data_YI9
# 
_chem_comp.id                                    YI9 
_chem_comp.name                                  "6-(octylamino)pyrimidine-2,4(3H,5H)-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H21 N3 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-03 
_chem_comp.pdbx_modified_date                    2023-10-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        239.314 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YI9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8G05 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YI9 C10 C1  C 0 1 N N N 108.131 128.538 116.185 2.512  0.448  -0.006 C10 YI9 1  
YI9 C15 C2  C 0 1 N N N 106.575 129.932 117.173 4.005  -1.330 -0.000 C15 YI9 2  
YI9 C01 C3  C 0 1 N N N 114.431 123.833 112.052 -8.667 0.126  0.003  C01 YI9 3  
YI9 C02 C4  C 0 1 N N N 115.037 123.572 113.421 -7.349 -0.651 0.003  C02 YI9 4  
YI9 C03 C5  C 0 1 N N N 113.966 123.756 114.481 -6.177 0.332  0.001  C03 YI9 5  
YI9 C04 C6  C 0 1 N N N 113.441 125.182 114.460 -4.859 -0.445 0.001  C04 YI9 6  
YI9 C05 C7  C 0 1 N N N 111.924 125.190 114.395 -3.688 0.539  -0.001 C05 YI9 7  
YI9 C06 C8  C 0 1 N N N 111.422 126.174 113.350 -2.370 -0.239 -0.002 C06 YI9 8  
YI9 C07 C9  C 0 1 N N N 109.973 126.522 113.632 -1.197 0.745  -0.003 C07 YI9 9  
YI9 C08 C10 C 0 1 N N N 109.833 127.157 115.009 0.120  -0.032 -0.004 C08 YI9 10 
YI9 N09 N1  N 0 1 N N N 108.445 127.437 115.304 1.243  0.909  -0.005 N09 YI9 11 
YI9 C11 C11 C 0 1 N N N 109.144 129.196 116.833 3.691  1.401  -0.001 C11 YI9 12 
YI9 C12 C12 C 0 1 N N N 108.804 130.232 117.655 5.068  0.762  0.004  C12 YI9 13 
YI9 O13 O1  O 0 1 N N N 109.653 130.816 118.231 6.077  1.434  0.008  O13 YI9 14 
YI9 N14 N2  N 0 1 N N N 107.543 130.571 117.809 5.120  -0.589 0.004  N14 YI9 15 
YI9 O16 O2  O 0 1 N N N 105.450 130.261 117.326 4.133  -2.540 0.001  O16 YI9 16 
YI9 N17 N3  N 0 1 N N N 106.878 128.919 116.367 2.764  -0.840 -0.005 N17 YI9 17 
YI9 H1  H1  H 0 1 N N N 115.202 123.701 111.278 -9.502 -0.575 0.005  H1  YI9 18 
YI9 H2  H2  H 0 1 N N N 113.608 123.125 111.874 -8.719 0.754  0.893  H2  YI9 19 
YI9 H3  H3  H 0 1 N N N 114.044 124.862 112.013 -8.720 0.752  -0.887 H3  YI9 20 
YI9 H4  H4  H 0 1 N N N 115.424 122.543 113.463 -7.297 -1.278 0.893  H4  YI9 21 
YI9 H5  H5  H 0 1 N N N 115.859 124.280 113.601 -7.298 -1.279 -0.887 H5  YI9 22 
YI9 H6  H6  H 0 1 N N N 113.137 123.061 114.283 -6.230 0.959  -0.889 H6  YI9 23 
YI9 H7  H7  H 0 1 N N N 114.395 123.542 115.471 -6.229 0.960  0.891  H7  YI9 24 
YI9 H8  H8  H 0 1 N N N 113.844 125.703 113.579 -4.807 -1.071 0.891  H8  YI9 25 
YI9 H9  H9  H 0 1 N N N 113.767 125.701 115.373 -4.808 -1.073 -0.889 H9  YI9 26 
YI9 H10 H10 H 0 1 N N N 111.525 125.477 115.379 -3.740 1.165  -0.891 H10 YI9 27 
YI9 H11 H11 H 0 1 N N N 111.571 124.181 114.136 -3.739 1.166  0.888  H11 YI9 28 
YI9 H12 H12 H 0 1 N N N 111.501 125.720 112.351 -2.317 -0.865 0.889  H12 YI9 29 
YI9 H13 H13 H 0 1 N N N 112.032 127.089 113.386 -2.318 -0.867 -0.891 H13 YI9 30 
YI9 H14 H14 H 0 1 N N N 109.616 127.230 112.869 -1.250 1.371  -0.894 H14 YI9 31 
YI9 H15 H15 H 0 1 N N N 109.367 125.605 113.593 -1.249 1.373  0.886  H15 YI9 32 
YI9 H16 H16 H 0 1 N N N 110.231 126.467 115.767 0.173  -0.659 0.887  H16 YI9 33 
YI9 H17 H17 H 0 1 N N N 110.404 128.097 115.033 0.172  -0.660 -0.893 H17 YI9 34 
YI9 H18 H18 H 0 1 N N N 107.717 126.879 114.906 1.074  1.865  -0.006 H18 YI9 35 
YI9 H19 H19 H 0 1 N N N 109.680 128.454 117.444 3.616  2.038  -0.882 H19 YI9 36 
YI9 H20 H20 H 0 1 N N N 109.821 129.596 116.064 3.610  2.038  0.879  H20 YI9 37 
YI9 H21 H21 H 0 1 N N N 107.311 131.328 118.420 5.984  -1.030 0.008  H21 YI9 38 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YI9 C01 C02 SING N N 1  
YI9 C06 C07 SING N N 2  
YI9 C06 C05 SING N N 3  
YI9 C02 C03 SING N N 4  
YI9 C07 C08 SING N N 5  
YI9 C05 C04 SING N N 6  
YI9 C04 C03 SING N N 7  
YI9 C08 N09 SING N N 8  
YI9 N09 C10 SING N N 9  
YI9 C10 N17 DOUB N N 10 
YI9 C10 C11 SING N N 11 
YI9 N17 C15 SING N N 12 
YI9 C11 C12 SING N N 13 
YI9 C15 O16 DOUB N N 14 
YI9 C15 N14 SING N N 15 
YI9 C12 N14 SING N N 16 
YI9 C12 O13 DOUB N N 17 
YI9 C01 H1  SING N N 18 
YI9 C01 H2  SING N N 19 
YI9 C01 H3  SING N N 20 
YI9 C02 H4  SING N N 21 
YI9 C02 H5  SING N N 22 
YI9 C03 H6  SING N N 23 
YI9 C03 H7  SING N N 24 
YI9 C04 H8  SING N N 25 
YI9 C04 H9  SING N N 26 
YI9 C05 H10 SING N N 27 
YI9 C05 H11 SING N N 28 
YI9 C06 H12 SING N N 29 
YI9 C06 H13 SING N N 30 
YI9 C07 H14 SING N N 31 
YI9 C07 H15 SING N N 32 
YI9 C08 H16 SING N N 33 
YI9 C08 H17 SING N N 34 
YI9 N09 H18 SING N N 35 
YI9 C11 H19 SING N N 36 
YI9 C11 H20 SING N N 37 
YI9 N14 H21 SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YI9 SMILES           ACDLabs              12.01 "O=C1N=C(NCCCCCCCC)CC(=O)N1"                                                                       
YI9 InChI            InChI                1.06  "InChI=1S/C12H21N3O2/c1-2-3-4-5-6-7-8-13-10-9-11(16)15-12(17)14-10/h2-9H2,1H3,(H2,13,14,15,16,17)" 
YI9 InChIKey         InChI                1.06  PNPWQWFLXGGIRQ-UHFFFAOYSA-N                                                                        
YI9 SMILES_CANONICAL CACTVS               3.385 "CCCCCCCCNC1=NC(=O)NC(=O)C1"                                                                       
YI9 SMILES           CACTVS               3.385 "CCCCCCCCNC1=NC(=O)NC(=O)C1"                                                                       
YI9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCNC1=NC(=O)NC(=O)C1"                                                                       
YI9 SMILES           "OpenEye OEToolkits" 2.0.7 "CCCCCCCCNC1=NC(=O)NC(=O)C1"                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YI9 "SYSTEMATIC NAME" ACDLabs              12.01 "6-(octylamino)pyrimidine-2,4(3H,5H)-dione" 
YI9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-(octylamino)-5~{H}-pyrimidine-2,4-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YI9 "Create component" 2023-02-03 RCSB 
YI9 "Initial release"  2023-11-01 RCSB 
# 
