data_Y79
# 
_chem_comp.id                                    Y79 
_chem_comp.name                                  "N-{4-[4-(2-amino-4-oxo-3,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)butyl]-2-fluorobenzoyl}-L-glutamic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H24 F N5 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-01-09 
_chem_comp.pdbx_modified_date                    2023-09-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        473.454 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y79 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8FJU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y79 C8  C1  C 0 1 Y N N -2.964 69.983 -1.761  -6.800  0.331  0.505  C8  Y79 1  
Y79 C5  C2  C 0 1 Y N N -1.283 68.977 -0.669  -7.583  2.294  1.289  C5  Y79 2  
Y79 C6  C3  C 0 1 Y N N -2.414 68.166 -0.666  -6.281  2.186  1.622  C6  Y79 3  
Y79 N1  N1  N 0 1 N N N -1.007 71.297 -1.728  -9.093  0.702  0.013  N1  Y79 4  
Y79 C2  C4  C 0 1 N N N -1.625 72.245 -2.418  -9.148  -0.451 -0.612 C2  Y79 5  
Y79 C4  C5  C 0 1 N N N -3.590 71.028 -2.502  -6.879  -0.904 -0.165 C4  Y79 6  
Y79 C9  C6  C 0 1 Y N N -1.653 70.153 -1.385  -7.947  1.131  0.577  C9  Y79 7  
Y79 C12 C7  C 0 1 Y N N -4.956 66.334 -8.740  2.678   -0.617 -0.507 C12 Y79 8  
Y79 C13 C8  C 0 1 Y N N -3.927 66.920 -8.023  1.717   -1.443 -1.099 C13 Y79 9  
Y79 C14 C9  C 0 1 Y N N -5.882 65.540 -8.077  2.320   0.661  -0.074 C14 Y79 10 
Y79 C15 C10 C 0 1 Y N N -3.794 66.704 -6.663  0.420   -0.987 -1.250 C15 Y79 11 
Y79 C16 C11 C 0 1 Y N N -5.750 65.320 -6.708  1.023   1.101  -0.233 C16 Y79 12 
Y79 C17 C12 C 0 1 N N N -5.005 66.663 -10.242 4.065   -1.097 -0.335 C17 Y79 13 
Y79 C20 C13 C 0 1 N N S -6.012 64.456 -11.284 6.362   -0.776 0.411  C20 Y79 14 
Y79 C21 C14 C 0 1 N N N -6.209 64.017 -12.736 7.312   0.421  0.480  C21 Y79 15 
Y79 C22 C15 C 0 1 N N N -5.765 65.115 -13.706 7.302   1.158  -0.860 C22 Y79 16 
Y79 C23 C16 C 0 1 N N N -5.649 64.660 -15.158 8.237   2.338  -0.792 C23 Y79 17 
Y79 C26 C17 C 0 1 N N N -5.045 63.498 -10.598 6.464   -1.572 1.687  C26 Y79 18 
Y79 C29 C18 C 0 1 N N N -4.731 68.222 -1.511  -4.413  0.530  1.320  C29 Y79 19 
Y79 C30 C19 C 0 1 N N N -4.655 66.871 -2.229  -3.595  0.898  0.081  C30 Y79 20 
Y79 C31 C20 C 0 1 N N N -4.513 67.021 -3.746  -2.158  0.401  0.252  C31 Y79 21 
Y79 C32 C21 C 0 1 N N N -4.541 65.684 -4.497  -1.340  0.770  -0.987 C32 Y79 22 
Y79 C33 C22 C 0 1 Y N N -4.707 65.903 -6.002  0.075   0.280  -0.819 C33 Y79 23 
Y79 F34 F1  F 0 1 N N N -3.025 67.708 -8.676  2.055   -2.681 -1.521 F34 Y79 24 
Y79 N11 N2  N 0 1 N N N -0.910 73.458 -2.769  -10.336 -0.850 -1.173 N11 Y79 25 
Y79 N19 N3  N 0 1 N N N -5.470 65.805 -11.332 4.987   -0.300 0.241  N19 Y79 26 
Y79 N3  N4  N 0 1 N N N -2.891 72.115 -2.798  -8.060  -1.268 -0.712 N3  Y79 27 
Y79 N7  N5  N 0 1 Y N N -3.398 68.774 -1.310  -5.789  1.005  1.156  N7  Y79 28 
Y79 O10 O1  O 0 1 N N N -4.923 70.929 -2.917  -5.902  -1.630 -0.251 O10 Y79 29 
Y79 O18 O2  O 0 1 N N N -4.604 67.733 -10.554 4.374   -2.210 -0.712 O18 Y79 30 
Y79 O24 O3  O 0 1 N N N -6.645 64.164 -15.747 8.390   3.135  -1.861 O24 Y79 31 
Y79 O25 O4  O 0 1 N N N -4.557 64.792 -15.770 8.849   2.566  0.224  O25 Y79 32 
Y79 O27 O5  O 0 1 N N N -3.877 63.356 -11.045 5.488   -1.726 2.382  O27 Y79 33 
Y79 O28 O6  O 0 1 N N N -5.421 62.841 -9.591  7.638   -2.110 2.051  O28 Y79 34 
Y79 H1  H1  H 0 1 N N N -0.324 68.760 -0.222  -8.233  3.124  1.526  H1  Y79 35 
Y79 H2  H2  H 0 1 N N N -2.479 67.190 -0.208  -5.715  2.923  2.173  H2  Y79 36 
Y79 H3  H3  H 0 1 N N N -6.702 65.094 -8.621  3.057   1.304  0.384  H3  Y79 37 
Y79 H4  H4  H 0 1 N N N -2.980 67.160 -6.119  -0.324  -1.622 -1.707 H4  Y79 38 
Y79 H5  H5  H 0 1 N N N -6.463 64.693 -6.193  0.745   2.090  0.102  H5  Y79 39 
Y79 H6  H6  H 0 1 N N N -6.979 64.444 -10.760 6.635   -1.408 -0.434 H6  Y79 40 
Y79 H7  H7  H 0 1 N N N -7.274 63.797 -12.904 6.985   1.099  1.270  H7  Y79 41 
Y79 H8  H8  H 0 1 N N N -5.614 63.111 -12.922 8.321   0.072  0.696  H8  Y79 42 
Y79 H9  H9  H 0 1 N N N -4.781 65.485 -13.381 7.628   0.481  -1.650 H9  Y79 43 
Y79 H10 H10 H 0 1 N N N -6.498 65.934 -13.659 6.292   1.507  -1.076 H10 Y79 44 
Y79 H11 H11 H 0 1 N N N -5.323 68.921 -2.119  -4.416  -0.553 1.445  H11 Y79 45 
Y79 H12 H12 H 0 1 N N N -5.216 68.085 -0.533  -3.970  0.996  2.200  H12 Y79 46 
Y79 H13 H13 H 0 1 N N N -5.574 66.305 -2.015  -4.039  0.432  -0.799 H13 Y79 47 
Y79 H14 H14 H 0 1 N N N -3.785 66.316 -1.846  -3.593  1.981  -0.044 H14 Y79 48 
Y79 H15 H15 H 0 1 N N N -3.556 67.520 -3.959  -1.715  0.867  1.132  H15 Y79 49 
Y79 H16 H16 H 0 1 N N N -5.341 67.644 -4.114  -2.161  -0.682 0.377  H16 Y79 50 
Y79 H17 H17 H 0 1 N N N -5.383 65.081 -4.126  -1.783  0.303  -1.867 H17 Y79 51 
Y79 H18 H18 H 0 1 N N N -3.598 65.149 -4.313  -1.338  1.852  -1.112 H18 Y79 52 
Y79 H19 H19 H 0 1 N N N 0.043  73.575 -2.490  -11.120 -0.283 -1.104 H19 Y79 53 
Y79 H20 H20 H 0 1 N N N -1.371 74.177 -3.289  -10.391 -1.699 -1.639 H20 Y79 54 
Y79 H21 H21 H 0 1 N N N -5.406 66.206 -12.246 4.741   0.588  0.542  H21 Y79 55 
Y79 H22 H22 H 0 1 N N N -3.325 72.851 -3.317  -8.134  -2.115 -1.177 H22 Y79 56 
Y79 H23 H23 H 0 1 N N N -6.408 63.944 -16.640 9.001   3.879  -1.770 H23 Y79 57 
Y79 H24 H24 H 0 1 N N N -4.710 62.288 -9.290  7.654   -2.612 2.877  H24 Y79 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y79 O25 C23 DOUB N N 1  
Y79 O24 C23 SING N N 2  
Y79 C23 C22 SING N N 3  
Y79 C22 C21 SING N N 4  
Y79 C21 C20 SING N N 5  
Y79 N19 C20 SING N N 6  
Y79 N19 C17 SING N N 7  
Y79 C20 C26 SING N N 8  
Y79 O27 C26 DOUB N N 9  
Y79 C26 O28 SING N N 10 
Y79 O18 C17 DOUB N N 11 
Y79 C17 C12 SING N N 12 
Y79 C12 C14 DOUB Y N 13 
Y79 C12 C13 SING Y N 14 
Y79 F34 C13 SING N N 15 
Y79 C14 C16 SING Y N 16 
Y79 C13 C15 DOUB Y N 17 
Y79 C16 C33 DOUB Y N 18 
Y79 C15 C33 SING Y N 19 
Y79 C33 C32 SING N N 20 
Y79 C32 C31 SING N N 21 
Y79 C31 C30 SING N N 22 
Y79 O10 C4  DOUB N N 23 
Y79 N3  C4  SING N N 24 
Y79 N3  C2  SING N N 25 
Y79 N11 C2  SING N N 26 
Y79 C4  C8  SING N N 27 
Y79 C2  N1  DOUB N N 28 
Y79 C30 C29 SING N N 29 
Y79 C8  C9  DOUB Y N 30 
Y79 C8  N7  SING Y N 31 
Y79 N1  C9  SING N N 32 
Y79 C29 N7  SING N N 33 
Y79 C9  C5  SING Y N 34 
Y79 N7  C6  SING Y N 35 
Y79 C5  C6  DOUB Y N 36 
Y79 C5  H1  SING N N 37 
Y79 C6  H2  SING N N 38 
Y79 C14 H3  SING N N 39 
Y79 C15 H4  SING N N 40 
Y79 C16 H5  SING N N 41 
Y79 C20 H6  SING N N 42 
Y79 C21 H7  SING N N 43 
Y79 C21 H8  SING N N 44 
Y79 C22 H9  SING N N 45 
Y79 C22 H10 SING N N 46 
Y79 C29 H11 SING N N 47 
Y79 C29 H12 SING N N 48 
Y79 C30 H13 SING N N 49 
Y79 C30 H14 SING N N 50 
Y79 C31 H15 SING N N 51 
Y79 C31 H16 SING N N 52 
Y79 C32 H17 SING N N 53 
Y79 C32 H18 SING N N 54 
Y79 N11 H19 SING N N 55 
Y79 N11 H20 SING N N 56 
Y79 N19 H21 SING N N 57 
Y79 N3  H22 SING N N 58 
Y79 O24 H23 SING N N 59 
Y79 O28 H24 SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y79 SMILES           ACDLabs              12.01 "O=C(O)C(CCC(=O)O)NC(=O)c1ccc(cc1F)CCCCn1ccc2N=C(N)NC(=O)c21"                                                                                                                                                     
Y79 InChI            InChI                1.06  "InChI=1S/C22H24FN5O6/c23-14-11-12(4-5-13(14)19(31)25-16(21(33)34)6-7-17(29)30)3-1-2-9-28-10-8-15-18(28)20(32)27-22(24)26-15/h4-5,8,10-11,16H,1-3,6-7,9H2,(H,25,31)(H,29,30)(H,33,34)(H3,24,26,27,32)/t16-/m0/s1" 
Y79 InChIKey         InChI                1.06  XKLSPKTUYQAZHW-INIZCTEOSA-N                                                                                                                                                                                       
Y79 SMILES_CANONICAL CACTVS               3.385 "NC1=Nc2ccn(CCCCc3ccc(c(F)c3)C(=O)N[C@@H](CCC(O)=O)C(O)=O)c2C(=O)N1"                                                                                                                                              
Y79 SMILES           CACTVS               3.385 "NC1=Nc2ccn(CCCCc3ccc(c(F)c3)C(=O)N[CH](CCC(O)=O)C(O)=O)c2C(=O)N1"                                                                                                                                                
Y79 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1CCCCn2ccc3c2C(=O)NC(=N3)N)F)C(=O)N[C@@H](CCC(=O)O)C(=O)O"                                                                                                                                              
Y79 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1CCCCn2ccc3c2C(=O)NC(=N3)N)F)C(=O)NC(CCC(=O)O)C(=O)O"                                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y79 "SYSTEMATIC NAME" ACDLabs              12.01 "N-{4-[4-(2-amino-4-oxo-3,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)butyl]-2-fluorobenzoyl}-L-glutamic acid"                              
Y79 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[4-[4-(2-azanyl-4-oxidanylidene-3~{H}-pyrrolo[3,2-d]pyrimidin-5-yl)butyl]-2-fluoranyl-phenyl]carbonylamino]pentanedioic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y79 "Create component" 2023-01-09 RCSB 
Y79 "Initial release"  2023-09-06 RCSB 
# 
