data_3QA
#

_chem_comp.id                                   3QA
_chem_comp.name                                 "(3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-(2-{[2-(2-hydroxyethoxy)ethyl]sulfanyl}ethyl)pyrrolidin-3-ol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C17 H27 N5 O3 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "2-(2-hydroxyethoxy)ethylthiomethyl-DADMe-Immucillin-A"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2014-10-06
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       381.493
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    3QA
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4WKP
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3QA  "C5'"  C1   C  0  1  N  N  N  38.009  74.000  22.750   1.574  -1.906   0.200  "C5'"  3QA   1  
3QA  "C4'"  C2   C  0  1  N  N  S  37.056  73.183  23.619   0.189  -1.416   0.627  "C4'"  3QA   2  
3QA  "C3'"  C3   C  0  1  N  N  R  35.702  73.841  23.806  -0.823  -2.584   0.647  "C3'"  3QA   3  
3QA  "O3'"  O1   O  0  1  N  N  N  34.655  72.872  23.891  -1.025  -3.043   1.985  "O3'"  3QA   4  
3QA  "C2'"  C4   C  0  1  N  N  N  35.813  74.508  25.144  -2.128  -1.995   0.081  "C2'"  3QA   5  
3QA  "C1'"  C5   C  0  1  N  N  N  37.614  73.008  25.030  -0.406  -0.460  -0.436  "C1'"  3QA   6  
3QA  C8     C6   C  0  1  Y  N  N  39.448  74.409  27.818  -5.010  -1.013  -1.386  C8     3QA   7  
3QA  N7     N1   N  0  1  Y  N  N  40.304  75.467  27.879  -6.235  -0.632  -0.921  N7     3QA   8  
3QA  C5     C7   C  0  1  Y  N  N  39.680  76.581  27.473  -6.135   0.583  -0.284  C5     3QA   9  
3QA  C6     C8   C  0  1  Y  N  N  40.048  77.986  27.303  -7.041   1.429   0.365  C6     3QA  10  
3QA  N1     N2   N  0  1  Y  N  N  39.102  78.846  26.843  -6.589   2.566   0.886  N1     3QA  11  
3QA  C2     C9   C  0  1  Y  N  N  37.866  78.413  26.551  -5.314   2.902   0.800  C2     3QA  12  
3QA  N3     N3   N  0  1  Y  N  N  37.442  77.151  26.671  -4.424   2.141   0.201  N3     3QA  13  
3QA  C4     C10  C  0  1  Y  N  N  38.317  76.227  27.140  -4.788   0.981  -0.351  C4     3QA  14  
3QA  "N1'"  N4   N  0  1  N  N  N  36.525  73.464  25.908  -1.870  -0.568  -0.210  "N1'"  3QA  15  
3QA  "C6'"  C11  C  0  1  N  N  N  37.572  73.899  21.294   2.578  -0.757   0.310  "C6'"  3QA  16  
3QA  "S6'"  S1   S  0  1  N  N  N  38.917  74.174  20.189   4.220  -1.339  -0.196  "S6'"  3QA  17  
3QA  C20    C12  C  0  1  N  N  N  39.982  72.762  20.187   5.254   0.139  -0.001  C20    3QA  18  
3QA  C21    C13  C  0  1  N  N  N  39.586  71.814  19.064   6.695  -0.191  -0.395  C21    3QA  19  
3QA  O22    O2   O  0  1  N  N  N  39.815  72.425  17.779   7.510   0.972  -0.241  O22    3QA  20  
3QA  C10    C14  C  0  1  N  N  N  36.981  73.882  27.234  -2.620  -0.128  -1.393  C10    3QA  21  
3QA  C9     C15  C  0  1  Y  N  N  38.186  74.784  27.354  -4.091  -0.082  -1.068  C9     3QA  22  
3QA  N6     N5   N  0  1  N  N  N  41.297  78.359  27.607  -8.381   1.090   0.463  N6     3QA  23  
3QA  C23    C16  C  0  1  N  N  N  40.379  71.527  16.812   8.882   0.771  -0.585  C23    3QA  24  
3QA  C24    C17  C  0  1  N  N  N  39.366  70.448  16.419   9.656   2.076  -0.382  C24    3QA  25  
3QA  O25    O3   O  0  1  N  N  N  38.970  70.623  15.059   9.660   2.417   1.005  O25    3QA  26  
3QA  H1     H1   H  0  1  N  N  N  39.031  73.607  22.855   1.886  -2.725   0.849  H1     3QA  27  
3QA  H2     H2   H  0  1  N  N  N  37.986  75.053  23.069   1.533  -2.256  -0.832  H2     3QA  28  
3QA  H3     H3   H  0  1  N  N  N  36.916  72.192  23.163   0.237  -0.931   1.602  H3     3QA  29  
3QA  H4     H4   H  0  1  N  N  N  35.516  74.580  23.013  -0.470  -3.401   0.017  H4     3QA  30  
3QA  H5     H5   H  0  1  N  N  N  33.822  73.314  24.008  -1.651  -3.776   2.059  H5     3QA  31  
3QA  H6     H6   H  0  1  N  N  N  36.397  75.438  25.087  -2.404  -2.517  -0.836  H6     3QA  32  
3QA  H7     H7   H  0  1  N  N  N  34.824  74.722  25.574  -2.927  -2.086   0.817  H7     3QA  33  
3QA  H8     H8   H  0  1  N  N  N  37.857  71.953  25.225  -0.066   0.562  -0.268  H8     3QA  34  
3QA  H9     H9   H  0  1  N  N  N  38.514  73.624  25.173  -0.147  -0.793  -1.441  H9     3QA  35  
3QA  H10    H10  H  0  1  N  N  N  39.714  73.400  28.096  -4.808  -1.926  -1.924  H10    3QA  36  
3QA  H11    H11  H  0  1  N  N  N  41.256  75.419  28.182  -7.054  -1.141  -1.025  H11    3QA  37  
3QA  H12    H12  H  0  1  N  N  N  37.157  79.143  26.190  -4.991   3.835   1.237  H12    3QA  38  
3QA  H14    H14  H  0  1  N  N  N  36.794  74.652  21.102   2.266   0.061  -0.338  H14    3QA  39  
3QA  H15    H15  H  0  1  N  N  N  37.162  72.894  21.114   2.619  -0.408   1.342  H15    3QA  40  
3QA  H16    H16  H  0  1  N  N  N  39.897  72.240  21.152   4.876   0.935  -0.641  H16    3QA  41  
3QA  H17    H17  H  0  1  N  N  N  41.021  73.090  20.038   5.228   0.466   1.039  H17    3QA  42  
3QA  H18    H18  H  0  1  N  N  N  38.519  71.565  19.161   7.074  -0.988   0.246  H18    3QA  43  
3QA  H19    H19  H  0  1  N  N  N  40.185  70.895  19.139   6.722  -0.518  -1.434  H19    3QA  44  
3QA  H20    H20  H  0  1  N  N  N  36.140  74.406  27.711  -2.282   0.865  -1.689  H20    3QA  45  
3QA  H21    H21  H  0  1  N  N  N  37.210  72.965  27.798  -2.451  -0.828  -2.212  H21    3QA  46  
3QA  H22    H22  H  0  1  N  N  N  41.402  79.340  27.442  -8.700   0.258   0.079  H22    3QA  47  
3QA  H23    H23  H  0  1  N  N  N  41.478  78.162  28.571  -9.000   1.684   0.915  H23    3QA  48  
3QA  H24    H24  H  0  1  N  N  N  41.270  71.046  17.242   9.306  -0.005   0.052  H24    3QA  49  
3QA  H25    H25  H  0  1  N  N  N  40.666  72.096  15.916   8.954   0.464  -1.628  H25    3QA  50  
3QA  H26    H26  H  0  1  N  N  N  38.482  70.524  17.069  10.681   1.947  -0.728  H26    3QA  51  
3QA  H27    H27  H  0  1  N  N  N  39.825  69.456  16.540   9.177   2.873  -0.951  H27    3QA  52  
3QA  H28    H28  H  0  1  N  N  N  38.342  69.951  14.823  10.134   3.235   1.208  H28    3QA  53  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3QA  O25    C24    SING  N  N   1  
3QA  C24    C23    SING  N  N   2  
3QA  C23    O22    SING  N  N   3  
3QA  O22    C21    SING  N  N   4  
3QA  C21    C20    SING  N  N   5  
3QA  C20    "S6'"  SING  N  N   6  
3QA  "S6'"  "C6'"  SING  N  N   7  
3QA  "C6'"  "C5'"  SING  N  N   8  
3QA  "C5'"  "C4'"  SING  N  N   9  
3QA  "C4'"  "C3'"  SING  N  N  10  
3QA  "C4'"  "C1'"  SING  N  N  11  
3QA  "C3'"  "O3'"  SING  N  N  12  
3QA  "C3'"  "C2'"  SING  N  N  13  
3QA  "C1'"  "N1'"  SING  N  N  14  
3QA  "C2'"  "N1'"  SING  N  N  15  
3QA  "N1'"  C10    SING  N  N  16  
3QA  C2     N3     DOUB  Y  N  17  
3QA  C2     N1     SING  Y  N  18  
3QA  N3     C4     SING  Y  N  19  
3QA  N1     C6     DOUB  Y  N  20  
3QA  C4     C9     SING  Y  N  21  
3QA  C4     C5     DOUB  Y  N  22  
3QA  C10    C9     SING  N  N  23  
3QA  C6     C5     SING  Y  N  24  
3QA  C6     N6     SING  N  N  25  
3QA  C9     C8     DOUB  Y  N  26  
3QA  C5     N7     SING  Y  N  27  
3QA  C8     N7     SING  Y  N  28  
3QA  "C5'"  H1     SING  N  N  29  
3QA  "C5'"  H2     SING  N  N  30  
3QA  "C4'"  H3     SING  N  N  31  
3QA  "C3'"  H4     SING  N  N  32  
3QA  "O3'"  H5     SING  N  N  33  
3QA  "C2'"  H6     SING  N  N  34  
3QA  "C2'"  H7     SING  N  N  35  
3QA  "C1'"  H8     SING  N  N  36  
3QA  "C1'"  H9     SING  N  N  37  
3QA  C8     H10    SING  N  N  38  
3QA  N7     H11    SING  N  N  39  
3QA  C2     H12    SING  N  N  40  
3QA  "C6'"  H14    SING  N  N  41  
3QA  "C6'"  H15    SING  N  N  42  
3QA  C20    H16    SING  N  N  43  
3QA  C20    H17    SING  N  N  44  
3QA  C21    H18    SING  N  N  45  
3QA  C21    H19    SING  N  N  46  
3QA  C10    H20    SING  N  N  47  
3QA  C10    H21    SING  N  N  48  
3QA  N6     H22    SING  N  N  49  
3QA  N6     H23    SING  N  N  50  
3QA  C23    H24    SING  N  N  51  
3QA  C23    H25    SING  N  N  52  
3QA  C24    H26    SING  N  N  53  
3QA  C24    H27    SING  N  N  54  
3QA  O25    H28    SING  N  N  55  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3QA  SMILES            ACDLabs               12.01  "OCCOCCSCCC3CN(Cc2cnc1c2ncnc1N)CC3O"  
3QA  InChI             InChI                 1.03   "InChI=1S/C17H27N5O3S/c18-17-16-15(20-11-21-17)13(7-19-16)9-22-8-12(14(24)10-22)1-5-26-6-4-25-3-2-23/h7,11-12,14,19,23-24H,1-6,8-10H2,(H2,18,20,21)/t12-,14-/m0/s1"  
3QA  InChIKey          InChI                 1.03   NLPFBCRTOQVKFZ-JSGCOSHPSA-N  
3QA  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2c(CN3C[C@H](O)[C@@H](CCSCCOCCO)C3)c[nH]c12"  
3QA  SMILES            CACTVS                3.385  "Nc1ncnc2c(CN3C[CH](O)[CH](CCSCCOCCO)C3)c[nH]c12"  
3QA  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "c1c(c2c([nH]1)c(ncn2)N)CN3C[C@@H]([C@H](C3)O)CCSCCOCCO"  
3QA  SMILES            "OpenEye OEToolkits"  1.9.2  "c1c(c2c([nH]1)c(ncn2)N)CN3CC(C(C3)O)CCSCCOCCO"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3QA  "SYSTEMATIC NAME"  ACDLabs               12.01  "(3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-(2-{[2-(2-hydroxyethoxy)ethyl]sulfanyl}ethyl)pyrrolidin-3-ol"  
3QA  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  "(3R,4S)-1-[(4-azanyl-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-[2-[2-(2-hydroxyethyloxy)ethylsulfanyl]ethyl]pyrrolidin-3-ol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3QA  "Create component"  2014-10-06  RCSB  
3QA  "Initial release"   2015-11-25  RCSB  
3QA  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     3QA
_pdbx_chem_comp_synonyms.name        "2-(2-hydroxyethoxy)ethylthiomethyl-DADMe-Immucillin-A"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
