32  
4JA  "H5'"   "H5'"   H  0  1  N  N  N   -6.488   2.147  4.292   2.659   0.139  -1.314  "H5'"   4JA  33  
4JA  "H3'"   "H3'"   H  0  1  N  N  N   -7.786   4.430  3.922   1.566  -1.588   0.148  "H3'"   4JA  34  
4JA  "H2''"  "H2''"  H  0  0  N  N  N   -5.432   4.341  4.153   0.067   1.067   0.040  "H2''"  4JA  35  
4JA  "H2'"   "H2'"   H  0  1  N  N  N   -5.996   5.515  5.390   0.255  -0.044  -1.338  "H2'"   4JA  36  
4JA  "HO3'"  "HO3'"  H  0  0  N  Y  N   -8.288   5.349  6.002   1.381   0.600   2.048  "HO3'"  4JA  37  
4JA  OP3     OP3     O  0  1  N  Y  N        ?       ?      ?   5.584  -0.093  -1.732  OP3     4JA  38  
4JA  HOP3    HOP3    H  0  0  N  Y  N        ?       ?      ?   5.527  -1.021  -2.000  HOP3    4JA  39  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4JA  OP2    P       SING  N  N   1  
4JA  C6     C5      SING  N  N   2  
4JA  P      "O5'"   SING  N  N   3  
4JA  P      OP1     DOUB  N  N   4  
4JA  "O5'"  "C5'"   SING  N  N   5  
4JA  C5     O5      SING  N  N   6  
4JA  C5     C4      SING  N  N   7  
4JA  O5     C1      SING  N  N   8  
4JA  "C5'"  "C3'"   SING  N  N   9  
4JA  "C3'"  "C2'"   SING  N  N  10  
4JA  "C3'"  "O3'"   SING  N  N  11  
4JA  "C2'"  O1      SING  N  N  12  
4JA  O4     C4      SING  N  N  13  
4JA  C4     C3      SING  N  N  14  
4JA  C1     O1      SING  N  N  15  
4JA  C1     C2      SING  N  N  16  
4JA  C3     C2      SING  N  N  17  
4JA  C3     O3      SING  N  N  18  
4JA  C2     O2      SING  N  N  19  
4JA  O2     HO2     SING  N  N  20  
4JA  O3     HO3     SING  N  N  21  
4JA  O4     HO4     SING  N  N  22  
4JA  C1     H1      SING  N  N  23  
4JA  C2     H2      SING  N  N  24  
4JA  C3     H3      SING  N  N  25  
4JA  C4     H4      SING  N  N  26  
4JA  C5     H5      SING  N  N  27  
4JA  C6     H61     SING  N  N  28  
4JA  C6     H62     SING  N  N  29  
4JA  C6     H63     SING  N  N  30  
4JA  OP2    HOP2    SING  N  N  31  
4JA  "C5'"  "H5''"  SING  N  N  32  
4JA  "C5'"  "H5'"   SING  N  N  33  
4JA  "C3'"  "H3'"   SING  N  N  34  
4JA  "C2'"  "H2''"  SING  N  N  35  
4JA  "C2'"  "H2'"   SING  N  N  36  
4JA  "O3'"  "HO3'"  SING  N  N  37  
4JA  P      OP3     SING  N  N  38  
4JA  OP3    HOP3    SING  N  N  39  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
4JA  SMILES            ACDLabs               12.01  "P(OCC(COC1OC(C(O)C(O)C1O)C)O)(=O)(O)O"  
4JA  InChI             InChI                 1.03   "InChI=1S/C9H19O10P/c1-4-6(11)7(12)8(13)9(19-4)17-2-5(10)3-18-20(14,15)16/h4-13H,2-3H2,1H3,(H2,14,15,16)/t4-,5+,6-,7+,8-,9-/m1/s1"  
4JA  InChIKey          InChI                 1.03   MDUJBTMCZXACIH-LTUMISQWSA-N  
4JA  SMILES_CANONICAL  CACTVS                3.385  "C[C@H]1O[C@@H](OC[C@H](O)CO[P](O)(O)=O)[C@H](O)[C@@H](O)[C@@H]1O"  
4JA  SMILES            CACTVS                3.385  "C[CH]1O[CH](OC[CH](O)CO[P](O)(O)=O)[CH](O)[CH](O)[CH]1O"  
4JA  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C[C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)OC[C@@H](COP(=O)(O)O)O)O)O)O"  
4JA  SMILES            "OpenEye OEToolkits"  1.7.6  "CC1C(C(C(C(O1)OCC(COP(=O)(O)O)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
4JA  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2S)-3-[(6-deoxy-beta-D-glucopyranosyl)oxy]-2-hydroxypropyl dihydrogen phosphate"  
4JA  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "[(2S)-3-[(2R,3R,4S,5S,6R)-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2-oxidanyl-propyl] dihydrogen phosphate"  
#
_pdbx_chem_comp_related.comp_id            4JA
_pdbx_chem_comp_related.related_comp_id    YYK
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  4JA  C1   YYK  C1   "Carbohydrate core"  
 2  4JA  C2   YYK  C2   "Carbohydrate core"  
 3  4JA  C3   YYK  C3   "Carbohydrate core"  
 4  4JA  C4   YYK  C4   "Carbohydrate core"  
 5  4JA  C5   YYK  C5   "Carbohydrate core"  
 6  4JA  C6   YYK  C6   "Carbohydrate core"  
 7  4JA  O1   YYK  O1   "Carbohydrate core"  
 8  4JA  O2   YYK  O2   "Carbohydrate core"  
 9  4JA  O3   YYK  O3   "Carbohydrate core"  
10  4JA  O4   YYK  O4   "Carbohydrate core"  
11  4JA  O5   YYK  O5   "Carbohydrate core"  
12  4JA  H1   YYK  H1   "Carbohydrate core"  
13  4JA  H2   YYK  H2   "Carbohydrate core"  
14  4JA  H3   YYK  H3   "Carbohydrate core"  
15  4JA  H4   YYK  H4   "Carbohydrate core"  
16  4JA  H5   YYK  H5   "Carbohydrate core"  
17  4JA  H61  YYK  H61  "Carbohydrate core"  
18  4JA  H62  YYK  H62  "Carbohydrate core"  
19  4JA  H63  YYK  H63  "Carbohydrate core"  
20  4JA  HO2  YYK  HO2  "Carbohydrate core"  
21  4JA  HO3  YYK  HO3  "Carbohydrate core"  
22  4JA  HO4  YYK  HO4  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
4JA  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
4JA  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
4JA  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
4JA  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
4JA  "Create component"          2015-11-23  RCSB  
4JA  "Initial release"           2016-08-31  RCSB  
4JA  "Other modification"        2020-07-03  RCSB  
4JA  "Modify parent residue"     2020-07-17  RCSB  
4JA  "Modify synonyms"           2020-07-17  RCSB  
4JA  "Modify internal type"      2020-07-17  RCSB  
4JA  "Modify linking type"       2020-07-17  RCSB  
4JA  "Modify component atom id"  2020-07-17  RCSB  
4JA  "Modify leaving atom flag"  2020-07-17  RCSB  
##
