data_ZG9
# 
_chem_comp.id                                    ZG9 
_chem_comp.name                                  "[(2S)-1,4-dioxan-2-yl]methyl 2-acetamido-2-deoxy-6-O-methyl-beta-D-glucopyranoside" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H25 N O8" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-03-09 
_chem_comp.pdbx_modified_date                    2023-05-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        335.350 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ZG9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8GFB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ZG9 C1  C1  C 0 1 N N N -15.750 -37.622 -65.274 -3.374 4.571  0.258  C1  ZG9 1  
ZG9 O1  O1  O 0 1 N N N -15.993 -36.663 -64.224 -2.798 3.356  -0.225 O1  ZG9 2  
ZG9 C2  C2  C 0 1 N N N -16.767 -35.530 -64.614 -3.398 2.175  0.313  C2  ZG9 3  
ZG9 C3  C3  C 0 1 N N R -16.479 -34.364 -63.705 -2.707 0.941  -0.270 C3  ZG9 4  
ZG9 O2  O2  O 0 1 N N N -15.088 -34.079 -63.888 -1.347 0.906  0.168  O2  ZG9 5  
ZG9 C4  C4  C 0 1 N N R -14.623 -33.035 -63.041 -0.599 -0.200 -0.343 C4  ZG9 6  
ZG9 O3  O3  O 0 1 N N N -13.273 -32.961 -63.352 0.747  -0.124 0.132  O3  ZG9 7  
ZG9 C5  C5  C 0 1 N N N -12.360 -33.691 -62.486 1.471  1.010  -0.349 C5  ZG9 8  
ZG9 C6  C6  C 0 1 N N S -11.423 -32.645 -61.960 2.890  0.989  0.221  C6  ZG9 9  
ZG9 C7  C7  C 0 1 N N N -10.059 -32.499 -62.488 3.630  2.263  -0.200 C7  ZG9 10 
ZG9 O4  O4  O 0 1 N N N -9.534  -31.251 -62.036 4.989  2.184  0.241  O4  ZG9 11 
ZG9 C8  C8  C 0 1 N N N -9.544  -31.168 -60.598 5.690  1.045  -0.266 C8  ZG9 12 
ZG9 C9  C9  C 0 1 N N N -10.882 -31.495 -60.016 4.951  -0.229 0.155  C9  ZG9 13 
ZG9 O5  O5  O 0 1 N N N -11.385 -32.720 -60.549 3.592  -0.150 -0.287 O5  ZG9 14 
ZG9 C10 C10 C 0 1 N N R -15.333 -31.696 -63.354 -1.235 -1.508 0.133  C10 ZG9 15 
ZG9 N1  N1  N 0 1 N N N -14.896 -30.554 -62.554 -0.505 -2.643 -0.437 N1  ZG9 16 
ZG9 C11 C11 C 0 1 N N N -14.247 -29.471 -63.022 0.597  -3.114 0.179  C11 ZG9 17 
ZG9 C12 C12 C 0 1 N N N -13.821 -28.436 -62.027 1.348  -4.281 -0.407 C12 ZG9 18 
ZG9 O6  O6  O 0 1 N N N -14.068 -29.307 -64.223 0.984  -2.598 1.206  O6  ZG9 19 
ZG9 C13 C13 C 0 1 N N R -16.841 -31.906 -63.204 -2.695 -1.554 -0.330 C13 ZG9 20 
ZG9 O7  O7  O 0 1 N N N -17.569 -30.715 -63.516 -3.318 -2.739 0.170  O7  ZG9 21 
ZG9 C14 C14 C 0 1 N N S -17.306 -33.115 -64.032 -3.429 -0.322 0.208  C14 ZG9 22 
ZG9 O8  O8  O 0 1 N N N -18.665 -33.432 -63.736 -4.773 -0.316 -0.277 O8  ZG9 23 
ZG9 H1  H1  H 0 1 N N N -15.149 -38.454 -64.879 -2.863 5.420  -0.197 H1  ZG9 24 
ZG9 H2  H2  H 0 1 N N N -16.710 -38.008 -65.647 -4.432 4.601  -0.003 H2  ZG9 25 
ZG9 H3  H3  H 0 1 N N N -15.206 -37.135 -66.097 -3.265 4.620  1.341  H3  ZG9 26 
ZG9 H4  H4  H 0 1 N N N -16.513 -35.255 -65.648 -3.290 2.174  1.397  H4  ZG9 27 
ZG9 H5  H5  H 0 1 N N N -17.836 -35.782 -64.553 -4.457 2.155  0.053  H5  ZG9 28 
ZG9 H6  H6  H 0 1 N N N -16.675 -34.659 -62.663 -2.738 0.987  -1.359 H6  ZG9 29 
ZG9 H7  H7  H 0 1 N N N -14.780 -33.288 -61.982 -0.601 -0.169 -1.432 H7  ZG9 30 
ZG9 H8  H8  H 0 1 N N N -12.907 -34.172 -61.662 1.515  0.977  -1.438 H8  ZG9 31 
ZG9 H9  H9  H 0 1 N N N -11.810 -34.454 -63.056 0.966  1.924  -0.034 H9  ZG9 32 
ZG9 H10 H10 H 0 1 N N N -11.918 -31.690 -62.190 2.846  0.935  1.308  H10 ZG9 33 
ZG9 H11 H11 H 0 1 N N N -10.082 -32.516 -63.588 3.604  2.357  -1.285 H11 ZG9 34 
ZG9 H12 H12 H 0 1 N N N -9.428  -33.322 -62.121 3.149  3.129  0.254  H12 ZG9 35 
ZG9 H13 H13 H 0 1 N N N -8.803  -31.876 -60.198 5.734  1.099  -1.354 H13 ZG9 36 
ZG9 H14 H14 H 0 1 N N N -9.271  -30.145 -60.302 6.702  1.030  0.140  H14 ZG9 37 
ZG9 H15 H15 H 0 1 N N N -10.786 -31.590 -58.924 5.431  -1.095 -0.299 H15 ZG9 38 
ZG9 H16 H16 H 0 1 N N N -11.586 -30.683 -60.253 4.977  -0.324 1.240  H16 ZG9 39 
ZG9 H17 H17 H 0 1 N N N -15.139 -31.467 -64.412 -1.196 -1.558 1.221  H17 ZG9 40 
ZG9 H18 H18 H 0 1 N N N -15.096 -30.579 -61.575 -0.815 -3.056 -1.258 H18 ZG9 41 
ZG9 H19 H19 H 0 1 N N N -13.361 -27.587 -62.554 0.854  -4.608 -1.322 H19 ZG9 42 
ZG9 H20 H20 H 0 1 N N N -14.699 -28.086 -61.464 2.370  -3.979 -0.633 H20 ZG9 43 
ZG9 H21 H21 H 0 1 N N N -13.090 -28.875 -61.332 1.362  -5.102 0.311  H21 ZG9 44 
ZG9 H22 H22 H 0 1 N N N -17.026 -32.153 -62.148 -2.733 -1.554 -1.419 H22 ZG9 45 
ZG9 H23 H23 H 0 1 N N N -17.248 -29.998 -62.982 -4.246 -2.833 -0.085 H23 ZG9 46 
ZG9 H24 H24 H 0 1 N N N -17.191 -32.880 -65.100 -3.435 -0.347 1.298  H24 ZG9 47 
ZG9 H25 H25 H 0 1 N N N -19.214 -32.681 -63.926 -5.295 0.441  0.021  H25 ZG9 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ZG9 C1  O1  SING N N 1  
ZG9 C2  O1  SING N N 2  
ZG9 C2  C3  SING N N 3  
ZG9 O6  C11 DOUB N N 4  
ZG9 C14 O8  SING N N 5  
ZG9 C14 C3  SING N N 6  
ZG9 C14 C13 SING N N 7  
ZG9 O2  C3  SING N N 8  
ZG9 O2  C4  SING N N 9  
ZG9 O7  C13 SING N N 10 
ZG9 C10 C13 SING N N 11 
ZG9 C10 C4  SING N N 12 
ZG9 C10 N1  SING N N 13 
ZG9 O3  C4  SING N N 14 
ZG9 O3  C5  SING N N 15 
ZG9 C11 N1  SING N N 16 
ZG9 C11 C12 SING N N 17 
ZG9 C7  O4  SING N N 18 
ZG9 C7  C6  SING N N 19 
ZG9 C5  C6  SING N N 20 
ZG9 O4  C8  SING N N 21 
ZG9 C6  O5  SING N N 22 
ZG9 C8  C9  SING N N 23 
ZG9 O5  C9  SING N N 24 
ZG9 C1  H1  SING N N 25 
ZG9 C1  H2  SING N N 26 
ZG9 C1  H3  SING N N 27 
ZG9 C2  H4  SING N N 28 
ZG9 C2  H5  SING N N 29 
ZG9 C3  H6  SING N N 30 
ZG9 C4  H7  SING N N 31 
ZG9 C5  H8  SING N N 32 
ZG9 C5  H9  SING N N 33 
ZG9 C6  H10 SING N N 34 
ZG9 C7  H11 SING N N 35 
ZG9 C7  H12 SING N N 36 
ZG9 C8  H13 SING N N 37 
ZG9 C8  H14 SING N N 38 
ZG9 C9  H15 SING N N 39 
ZG9 C9  H16 SING N N 40 
ZG9 C10 H17 SING N N 41 
ZG9 N1  H18 SING N N 42 
ZG9 C12 H19 SING N N 43 
ZG9 C12 H20 SING N N 44 
ZG9 C12 H21 SING N N 45 
ZG9 C13 H22 SING N N 46 
ZG9 O7  H23 SING N N 47 
ZG9 C14 H24 SING N N 48 
ZG9 O8  H25 SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ZG9 SMILES           ACDLabs              12.01 "CC(=O)NC1C(O)C(O)C(COC)OC1OCC1COCCO1"                                                                                                                  
ZG9 InChI            InChI                1.06  "InChI=1S/C14H25NO8/c1-8(16)15-11-13(18)12(17)10(7-19-2)23-14(11)22-6-9-5-20-3-4-21-9/h9-14,17-18H,3-7H2,1-2H3,(H,15,16)/t9-,10+,11+,12+,13+,14+/m0/s1" 
ZG9 InChIKey         InChI                1.06  OSYFGNJAUIHPSL-YHBOFVJASA-N                                                                                                                             
ZG9 SMILES_CANONICAL CACTVS               3.385 "COC[C@H]1O[C@@H](OC[C@@H]2COCCO2)[C@H](NC(C)=O)[C@@H](O)[C@@H]1O"                                                                                      
ZG9 SMILES           CACTVS               3.385 "COC[CH]1O[CH](OC[CH]2COCCO2)[CH](NC(C)=O)[CH](O)[CH]1O"                                                                                                
ZG9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1OC[C@@H]2COCCO2)COC)O)O"                                                                                       
ZG9 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)NC1C(C(C(OC1OCC2COCCO2)COC)O)O"                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ZG9 "SYSTEMATIC NAME" ACDLabs              12.01 "[(2S)-1,4-dioxan-2-yl]methyl 2-acetamido-2-deoxy-6-O-methyl-beta-D-glucopyranoside"                                                 
ZG9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(2~{R},3~{R},4~{R},5~{S},6~{R})-2-[[(2~{S})-1,4-dioxan-2-yl]methoxy]-6-(methoxymethyl)-4,5-bis(oxidanyl)oxan-3-yl]ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ZG9 "Create component" 2023-03-09 RCSB 
ZG9 "Initial release"  2023-05-24 RCSB 
# 
