data_06A
#

_chem_comp.id                                   06A
_chem_comp.name                                 " 1-cyclopentyl-6-[[(2R)-1-(6-fluoranyl-2-azaspiro[3.3]heptan-2-yl)-1-oxidanylidene-propan-2-yl]amino]-5H-pyrazolo[3,4-d]pyrimidin-4-one"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H25 F N6 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-06-07
_chem_comp.pdbx_modified_date                   2022-04-08
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       388.439
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    06A
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7F0I
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
06A  C1   C1   C  0  1  N  N  N  -31.400  44.830   -9.802   1.251  -1.962   0.091  C1   06A   1  
06A  C2   C2   C  0  1  Y  N  N  -29.317  44.042   -9.507   2.930  -0.386  -0.115  C2   06A   2  
06A  C3   C3   C  0  1  Y  N  N  -29.474  43.882   -8.132   3.854  -1.398  -0.424  C3   06A   3  
06A  C4   C4   C  0  1  Y  N  N  -28.191  43.510   -7.688   5.100  -0.772  -0.634  C4   06A   4  
06A  C5   C5   C  0  1  N  N  N  -27.303  43.576  -11.072   3.053   2.116   0.117  C5   06A   5  
06A  C6   C6   C  0  1  N  N  N  -28.102  42.939  -12.197   3.780   2.771   1.304  C6   06A   6  
06A  C7   C7   C  0  1  N  N  N  -27.322  43.313  -13.430   4.423   4.066   0.767  C7   06A   7  
06A  C8   C8   C  0  1  N  N  N  -26.368  44.474  -13.037   3.574   4.423  -0.479  C8   06A   8  
06A  C9   C9   C  0  1  N  N  N  -26.753  44.867  -11.650   3.278   3.035  -1.101  C9   06A   9  
06A  C10  C10  C  0  1  N  N  R  -32.450  45.851  -11.904  -0.999  -1.160   0.666  C10  06A  10  
06A  C11  C11  C  0  1  N  N  N  -33.256  44.909  -12.801  -2.401  -1.581   0.307  C11  06A  11  
06A  C12  C12  C  0  1  N  N  N  -32.937  43.031  -14.547  -4.889  -0.777   0.304  C12  06A  12  
06A  C13  C13  C  0  1  N  N  N  -31.466  43.134  -15.012  -4.852   0.743   0.201  C13  06A  13  
06A  C14  C14  C  0  1  N  N  N  -31.264  44.221  -13.934  -3.592   0.625   1.049  C14  06A  14  
06A  C15  C15  C  0  1  N  N  N  -31.090  43.396  -16.484  -6.034   1.612   0.623  C15  06A  15  
06A  C16  C16  C  0  1  N  N  N  -30.049  42.257  -16.452  -6.346   1.758  -0.878  C16  06A  16  
06A  C17  C17  C  0  1  N  N  N  -30.537  41.904  -15.039  -4.858   1.464  -1.144  C17  06A  17  
06A  C18  C18  C  0  1  N  N  N  -33.076  47.234  -12.034  -0.927  -0.849   2.162  C18  06A  18  
06A  N1   N1   N  0  1  N  N  N  -30.262  44.504  -10.393   1.654  -0.712   0.132  N1   06A  19  
06A  N2   N2   N  0  1  Y  N  N  -27.324  43.423   -8.677   4.949   0.512  -0.467  N2   06A  20  
06A  O1   O1   O  0  1  N  N  N  -34.437  45.122  -12.985  -2.601  -2.678  -0.168  O1   06A  21  
06A  F    F1   F  0  1  N  N  N  -30.396  41.209  -17.334  -7.208   0.772  -1.369  F    06A  22  
06A  N5   N3   N  0  1  N  N  N  -32.606  43.921  -13.433  -3.431  -0.737   0.514  N5   06A  23  
06A  N4   N4   N  0  1  N  N  N  -32.388  45.455  -10.504  -0.067  -2.244   0.347  N4   06A  24  
06A  N    N5   N  0  1  N  N  N  -31.649  44.659   -8.470   2.100  -2.988  -0.203  N    06A  25  
06A  N3   N6   N  0  1  Y  N  N  -28.034  43.734   -9.805   3.615   0.788  -0.145  N3   06A  26  
06A  C    C19  C  0  1  N  N  N  -30.734  44.187   -7.551   3.403  -2.741  -0.465  C    06A  27  
06A  O    O2   O  0  1  N  N  N  -31.032  44.036   -6.366   4.171  -3.650  -0.729  O    06A  28  
06A  H1   H1   H  0  1  N  N  N  -27.945  43.318   -6.654   6.023  -1.272  -0.890  H1   06A  29  
06A  H2   H2   H  0  1  N  N  N  -26.442  42.919  -10.878   1.987   2.034   0.331  H2   06A  30  
06A  H3   H3   H  0  1  N  N  N  -29.122  43.348  -12.237   3.066   3.009   2.094  H3   06A  31  
06A  H4   H4   H  0  1  N  N  N  -28.150  41.847  -12.077   4.550   2.101   1.686  H4   06A  32  
06A  H5   H5   H  0  1  N  N  N  -28.008  43.642  -14.224   4.361   4.860   1.510  H5   06A  33  
06A  H6   H6   H  0  1  N  N  N  -26.739  42.450  -13.783   5.460   3.887   0.483  H6   06A  34  
06A  H7   H7   H  0  1  N  N  N  -25.322  44.135  -13.062   2.649   4.920  -0.187  H7   06A  35  
06A  H8   H8   H  0  1  N  N  N  -26.495  45.323  -13.725   4.145   5.042  -1.171  H8   06A  36  
06A  H9   H9   H  0  1  N  N  N  -25.879  45.215  -11.080   4.130   2.689  -1.686  H9   06A  37  
06A  H10  H10  H  0  1  N  N  N  -27.521  45.655  -11.661   2.382   3.077  -1.720  H10  06A  38  
06A  H11  H11  H  0  1  N  N  N  -31.426  45.903  -12.303  -0.730  -0.270   0.096  H11  06A  39  
06A  H12  H12  H  0  1  N  N  N  -33.669  43.444  -15.257  -5.443  -1.141   1.168  H12  06A  40  
06A  H13  H13  H  0  1  N  N  N  -33.249  42.020  -14.245  -5.181  -1.269  -0.624  H13  06A  41  
06A  H14  H14  H  0  1  N  N  N  -30.454  44.009  -13.220  -2.798   1.308   0.746  H14  06A  42  
06A  H15  H15  H  0  1  N  N  N  -31.144  45.239  -14.332  -3.785   0.651   2.122  H15  06A  43  
06A  H16  H16  H  0  1  N  N  N  -30.655  44.391  -16.662  -6.799   1.070   1.178  H16  06A  44  
06A  H17  H17  H  0  1  N  N  N  -31.915  43.225  -17.191  -5.741   2.546   1.103  H17  06A  45  
06A  H18  H18  H  0  1  N  N  N  -29.006  42.604  -16.493  -6.649   2.766  -1.164  H18  06A  46  
06A  H19  H19  H  0  1  N  N  N  -31.070  40.944  -14.981  -4.232   2.356  -1.165  H19  06A  47  
06A  H20  H20  H  0  1  N  N  N  -29.744  41.930  -14.277  -4.688   0.804  -1.995  H20  06A  48  
06A  H21  H21  H  0  1  N  N  N  -32.526  47.947  -11.403  -1.196  -1.738   2.731  H21  06A  49  
06A  H22  H22  H  0  1  N  N  N  -33.028  47.561  -13.083   0.087  -0.544   2.422  H22  06A  50  
06A  H23  H23  H  0  1  N  N  N  -34.126  47.193  -11.710  -1.621  -0.042   2.399  H23  06A  51  
06A  H24  H24  H  0  1  N  N  N  -33.204  45.678   -9.970  -0.381  -3.161   0.317  H24  06A  52  
06A  H25  H25  H  0  1  N  N  N  -32.562  44.893   -8.136   1.768  -3.899  -0.225  H25  06A  53  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
06A  F    C16  SING  N  N   1  
06A  C15  C16  SING  N  N   2  
06A  C15  C13  SING  N  N   3  
06A  C16  C17  SING  N  N   4  
06A  C17  C13  SING  N  N   5  
06A  C13  C12  SING  N  N   6  
06A  C13  C14  SING  N  N   7  
06A  C12  N5   SING  N  N   8  
06A  C14  N5   SING  N  N   9  
06A  N5   C11  SING  N  N  10  
06A  C7   C8   SING  N  N  11  
06A  C7   C6   SING  N  N  12  
06A  C8   C9   SING  N  N  13  
06A  O1   C11  DOUB  N  N  14  
06A  C11  C10  SING  N  N  15  
06A  C6   C5   SING  N  N  16  
06A  C18  C10  SING  N  N  17  
06A  C10  N4   SING  N  N  18  
06A  C9   C5   SING  N  N  19  
06A  C5   N3   SING  N  N  20  
06A  N4   C1   SING  N  N  21  
06A  N1   C1   DOUB  N  N  22  
06A  N1   C2   SING  N  N  23  
06A  N3   C2   SING  Y  N  24  
06A  N3   N2   SING  Y  N  25  
06A  C1   N    SING  N  N  26  
06A  C2   C3   DOUB  Y  N  27  
06A  N2   C4   DOUB  Y  N  28  
06A  N    C    SING  N  N  29  
06A  C3   C4   SING  Y  N  30  
06A  C3   C    SING  N  N  31  
06A  C    O    DOUB  N  N  32  
06A  C4   H1   SING  N  N  33  
06A  C5   H2   SING  N  N  34  
06A  C6   H3   SING  N  N  35  
06A  C6   H4   SING  N  N  36  
06A  C7   H5   SING  N  N  37  
06A  C7   H6   SING  N  N  38  
06A  C8   H7   SING  N  N  39  
06A  C8   H8   SING  N  N  40  
06A  C9   H9   SING  N  N  41  
06A  C9   H10  SING  N  N  42  
06A  C10  H11  SING  N  N  43  
06A  C12  H12  SING  N  N  44  
06A  C12  H13  SING  N  N  45  
06A  C14  H14  SING  N  N  46  
06A  C14  H15  SING  N  N  47  
06A  C15  H16  SING  N  N  48  
06A  C15  H17  SING  N  N  49  
06A  C16  H18  SING  N  N  50  
06A  C17  H19  SING  N  N  51  
06A  C17  H20  SING  N  N  52  
06A  C18  H21  SING  N  N  53  
06A  C18  H22  SING  N  N  54  
06A  C18  H23  SING  N  N  55  
06A  N4   H24  SING  N  N  56  
06A  N    H25  SING  N  N  57  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
06A  InChI             InChI                 1.03   "InChI=1S/C19H25FN6O2/c1-11(17(28)25-9-19(10-25)6-12(20)7-19)22-18-23-15-14(16(27)24-18)8-21-26(15)13-4-2-3-5-13/h8,11-13H,2-7,9-10H2,1H3,(H2,22,23,24,27)/t11-/m1/s1"  
06A  InChIKey          InChI                 1.03   GJXGHHNPNGRGBH-LLVKDONJSA-N  
06A  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H](NC1=Nc2n(ncc2C(=O)N1)C3CCCC3)C(=O)N4CC5(CC(F)C5)C4"  
06A  SMILES            CACTVS                3.385  "C[CH](NC1=Nc2n(ncc2C(=O)N1)C3CCCC3)C(=O)N4CC5(CC(F)C5)C4"  
06A  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@H](C(=O)N1CC2(C1)CC(C2)F)NC3=Nc4c(cnn4C5CCCC5)C(=O)N3"  
06A  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C(=O)N1CC2(C1)CC(C2)F)NC3=Nc4c(cnn4C5CCCC5)C(=O)N3"  
#
_pdbx_chem_comp_identifier.comp_id          06A
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "1-cyclopentyl-6-[[(2~{R})-1-(6-fluoranyl-2-azaspiro[3.3]heptan-2-yl)-1-oxidanylidene-propan-2-yl]amino]-5~{H}-pyrazolo[3,4-d]pyrimidin-4-one"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
06A  "Create component"  2021-06-07  PDBJ  
06A  "Initial release"   2022-04-13  RCSB  
##
