data_YM9
# 
_chem_comp.id                                    YM9 
_chem_comp.name                                  "(5M)-5-(2-chloro-5-fluoro-4-methylphenyl)-1H-benzimidazole-7-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H10 Cl F N2 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-09 
_chem_comp.pdbx_modified_date                    2024-02-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        304.704 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YM9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7FU2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YM9 C10  C1  C  0 1 Y N N N N N 8.934  -16.433 -17.693 -0.879 -0.665 -0.403 C10  YM9 1  
YM9 C11  C2  C  0 1 N N N N N N 10.314 -18.273 -18.709 -3.128 -1.631 -0.832 C11  YM9 2  
YM9 O12  O1  O  0 1 N N N N N N 11.070 -18.233 -17.702 -2.579 -2.791 -1.243 O12  YM9 3  
YM9 C17  C3  C  0 1 Y N N N N N 8.233  -17.295 -19.828 -2.833 0.689  0.034  C17  YM9 4  
YM9 C18  C4  C  0 1 Y N N N N N 7.153  -16.408 -19.839 -2.005 1.745  0.452  C18  YM9 5  
YM9 C20  C5  C  0 1 Y N N N N N 7.067  -17.598 -21.636 -4.063 2.415  0.643  C20  YM9 6  
YM9 C1   C6  C  0 1 Y N N N N N 7.926  -12.291 -15.669 3.375  -1.038 0.557  C1   YM9 7  
YM9 C14  C7  C  0 1 N N N N N N 7.246  -11.717 -13.313 5.665  -0.243 -0.066 C14  YM9 8  
YM9 C2   C8  C  0 1 Y N N N N N 7.413  -12.702 -14.440 4.167  -0.078 -0.047 C2   YM9 9  
YM9 C3   C9  C  0 1 Y N N N N N 7.047  -14.032 -14.334 3.587  1.034  -0.636 C3   YM9 10 
YM9 C4   C10 C  0 1 Y N N N N N 7.167  -14.939 -15.363 2.214  1.190  -0.621 C4   YM9 11 
YM9 C5   C11 C  0 1 Y N N N N N 7.700  -14.541 -16.587 1.413  0.226  -0.013 C5   YM9 12 
YM9 C6   C12 C  0 1 Y N N N N N 8.053  -13.187 -16.718 2.002  -0.892 0.577  C6   YM9 13 
YM9 C7   C13 C  0 1 Y N N N N N 7.848  -15.544 -17.681 -0.062 0.387  0.006  C7   YM9 14 
YM9 C8   C14 C  0 1 Y N N N N N 6.970  -15.522 -18.774 -0.619 1.587  0.432  C8   YM9 15 
YM9 C9   C15 C  0 1 Y N N N N N 9.124  -17.346 -18.742 -2.264 -0.520 -0.394 C9   YM9 16 
YM9 F15  F1  F  0 1 N N N N N N 6.581  -14.474 -13.147 4.366  1.969  -1.224 F15  YM9 17 
YM9 N19  N1  N  0 1 Y N N N N N 6.450  -16.594 -21.036 -2.823 2.770  0.811  N19  YM9 18 
YM9 N21  N2  N  0 1 Y N N N N N 8.144  -18.057 -20.964 -4.124 1.141  0.167  N21  YM9 19 
YM9 O13  O2  O  0 1 N N N N N N 10.503 -19.012 -19.711 -4.336 -1.501 -0.823 O13  YM9 20 
YM9 CL16 CL1 CL 0 0 N N N N N N 8.729  -12.607 -18.201 1.011  -2.098 1.336  CL16 YM9 21 
YM9 H25  H1  H  0 1 N N N N N N 9.640  -16.414 -16.876 -0.437 -1.594 -0.733 H25  YM9 22 
YM9 H1   H2  H  0 1 N N N N N N 11.791 -18.840 -17.822 -3.186 -3.490 -1.521 H1   YM9 23 
YM9 H31  H3  H  0 1 N N N N N N 6.739  -18.013 -22.578 -4.919 3.039  0.852  H31  YM9 24 
YM9 H22  H4  H  0 1 N N N N N N 8.228  -11.263 -15.805 3.832  -1.906 1.010  H22  YM9 25 
YM9 H28  H5  H  0 1 N N N N N N 6.250  -11.253 -13.375 5.959  -0.789 -0.963 H28  YM9 26 
YM9 H29  H6  H  0 1 N N N N N N 7.347  -12.240 -12.351 6.138  0.739  -0.067 H29  YM9 27 
YM9 H27  H7  H  0 1 N N N N N N 8.019  -10.938 -13.390 5.980  -0.798 0.817  H27  YM9 28 
YM9 H23  H8  H  0 1 N N N N N N 6.847  -15.961 -15.221 1.762  2.057  -1.079 H23  YM9 29 
YM9 H24  H9  H  0 1 N N N N N N 6.151  -14.819 -18.793 0.021  2.398  0.747  H24  YM9 30 
YM9 H30  H11 H  0 1 N N N N N N 8.753  -18.801 -21.239 -4.931 0.644  -0.042 H30  YM9 31 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YM9 C1  C6   DOUB Y N 1  
YM9 C1  C2   SING Y N 2  
YM9 C2  C3   DOUB Y N 3  
YM9 C2  C14  SING N N 4  
YM9 C3  F15  SING N N 5  
YM9 C3  C4   SING Y N 6  
YM9 C4  C5   DOUB Y N 7  
YM9 C5  C6   SING Y N 8  
YM9 C5  C7   SING N N 9  
YM9 C6  CL16 SING N N 10 
YM9 C7  C10  DOUB Y N 11 
YM9 C7  C8   SING Y N 12 
YM9 C8  C18  DOUB Y N 13 
YM9 C9  C10  SING Y N 14 
YM9 C9  C11  SING N N 15 
YM9 C9  C17  DOUB Y N 16 
YM9 C11 O12  SING N N 17 
YM9 C11 O13  DOUB N N 18 
YM9 C17 C18  SING Y N 19 
YM9 C17 N21  SING Y N 20 
YM9 C18 N19  SING Y N 21 
YM9 N19 C20  DOUB Y N 22 
YM9 C20 N21  SING Y N 23 
YM9 C10 H25  SING N N 24 
YM9 O12 H1   SING N N 25 
YM9 C20 H31  SING N N 26 
YM9 C1  H22  SING N N 27 
YM9 C14 H28  SING N N 28 
YM9 C14 H29  SING N N 29 
YM9 C14 H27  SING N N 30 
YM9 C4  H23  SING N N 31 
YM9 C8  H24  SING N N 32 
YM9 N21 H30  SING N N 33 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YM9 SMILES           ACDLabs              12.01 "Fc1cc(c2cc3nc[NH]c3c(c2)C(=O)O)c(Cl)cc1C"                                                                          
YM9 InChI            InChI                1.06  "InChI=1S/C15H10ClFN2O2/c1-7-2-11(16)9(5-12(7)17)8-3-10(15(20)21)14-13(4-8)18-6-19-14/h2-6H,1H3,(H,18,19)(H,20,21)" 
YM9 InChIKey         InChI                1.06  DYYWPYAEACAPSR-UHFFFAOYSA-N                                                                                         
YM9 SMILES_CANONICAL CACTVS               3.385 "Cc1cc(Cl)c(cc1F)c2cc3nc[nH]c3c(c2)C(O)=O"                                                                          
YM9 SMILES           CACTVS               3.385 "Cc1cc(Cl)c(cc1F)c2cc3nc[nH]c3c(c2)C(O)=O"                                                                          
YM9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(c(cc1F)c2cc(c3c(c2)nc[nH]3)C(=O)O)Cl"                                                                        
YM9 SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc(c(cc1F)c2cc(c3c(c2)nc[nH]3)C(=O)O)Cl"                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YM9 "SYSTEMATIC NAME" ACDLabs              12.01 "(5M)-5-(2-chloro-5-fluoro-4-methylphenyl)-1H-benzimidazole-7-carboxylic acid"      
YM9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-(2-chloranyl-5-fluoranyl-4-methyl-phenyl)-3~{H}-benzimidazole-4-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YM9 "Create component" 2023-02-09 RCSB 
YM9 "Initial release"  2024-02-21 RCSB 
# 
