data_YF9
# 
_chem_comp.id                                    YF9 
_chem_comp.name                                  "(2R)-6-chloro-2-{[6-(oxetane-3-sulfonyl)-6,7-dihydro-5H-pyrrolo[3,4-d]pyrimidin-2-yl]amino}-2,3-dihydro-1H-indene-4-carbonitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H18 Cl N5 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-13 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        431.896 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YF9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G61 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YF9 C10 C1  C  0 1 N N N N N N -12.907 6.518  44.454 3.655  -1.528 0.280  C10 YF9 1  
YF9 C11 C2  C  0 1 N N S N N N -13.299 5.896  45.810 2.571  -0.491 -0.085 C11 YF9 2  
YF9 C16 C3  C  0 1 Y N N N N N -13.228 9.217  48.058 -2.122 -0.027 0.626  C16 YF9 3  
YF9 C17 C4  C  0 1 Y N N N N N -14.370 9.811  48.557 -2.240 0.574  -0.614 C17 YF9 4  
YF9 C18 C5  C  0 1 Y N N N N N -15.539 9.244  48.294 -1.101 0.746  -1.384 C18 YF9 5  
YF9 C20 C6  C  0 1 N N N N N N -14.070 11.000 49.430 -3.684 0.924  -0.853 C20 YF9 6  
YF9 C22 C7  C  0 1 N N N N N N -12.060 10.004 48.437 -3.485 -0.100 1.261  C22 YF9 7  
YF9 C24 C8  C  0 1 N N N N N N -11.334 11.600 51.437 -6.784 -0.870 -0.116 C24 YF9 8  
YF9 C25 C9  C  0 1 N N N N N N -10.591 12.421 52.588 -8.324 -0.894 -0.120 C25 YF9 9  
YF9 C27 C10 C  0 1 N N N N N N -12.499 11.526 52.513 -6.892 -0.880 -1.652 C27 YF9 10 
YF9 N1  N1  N  0 1 N N N N N N -10.677 7.690  41.662 6.698  -3.820 0.043  N1  YF9 11 
YF9 C2  C11 C  0 1 N N N N N N -10.928 6.701  42.103 6.511  -2.700 0.029  C2  YF9 12 
YF9 C3  C12 C  0 1 Y N N N N N -11.301 5.438  42.753 6.274  -1.288 0.010  C3  YF9 13 
YF9 C4  C13 C  0 1 Y N N N N N -10.730 4.242  42.266 7.344  -0.403 -0.124 C4  YF9 14 
YF9 C5  C14 C  0 1 Y N N N N N -11.092 3.162  42.896 7.108  0.958  -0.141 C5  YF9 15 
YF9 CL6 CL1 CL 0 0 N N N N N N -10.352 1.680  42.260 8.435  2.065  -0.308 CL6 YF9 16 
YF9 C7  C15 C  0 1 Y N N N N N -12.011 3.092  44.000 5.817  1.440  -0.027 C7  YF9 17 
YF9 C8  C16 C  0 1 Y N N N N N -12.535 4.194  44.429 4.748  0.566  0.106  C8  YF9 18 
YF9 C9  C17 C  0 1 Y N N N N N -12.186 5.420  43.838 4.970  -0.795 0.125  C9  YF9 19 
YF9 C12 C18 C  0 1 N N N N N N -13.523 4.418  45.484 3.267  0.846  0.247  C12 YF9 20 
YF9 N13 N2  N  0 1 N N N N N N -14.489 6.468  46.414 1.375  -0.675 0.741  N13 YF9 21 
YF9 C14 C19 C  0 1 Y N N N N N -14.456 7.570  47.127 0.142  -0.249 0.278  C14 YF9 22 
YF9 N15 N3  N  0 1 Y N N N N N -13.167 8.109  47.359 -0.929 -0.423 1.039  N15 YF9 23 
YF9 N19 N4  N  0 1 Y N N N N N -15.639 8.117  47.569 0.063  0.331  -0.910 N19 YF9 24 
YF9 N21 N5  N  0 1 N N N N N N -12.659 11.139 49.225 -4.446 0.497  0.327  N21 YF9 25 
YF9 S23 S1  S  0 1 N N N N N N -11.696 12.330 49.990 -6.077 0.659  0.558  S23 YF9 26 
YF9 O26 O1  O  0 1 N N N N N N -11.881 12.590 53.262 -8.199 -1.452 -1.444 O26 YF9 27 
YF9 O28 O2  O  0 1 N N N N N N -10.462 12.518 49.240 -6.437 1.772  -0.247 O28 YF9 28 
YF9 O29 O3  O  0 1 N N N N N N -12.508 13.503 49.968 -6.228 0.697  1.971  O29 YF9 29 
YF9 H32 H1  H  0 1 N N N N N N -12.263 7.400  44.586 3.527  -1.862 1.309  H32 YF9 30 
YF9 H33 H2  H  0 1 N N N N N N -13.794 6.797  43.867 3.611  -2.377 -0.402 H33 YF9 31 
YF9 H34 H3  H  0 1 N N N N N N -12.447 5.984  46.500 2.323  -0.547 -1.145 H34 YF9 32 
YF9 H38 H4  H  0 1 N N N N N N -16.440 9.702  48.675 -1.162 1.211  -2.357 H38 YF9 33 
YF9 H40 H5  H  0 1 N N N N N N -14.617 11.894 49.097 -3.786 2.000  -0.988 H40 YF9 34 
YF9 H39 H6  H  0 1 N N N N N N -14.307 10.797 50.485 -4.050 0.403  -1.737 H39 YF9 35 
YF9 H41 H7  H  0 1 N N N N N N -11.369 9.413  49.057 -3.750 -1.140 1.449  H41 YF9 36 
YF9 H42 H8  H  0 1 N N N N N N -11.529 10.376 47.549 -3.486 0.456  2.199  H42 YF9 37 
YF9 H43 H9  H  0 1 N N N N N N -10.867 10.618 51.273 -6.331 -1.770 0.299  H43 YF9 38 
YF9 H44 H10 H  0 1 N N N N N N -9.855  11.836 53.159 -8.756 -1.581 0.609  H44 YF9 39 
YF9 H45 H11 H  0 1 N N N N N N -10.130 13.361 52.249 -8.781 0.095  -0.099 H45 YF9 40 
YF9 H47 H12 H  0 1 N N N N N N -13.493 11.777 52.115 -6.912 0.114  -2.100 H47 YF9 41 
YF9 H46 H13 H  0 1 N N N N N N -12.551 10.569 53.053 -6.187 -1.554 -2.140 H46 YF9 42 
YF9 H30 H14 H  0 1 N N N N N N -10.044 4.225  41.432 8.352  -0.780 -0.213 H30 YF9 43 
YF9 H31 H15 H  0 1 N N N N N N -12.257 2.145  44.458 5.639  2.505  -0.042 H31 YF9 44 
YF9 H36 H16 H  0 1 N N N N N N -14.546 4.238  45.121 2.959  1.618  -0.459 H36 YF9 45 
YF9 H35 H17 H  0 1 N N N N N N -13.327 3.780  46.359 3.034  1.150  1.267  H35 YF9 46 
YF9 H37 H18 H  0 1 N N N N N N -15.126 6.642  45.663 1.447  -1.095 1.612  H37 YF9 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YF9 N1  C2  TRIP N N 1  
YF9 C2  C3  SING N N 2  
YF9 C3  C4  DOUB Y N 3  
YF9 C3  C9  SING Y N 4  
YF9 C4  C5  SING Y N 5  
YF9 C5  CL6 SING N N 6  
YF9 C5  C7  DOUB Y N 7  
YF9 C7  C8  SING Y N 8  
YF9 C8  C9  DOUB Y N 9  
YF9 C8  C12 SING N N 10 
YF9 C9  C10 SING N N 11 
YF9 C10 C11 SING N N 12 
YF9 C11 C12 SING N N 13 
YF9 C11 N13 SING N N 14 
YF9 N13 C14 SING N N 15 
YF9 C14 N15 DOUB Y N 16 
YF9 C14 N19 SING Y N 17 
YF9 N15 C16 SING Y N 18 
YF9 C16 C17 DOUB Y N 19 
YF9 C16 C22 SING N N 20 
YF9 C17 C18 SING Y N 21 
YF9 C17 C20 SING N N 22 
YF9 C18 N19 DOUB Y N 23 
YF9 C20 N21 SING N N 24 
YF9 N21 C22 SING N N 25 
YF9 N21 S23 SING N N 26 
YF9 S23 C24 SING N N 27 
YF9 S23 O28 DOUB N N 28 
YF9 S23 O29 DOUB N N 29 
YF9 C24 C25 SING N N 30 
YF9 C24 C27 SING N N 31 
YF9 C25 O26 SING N N 32 
YF9 O26 C27 SING N N 33 
YF9 C10 H32 SING N N 34 
YF9 C10 H33 SING N N 35 
YF9 C11 H34 SING N N 36 
YF9 C18 H38 SING N N 37 
YF9 C20 H40 SING N N 38 
YF9 C20 H39 SING N N 39 
YF9 C22 H41 SING N N 40 
YF9 C22 H42 SING N N 41 
YF9 C24 H43 SING N N 42 
YF9 C25 H44 SING N N 43 
YF9 C25 H45 SING N N 44 
YF9 C27 H47 SING N N 45 
YF9 C27 H46 SING N N 46 
YF9 C4  H30 SING N N 47 
YF9 C7  H31 SING N N 48 
YF9 C12 H36 SING N N 49 
YF9 C12 H35 SING N N 50 
YF9 N13 H37 SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YF9 SMILES           ACDLabs              12.01 "O=S(=O)(N1Cc2nc(NC3Cc4cc(Cl)cc(C#N)c4C3)ncc2C1)C1COC1"                                                                                                                 
YF9 InChI            InChI                1.06  "InChI=1S/C19H18ClN5O3S/c20-14-1-11-3-15(4-17(11)12(2-14)5-21)23-19-22-6-13-7-25(8-18(13)24-19)29(26,27)16-9-28-10-16/h1-2,6,15-16H,3-4,7-10H2,(H,22,23,24)/t15-/m1/s1" 
YF9 InChIKey         InChI                1.06  UHKXYXZSKFBQCD-OAHLLOKOSA-N                                                                                                                                             
YF9 SMILES_CANONICAL CACTVS               3.385 "Clc1cc2C[C@@H](Cc2c(c1)C#N)Nc3ncc4CN(Cc4n3)[S](=O)(=O)C5COC5"                                                                                                          
YF9 SMILES           CACTVS               3.385 "Clc1cc2C[CH](Cc2c(c1)C#N)Nc3ncc4CN(Cc4n3)[S](=O)(=O)C5COC5"                                                                                                            
YF9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(cc(c2c1C[C@@H](C2)Nc3ncc4c(n3)CN(C4)S(=O)(=O)C5COC5)C#N)Cl"                                                                                                        
YF9 SMILES           "OpenEye OEToolkits" 2.0.7 "c1c(cc(c2c1CC(C2)Nc3ncc4c(n3)CN(C4)S(=O)(=O)C5COC5)C#N)Cl"                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YF9 "SYSTEMATIC NAME" ACDLabs              12.01 "(2R)-6-chloro-2-{[6-(oxetane-3-sulfonyl)-6,7-dihydro-5H-pyrrolo[3,4-d]pyrimidin-2-yl]amino}-2,3-dihydro-1H-indene-4-carbonitrile"       
YF9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-6-chloranyl-2-[[6-(oxetan-3-ylsulfonyl)-5,7-dihydropyrrolo[3,4-d]pyrimidin-2-yl]amino]-2,3-dihydro-1~{H}-indene-4-carbonitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YF9 "Create component" 2023-06-13 RCSB 
YF9 "Initial release"  2024-12-18 RCSB 
# 
