data_YY9
# 
_chem_comp.id                                    YY9 
_chem_comp.name                                  "3-(2,6-dichloro-3,5-dimethoxyphenyl)-1-{1-[4-(dimethylamino)but-2-enoyl]piperidin-4-yl}-7-(phenylamino)-3,4-dihydropyrimido[4,5-d]pyrimidin-2(1H)-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C31 H35 Cl2 N7 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-02-09 
_chem_comp.pdbx_modified_date                    2017-05-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        640.560 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YY9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5UR1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YY9 CAI C1  C  0 1 N N N -41.495 10.837 27.978 0.596  7.301  -1.953 CAI YY9 1  
YY9 OAH O1  O  0 1 N N N -42.608 11.546 28.567 0.072  5.979  -2.096 OAH YY9 2  
YY9 CAE C2  C  0 1 Y N N -42.784 11.428 29.913 -0.017 5.226  -0.968 CAE YY9 3  
YY9 CAD C3  C  0 1 Y N N -43.869 12.103 30.420 -0.517 3.934  -1.035 CAD YY9 4  
YY9 CLL CL1 CL 0 0 N N N -44.915 12.937 29.388 -1.028 3.279  -2.559 CLL YY9 5  
YY9 CAF C4  C  0 1 Y N N -41.963 10.732 30.768 0.396  5.748  0.249  CAF YY9 6  
YY9 CAA C5  C  0 1 Y N N -42.248 10.728 32.146 0.306  4.980  1.400  CAA YY9 7  
YY9 OAG O2  O  0 1 N N N -41.492 10.068 33.064 0.712  5.492  2.592  OAG YY9 8  
YY9 CAJ C6  C  0 1 N N N -40.401 9.283  32.565 1.220  6.828  2.585  CAJ YY9 9  
YY9 CAB C7  C  0 1 Y N N -43.357 11.392 32.673 -0.198 3.689  1.336  CAB YY9 10 
YY9 CLK CL2 CL 0 0 N N N -43.567 11.259 34.429 -0.311 2.728  2.777  CLK YY9 11 
YY9 CAC C8  C  0 1 Y N N -44.193 12.088 31.768 -0.608 3.164  0.117  CAC YY9 12 
YY9 NAM N1  N  0 1 N N N -45.381 12.895 32.139 -1.112 1.860  0.051  NAM YY9 13 
YY9 CAR C9  C  0 1 N N N -46.547 12.332 32.515 -0.287 0.820  -0.167 CAR YY9 14 
YY9 OAW O3  O  0 1 N N N -46.649 11.139 32.265 0.901  1.043  -0.304 OAW YY9 15 
YY9 CAN C10 C  0 1 N N N -44.927 14.091 32.922 -2.554 1.605  0.224  CAN YY9 16 
YY9 C5  C11 C  0 1 Y N N -46.051 14.991 33.225 -3.003 0.168  0.136  C5  YY9 17 
YY9 C6  C12 C  0 1 Y N N -45.843 16.344 33.415 -4.319 -0.199 0.280  C6  YY9 18 
YY9 N1  N2  N  0 1 Y N N -46.913 17.162 33.743 -4.634 -1.486 0.189  N1  YY9 19 
YY9 C2  C13 C  0 1 Y N N -48.136 16.630 33.846 -3.701 -2.399 -0.036 C2  YY9 20 
YY9 NAX N3  N  0 1 N N N -49.216 17.570 34.190 -4.073 -3.731 -0.124 NAX YY9 21 
YY9 CAY C14 C  0 1 Y N N -50.645 17.154 34.225 -5.401 -4.102 0.106  CAY YY9 22 
YY9 CAZ C15 C  0 1 Y N N -51.174 16.160 33.391 -6.437 -3.269 -0.296 CAZ YY9 23 
YY9 CBA C16 C  0 1 Y N N -52.531 15.843 33.473 -7.747 -3.639 -0.067 CBA YY9 24 
YY9 CBB C17 C  0 1 Y N N -53.356 16.497 34.377 -8.029 -4.837 0.563  CBB YY9 25 
YY9 CBC C18 C  0 1 Y N N -52.841 17.485 35.195 -7.000 -5.669 0.966  CBC YY9 26 
YY9 CBD C19 C  0 1 Y N N -51.498 17.809 35.112 -5.687 -5.308 0.734  CBD YY9 27 
YY9 N3  N4  N  0 1 Y N N -48.322 15.302 33.661 -2.422 -2.079 -0.180 N3  YY9 28 
YY9 C4  C20 C  0 1 Y N N -47.315 14.480 33.337 -2.037 -0.812 -0.100 C4  YY9 29 
YY9 NAQ N5  N  0 1 N N N -47.533 13.017 33.171 -0.708 -0.449 -0.241 NAQ YY9 30 
YY9 CBE C21 C  0 1 N N N -49.002 12.761 32.935 0.281  -1.502 -0.482 CBE YY9 31 
YY9 CBJ C22 C  0 1 N N N -49.511 11.831 34.022 1.315  -1.499 0.646  CBJ YY9 32 
YY9 CBI C23 C  0 1 N N N -50.971 12.125 34.201 2.328  -2.623 0.409  CBI YY9 33 
YY9 CBF C24 C  0 1 N N N -49.476 12.233 31.593 0.982  -1.247 -1.819 CBF YY9 34 
YY9 CBG C25 C  0 1 N N N -50.959 11.867 31.619 1.992  -2.368 -2.084 CBG YY9 35 
YY9 NBH N6  N  0 1 N N N -51.698 12.204 32.894 2.902  -2.467 -0.934 NBH YY9 36 
YY9 CBK C26 C  0 1 N N N -53.027 12.567 32.957 4.237  -2.415 -1.109 CBK YY9 37 
YY9 OBL O4  O  0 1 N N N -53.601 12.839 34.024 4.698  -2.182 -2.210 OBL YY9 38 
YY9 CBM C27 C  0 1 N N N -53.877 12.665 31.659 5.137  -2.639 0.032  CBM YY9 39 
YY9 CBN C28 C  0 1 N N N -55.360 13.102 31.789 6.453  -2.685 -0.158 CBN YY9 40 
YY9 H1  H1  H  0 1 N N N -41.475 11.021 26.894 1.610  7.249  -1.554 H1  YY9 41 
YY9 H2  H2  H  0 1 N N N -40.556 11.191 28.428 0.614  7.792  -2.926 H2  YY9 42 
YY9 H3  H3  H  0 1 N N N -41.607 9.759  28.165 -0.034 7.870  -1.270 H3  YY9 43 
YY9 H4  H4  H  0 1 N N N -41.108 10.194 30.386 0.789  6.752  0.300  H4  YY9 44 
YY9 H5  H5  H  0 1 N N N -39.877 8.806  33.406 2.091  6.881  1.931  H5  YY9 45 
YY9 H6  H6  H  0 1 N N N -40.787 8.507  31.887 0.450  7.508  2.221  H6  YY9 46 
YY9 H7  H7  H  0 1 N N N -39.702 9.933  32.018 1.507  7.113  3.597  H7  YY9 47 
YY9 H8  H8  H  0 1 N N N -44.476 13.751 33.866 -2.849 1.992  1.199  H8  YY9 48 
YY9 H9  H9  H  0 1 N N N -44.177 14.640 32.334 -3.090 2.173  -0.536 H9  YY9 49 
YY9 H10 H10 H  0 1 N N N -44.853 16.762 33.309 -5.081 0.543  0.463  H10 YY9 50 
YY9 H11 H11 H  0 1 N N N -48.982 18.518 34.407 -3.412 -4.405 -0.346 H11 YY9 51 
YY9 H12 H12 H  0 1 N N N -50.536 15.643 32.690 -6.217 -2.333 -0.788 H12 YY9 52 
YY9 H13 H13 H  0 1 N N N -52.943 15.082 32.827 -8.553 -2.992 -0.380 H13 YY9 53 
YY9 H14 H14 H  0 1 N N N -54.401 16.234 34.441 -9.054 -5.124 0.742  H14 YY9 54 
YY9 H15 H15 H  0 1 N N N -53.482 18.001 35.894 -7.223 -6.604 1.458  H15 YY9 55 
YY9 H16 H16 H  0 1 N N N -51.102 18.586 35.749 -4.884 -5.960 1.044  H16 YY9 56 
YY9 H17 H17 H  0 1 N N N -49.513 13.723 33.087 -0.219 -2.470 -0.514 H17 YY9 57 
YY9 H18 H18 H  0 1 N N N -49.371 10.783 33.719 1.832  -0.540 0.663  H18 YY9 58 
YY9 H19 H19 H  0 1 N N N -48.970 12.016 34.962 0.812  -1.658 1.600  H19 YY9 59 
YY9 H20 H20 H  0 1 N N N -51.077 13.087 34.724 3.121  -2.563 1.154  H20 YY9 60 
YY9 H21 H21 H  0 1 N N N -51.421 11.326 34.809 1.827  -3.588 0.485  H21 YY9 61 
YY9 H22 H22 H  0 1 N N N -48.892 11.336 31.337 0.243  -1.226 -2.619 H22 YY9 62 
YY9 H23 H23 H  0 1 N N N -49.314 13.007 30.828 1.503  -0.290 -1.779 H23 YY9 63 
YY9 H24 H24 H  0 1 N N N -51.452 12.399 30.792 1.463  -3.312 -2.214 H24 YY9 64 
YY9 H25 H25 H  0 1 N N N -51.042 10.782 31.458 2.563  -2.140 -2.984 H25 YY9 65 
YY9 H26 H26 H  0 1 N N N -53.448 12.436 30.695 4.730  -2.766 1.025  H26 YY9 66 
YY9 H28 H28 H  0 1 N N N -56.358 13.369 32.105 6.860  -2.559 -1.150 H28 YY9 67 
YY9 C1  C29 C  0 1 N N N ?       ?      ?      7.375  -2.915 1.012  C1  YY9 68 
YY9 N2  N7  N  0 1 N N N ?       ?      ?      8.238  -4.072 0.735  N2  YY9 69 
YY9 C7  C30 C  0 1 N N N ?       ?      ?      9.151  -3.793 -0.381 C7  YY9 70 
YY9 C8  C31 C  0 1 N N N ?       ?      ?      8.982  -4.473 1.937  C8  YY9 71 
YY9 H27 H27 H  0 1 N N N ?       ?      ?      7.993  -2.030 1.167  H27 YY9 72 
YY9 H29 H29 H  0 1 N N N ?       ?      ?      6.785  -3.108 1.908  H29 YY9 73 
YY9 H30 H30 H  0 1 N N N ?       ?      ?      9.781  -2.939 -0.130 H30 YY9 74 
YY9 H31 H31 H  0 1 N N N ?       ?      ?      9.778  -4.666 -0.564 H31 YY9 75 
YY9 H32 H32 H  0 1 N N N ?       ?      ?      8.572  -3.567 -1.276 H32 YY9 76 
YY9 H33 H33 H  0 1 N N N ?       ?      ?      8.280  -4.741 2.726  H33 YY9 77 
YY9 H34 H34 H  0 1 N N N ?       ?      ?      9.612  -5.331 1.704  H34 YY9 78 
YY9 H35 H35 H  0 1 N N N ?       ?      ?      9.605  -3.644 2.271  H35 YY9 79 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YY9 CAI OAH SING N N 1  
YY9 OAH CAE SING N N 2  
YY9 CLL CAD SING N N 3  
YY9 CAE CAD DOUB Y N 4  
YY9 CAE CAF SING Y N 5  
YY9 CAD CAC SING Y N 6  
YY9 CAF CAA DOUB Y N 7  
YY9 CBF CBG SING N N 8  
YY9 CBF CBE SING N N 9  
YY9 CBG NBH SING N N 10 
YY9 CBM CBN DOUB N Z 11 
YY9 CBM CBK SING N N 12 
YY9 CAC NAM SING N N 13 
YY9 CAC CAB DOUB Y N 14 
YY9 NAM CAR SING N N 15 
YY9 NAM CAN SING N N 16 
YY9 CAA CAB SING Y N 17 
YY9 CAA OAG SING N N 18 
YY9 OAW CAR DOUB N N 19 
YY9 CAR NAQ SING N N 20 
YY9 CAJ OAG SING N N 21 
YY9 CAB CLK SING N N 22 
YY9 NBH CBK SING N N 23 
YY9 NBH CBI SING N N 24 
YY9 CAN C5  SING N N 25 
YY9 CBE NAQ SING N N 26 
YY9 CBE CBJ SING N N 27 
YY9 CBK OBL DOUB N N 28 
YY9 NAQ C4  SING N N 29 
YY9 C5  C4  DOUB Y N 30 
YY9 C5  C6  SING Y N 31 
YY9 C4  N3  SING Y N 32 
YY9 CAZ CBA DOUB Y N 33 
YY9 CAZ CAY SING Y N 34 
YY9 C6  N1  DOUB Y N 35 
YY9 CBA CBB SING Y N 36 
YY9 N3  C2  DOUB Y N 37 
YY9 N1  C2  SING Y N 38 
YY9 C2  NAX SING N N 39 
YY9 CBJ CBI SING N N 40 
YY9 NAX CAY SING N N 41 
YY9 CAY CBD DOUB Y N 42 
YY9 CBB CBC DOUB Y N 43 
YY9 CBD CBC SING Y N 44 
YY9 CAI H1  SING N N 45 
YY9 CAI H2  SING N N 46 
YY9 CAI H3  SING N N 47 
YY9 CAF H4  SING N N 48 
YY9 CAJ H5  SING N N 49 
YY9 CAJ H6  SING N N 50 
YY9 CAJ H7  SING N N 51 
YY9 CAN H8  SING N N 52 
YY9 CAN H9  SING N N 53 
YY9 C6  H10 SING N N 54 
YY9 NAX H11 SING N N 55 
YY9 CAZ H12 SING N N 56 
YY9 CBA H13 SING N N 57 
YY9 CBB H14 SING N N 58 
YY9 CBC H15 SING N N 59 
YY9 CBD H16 SING N N 60 
YY9 CBE H17 SING N N 61 
YY9 CBJ H18 SING N N 62 
YY9 CBJ H19 SING N N 63 
YY9 CBI H20 SING N N 64 
YY9 CBI H21 SING N N 65 
YY9 CBF H22 SING N N 66 
YY9 CBF H23 SING N N 67 
YY9 CBG H24 SING N N 68 
YY9 CBG H25 SING N N 69 
YY9 CBM H26 SING N N 70 
YY9 CBN H28 SING N N 71 
YY9 CBN C1  SING N N 72 
YY9 C1  N2  SING N N 73 
YY9 N2  C7  SING N N 74 
YY9 N2  C8  SING N N 75 
YY9 C1  H27 SING N N 76 
YY9 C1  H29 SING N N 77 
YY9 C7  H30 SING N N 78 
YY9 C7  H31 SING N N 79 
YY9 C7  H32 SING N N 80 
YY9 C8  H33 SING N N 81 
YY9 C8  H34 SING N N 82 
YY9 C8  H35 SING N N 83 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YY9 SMILES           ACDLabs              12.01 "COc1c(c(c(c(c1)OC)Cl)N2C(N(c4c(C2)cnc(Nc3ccccc3)n4)C5CCN(CC5)C(=O)C=[C@H]CN(C)C)=O)Cl" 
YY9 InChI            InChI                1.03  
"InChI=1S/C31H35Cl2N7O4/c1-37(2)14-8-11-25(41)38-15-12-22(13-16-38)40-29-20(18-34-30(36-29)35-21-9-6-5-7-10-21)19-39(31(40)42)28-26(32)23(43-3)17-24(44-4)27(28)33/h5-11,17-18,22H,12-16,19H2,1-4H3,(H,34,35,36)" 
YY9 InChIKey         InChI                1.03  YHIGPAIFBVOPKV-UHFFFAOYSA-N 
YY9 SMILES_CANONICAL CACTVS               3.385 "COc1cc(OC)c(Cl)c(N2Cc3cnc(Nc4ccccc4)nc3N(C5CCN(CC5)C(=O)\C=C/CN(C)C)C2=O)c1Cl" 
YY9 SMILES           CACTVS               3.385 "COc1cc(OC)c(Cl)c(N2Cc3cnc(Nc4ccccc4)nc3N(C5CCN(CC5)C(=O)C=CCN(C)C)C2=O)c1Cl" 
YY9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CN(C)C/C=C/C(=O)N1CCC(CC1)N2c3c(cnc(n3)Nc4ccccc4)CN(C2=O)c5c(c(cc(c5Cl)OC)OC)Cl" 
YY9 SMILES           "OpenEye OEToolkits" 2.0.6 "CN(C)CC=CC(=O)N1CCC(CC1)N2c3c(cnc(n3)Nc4ccccc4)CN(C2=O)c5c(c(cc(c5Cl)OC)OC)Cl" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YY9 "SYSTEMATIC NAME" ACDLabs              12.01 "3-(2,6-dichloro-3,5-dimethoxyphenyl)-1-{1-[4-(dimethylamino)but-2-enoyl]piperidin-4-yl}-7-(phenylamino)-3,4-dihydropyrimido[4,5-d]pyrimidin-2(1H)-one"     
YY9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "3-[2,6-bis(chloranyl)-3,5-dimethoxy-phenyl]-1-[1-[(~{E})-4-(dimethylamino)but-2-enoyl]piperidin-4-yl]-7-phenylazanyl-4~{H}-pyrimido[4,5-d]pyrimidin-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YY9 "Create component" 2017-02-09 RCSB 
YY9 "Initial release"  2017-05-31 RCSB 
# 
