data_40A
# 
_chem_comp.id                                    40A 
_chem_comp.name                                  "N-[(2S)-2-aminopropyl]-N-[(6-amino-9H-purin-9-yl)acetyl]glycine" 
_chem_comp.type                                  PEPTIDE-LIKE 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H17 N7 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-04-26 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        307.308 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     40A 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2KVJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
40A C      "C'"   C 0 1 N N N Y N Y 33.358 28.946 45.553 -3.507 -1.954 0.387  "C'"   40A 1  
40A N1     N1     N 0 1 Y N N N N N 31.106 23.574 40.124 4.500  1.101  0.839  N1     40A 2  
40A C2     C2     C 0 1 Y N N N N N 32.188 24.090 40.680 3.401  1.390  1.511  C2     40A 3  
40A N3     N3     N 0 1 Y N N N N N 32.419 24.301 41.964 2.265  0.755  1.315  N3     40A 4  
40A C4     C4     C 0 1 Y N N N N N 31.366 23.928 42.739 2.180  -0.220 0.416  C4     40A 5  
40A C5     C5     C 0 1 Y N N N N N 30.177 23.411 42.318 3.322  -0.565 -0.326 C5     40A 6  
40A C6     C6     C 0 1 Y N N N N N 30.107 23.232 40.924 4.511  0.141  -0.081 C6     40A 7  
40A N6     N6     N 0 1 N N N N N N 29.078 22.747 40.277 5.668  -0.154 -0.781 N6     40A 8  
40A N7     N7     N 0 1 Y N N N N N 29.299 23.214 43.390 2.967  -1.572 -1.160 N7     40A 9  
40A C8     C8     C 0 1 Y N N N N N 30.004 23.599 44.417 1.710  -1.859 -0.981 C8     40A 10 
40A N9     N9     N 0 1 Y N N N N N 31.280 23.998 44.115 1.180  -1.052 -0.019 N9     40A 11 
40A N      "N1'"  N 0 1 N N N Y Y N 33.135 24.630 48.520 -1.635 2.846  0.213  "N1'"  40A 12 
40A O      "O1'"  O 0 1 N N N Y N Y 33.482 30.120 45.857 -3.377 -2.138 -0.800 "O1'"  40A 13 
40A CA     "C2'"  C 0 1 N N S Y N N 34.020 25.718 48.272 -3.038 2.462  0.013  "C2'"  40A 14 
40A C2M    C2M    C 0 1 N N N N N N 35.339 25.290 48.817 -3.750 3.539  -0.808 C2M    40A 15 
40A "C3'"  "C3'"  C 0 1 N N N Y N N 34.123 25.999 46.791 -3.100 1.128  -0.734 "C3'"  40A 16 
40A "N4'"  "N4'"  N 0 1 N N N Y N N 32.891 26.574 46.238 -2.318 0.125  -0.008 "N4'"  40A 17 
40A "C5'"  "C5'"  C 0 1 N N N Y N N 32.712 28.009 46.546 -2.957 -0.701 1.019  "C5'"  40A 18 
40A "C7'"  "C7'"  C 0 1 N N N N N N 32.048 25.947 45.400 -1.009 -0.039 -0.285 "C7'"  40A 19 
40A "O7'"  "O7'"  O 0 1 N N N N N N 31.108 26.527 44.878 -0.479 0.645  -1.135 "O7'"  40A 20 
40A "C8'"  "C8'"  C 0 1 N N N N N N 32.312 24.519 45.047 -0.204 -1.070 0.462  "C8'"  40A 21 
40A H3     H2     H 0 1 N N N N N N 32.980 24.374 40.003 3.436  2.177  2.250  H2     40A 22 
40A H8     H8     H 0 1 N N N N N N 29.614 23.603 45.424 1.167  -2.624 -1.517 H8     40A 23 
40A H      "HN1'" H 0 0 N N N Y Y N 33.474 23.812 48.055 -1.158 2.948  -0.671 "HN1'" 40A 24 
40A HA     "H22'" H 0 0 N N N Y N N 33.664 26.646 48.744 -3.528 2.359  0.981  "H22'" 40A 25 
40A "H13'" "H13'" H 0 0 N N N Y N N 34.944 26.713 46.629 -4.137 0.799  -0.804 "H13'" 40A 26 
40A "H23'" "H23'" H 0 0 N N N Y N N 34.329 25.052 46.271 -2.690 1.253  -1.736 "H23'" 40A 27 
40A "H15'" "H15'" H 0 0 N N N Y N N 33.161 28.201 47.532 -3.770 -0.140 1.481  "H15'" 40A 28 
40A "H25'" "H25'" H 0 0 N N N Y N N 31.632 28.220 46.556 -2.224 -0.969 1.779  "H25'" 40A 29 
40A HN6    HN6    H 0 1 N N N N N N 28.899 21.814 40.588 5.664  -0.857 -1.450 HN6    40A 30 
40A HN6A   HN6A   H 0 0 N N N N N N 29.274 22.740 39.296 6.483  0.341  -0.603 HN6A   40A 31 
40A "H18'" "H18'" H 0 0 N N N N N N 32.299 23.916 45.967 -0.634 -2.058 0.294  "H18'" 40A 32 
40A "H28'" "H28'" H 0 0 N N N N N N 33.298 24.447 44.564 -0.221 -0.843 1.528  "H28'" 40A 33 
40A H2M    H2M    H 0 1 N N N N N N 35.242 25.088 49.894 -3.706 4.490  -0.275 H2M    40A 34 
40A H2MA   H2MA   H 0 0 N N N N N N 36.078 26.089 48.659 -3.260 3.642  -1.776 H2MA   40A 35 
40A H2MB   H2MB   H 0 0 N N N N N N 35.670 24.377 48.301 -4.792 3.254  -0.956 H2MB   40A 36 
40A OXT    OXT    O 0 1 N Y N Y N Y 33.814 28.467 44.285 -4.145 -2.862 1.142  OXT    40A 37 
40A H2     HNXT   H 0 0 N Y N Y Y N 32.224 24.855 48.175 -1.566 3.691  0.760  HNXT   40A 38 
40A HXT    HXT    H 0 1 N Y N Y N Y 34.191 29.186 43.791 -4.483 -3.648 0.691  HXT    40A 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
40A C      O      DOUB N N 1  
40A C      "C5'"  SING N N 2  
40A C      OXT    SING N N 3  
40A N1     C2     DOUB Y N 4  
40A N1     C6     SING Y N 5  
40A C2     N3     SING Y N 6  
40A N3     C4     DOUB Y N 7  
40A C4     N9     SING Y N 8  
40A C5     C4     SING Y N 9  
40A C5     N7     SING Y N 10 
40A C6     C5     DOUB Y N 11 
40A N6     C6     SING N N 12 
40A N6     HN6A   SING N N 13 
40A N7     C8     DOUB Y N 14 
40A C8     H8     SING N N 15 
40A N9     C8     SING Y N 16 
40A N9     "C8'"  SING N N 17 
40A N      H2     SING N N 18 
40A CA     N      SING N N 19 
40A CA     HA     SING N N 20 
40A CA     C2M    SING N N 21 
40A C2M    H2MA   SING N N 22 
40A "C3'"  CA     SING N N 23 
40A "N4'"  "C3'"  SING N N 24 
40A "N4'"  "C5'"  SING N N 25 
40A "C5'"  "H15'" SING N N 26 
40A "C5'"  "H25'" SING N N 27 
40A "C7'"  "N4'"  SING N N 28 
40A "O7'"  "C7'"  DOUB N N 29 
40A "C8'"  "C7'"  SING N N 30 
40A "C8'"  "H18'" SING N N 31 
40A H3     C2     SING N N 32 
40A H      N      SING N N 33 
40A "H13'" "C3'"  SING N N 34 
40A "H23'" "C3'"  SING N N 35 
40A HN6    N6     SING N N 36 
40A "H28'" "C8'"  SING N N 37 
40A H2M    C2M    SING N N 38 
40A H2MB   C2M    SING N N 39 
40A OXT    HXT    SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
40A SMILES           ACDLabs              12.01 "O=C(O)CN(C(=O)Cn1c2ncnc(c2nc1)N)CC(N)C"                                                                                                  
40A SMILES_CANONICAL CACTVS               3.370 "C[C@H](N)CN(CC(O)=O)C(=O)Cn1cnc2c(N)ncnc12"                                                                                              
40A SMILES           CACTVS               3.370 "C[CH](N)CN(CC(O)=O)C(=O)Cn1cnc2c(N)ncnc12"                                                                                               
40A SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C[C@@H](CN(CC(=O)O)C(=O)Cn1cnc2c1ncnc2N)N"                                                                                               
40A SMILES           "OpenEye OEToolkits" 1.7.0 "CC(CN(CC(=O)O)C(=O)Cn1cnc2c1ncnc2N)N"                                                                                                    
40A InChI            InChI                1.03  "InChI=1S/C12H17N7O3/c1-7(13)2-18(4-9(21)22)8(20)3-19-6-17-10-11(14)15-5-16-12(10)19/h5-7H,2-4,13H2,1H3,(H,21,22)(H2,14,15,16)/t7-/m0/s1" 
40A InChIKey         InChI                1.03  XTYSVUVMWQVHKO-ZETCQYMHSA-N                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
40A "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(2S)-2-aminopropyl]-N-[(6-amino-9H-purin-9-yl)acetyl]glycine"           
40A "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "2-[2-(6-aminopurin-9-yl)ethanoyl-[(2S)-2-azanylpropyl]amino]ethanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
40A "Create component"  2010-04-26 RCSB 
40A "Modify descriptor" 2011-06-04 RCSB 
40A "Modify backbone"   2023-11-03 PDBE 
40A "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            40A 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain and backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
