data_Y59
# 
_chem_comp.id                                    Y59 
_chem_comp.name                                  "7-(4,7-diazaspiro[2.5]octan-7-yl)-2-(2,8-dimethylimidazo[1,2-b]pyridazin-6-yl)-1~{H}-pyrido[1,2-a]pyrimidin-4-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H24 N7 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-11-21 
_chem_comp.pdbx_modified_date                    2024-03-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        402.472 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y59 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   Y 
_chem_comp.pdbx_model_coordinates_db_code        8R62 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y59 C8   C1  C 0 1 Y N N N N N 26.052 18.432 33.203 ? ? ? C8   Y59 1  
Y59 O17  O1  O 0 1 N N N N N N 33.942 20.738 31.388 ? ? ? O17  Y59 2  
Y59 C7   C2  C 0 1 Y N N N N N 27.222 19.146 33.165 ? ? ? C7   Y59 3  
Y59 C2   C3  C 0 1 Y N N N N N 29.372 16.740 30.637 ? ? ? C2   Y59 4  
Y59 C1   C4  C 0 1 Y N N N N N 30.001 17.910 31.164 ? ? ? C1   Y59 5  
Y59 C3   C5  C 0 1 Y N N N N N 28.059 16.417 31.021 ? ? ? C3   Y59 6  
Y59 C4   C6  C 0 1 Y N N N N N 27.449 17.299 31.918 ? ? ? C4   Y59 7  
Y59 N5   N1  N 0 1 Y N N N N N 28.084 18.422 32.370 ? ? ? N5   Y59 8  
Y59 N6   N2  N 0 1 Y N N N N N 29.349 18.745 32.008 ? ? ? N6   Y59 9  
Y59 N9   N3  N 0 1 Y N N N N N 26.160 17.305 32.418 ? ? ? N9   Y59 10 
Y59 C10  C7  C 0 1 Y N N N N N 36.167 18.061 28.936 ? ? ? C10  Y59 11 
Y59 C11  C8  C 0 1 Y N N N N N 35.464 16.943 28.460 ? ? ? C11  Y59 12 
Y59 C12  C9  C 0 1 Y N N N N N 34.091 16.791 28.726 ? ? ? C12  Y59 13 
Y59 C13  C10 C 0 1 Y N N N N N 33.390 17.728 29.502 ? ? ? C13  Y59 14 
Y59 N14  N4  N 0 1 Y N N N N N 34.059 18.846 30.034 ? ? ? N14  Y59 15 
Y59 C15  C11 C 0 1 Y N N N N N 35.428 19.012 29.647 ? ? ? C15  Y59 16 
Y59 C16  C12 C 0 1 N N N N N N 33.451 19.696 30.942 ? ? ? C16  Y59 17 
Y59 C18  C13 C 0 1 N N N N N N 32.089 19.282 31.302 ? ? ? C18  Y59 18 
Y59 C19  C14 C 0 1 N N N N N N 31.386 18.190 30.757 ? ? ? C19  Y59 19 
Y59 N20  N5  N 0 1 N N N N N N 32.053 17.479 29.745 ? ? ? N20  Y59 20 
Y59 C21  C15 C 0 1 N N N N N N 39.571 18.767 30.020 ? ? ? C21  Y59 21 
Y59 C22  C16 C 0 1 N N N N N N 38.399 19.336 29.176 ? ? ? C22  Y59 22 
Y59 N23  N6  N 0 1 N N N N N N 37.565 18.184 28.702 ? ? ? N23  Y59 23 
Y59 C24  C17 C 0 1 N N N N N N 38.332 17.004 28.191 ? ? ? C24  Y59 24 
Y59 C25  C18 C 0 1 N N N N N N 39.828 17.300 27.962 ? ? ? C25  Y59 25 
Y59 N26  N7  N 0 1 N N N N N N 40.518 18.028 29.099 ? ? ? N26  Y59 26 
Y59 C27  C19 C 0 1 N N N N N N 40.664 16.282 27.225 ? ? ? C27  Y59 27 
Y59 C28  C20 C 0 1 N N N N N N 40.302 17.581 26.561 ? ? ? C28  Y59 28 
Y59 C29  C21 C 0 1 N N N N N N 27.331 15.208 30.464 ? ? ? C29  Y59 29 
Y59 C30  C22 C 0 1 N N N N N N 24.849 18.875 33.937 ? ? ? C30  Y59 30 
Y59 H7   H1  H 0 1 N N N N N N 27.426 20.085 33.658 ? ? ? H7   Y59 31 
Y59 H2   H2  H 0 1 N N N N N N 29.905 16.105 29.945 ? ? ? H2   Y59 32 
Y59 H11  H3  H 0 1 N N N N N N 35.983 16.192 27.883 ? ? ? H11  Y59 33 
Y59 H12  H4  H 0 1 N N N N N N 33.566 15.937 28.325 ? ? ? H12  Y59 34 
Y59 H15  H5  H 0 1 N N N N N N 35.922 19.932 29.922 ? ? ? H15  Y59 35 
Y59 H18  H6  H 0 1 N N N N N N 31.580 19.868 32.053 ? ? ? H18  Y59 36 
Y59 H20  H7  H 0 1 N N N N N N 31.562 16.796 29.203 ? ? ? H20  Y59 37 
Y59 H21B H8  H 0 0 N N N N N N 39.178 18.075 30.780 ? ? ? H21B Y59 38 
Y59 H21A H9  H 0 0 N N N N N N 40.105 19.591 30.516 ? ? ? H21A Y59 39 
Y59 H22B H10 H 0 0 N N N N N N 38.796 19.889 28.312 ? ? ? H22B Y59 40 
Y59 H22A H11 H 0 0 N N N N N N 37.787 20.010 29.794 ? ? ? H22A Y59 41 
Y59 H24B H12 H 0 0 N N N N N N 37.889 16.687 27.235 ? ? ? H24B Y59 42 
Y59 H24A H13 H 0 0 N N N N N N 38.246 16.188 28.924 ? ? ? H24A Y59 43 
Y59 H26B H14 H 0 0 N N N N N N 41.024 17.357 29.641 ? ? ? H26B Y59 44 
Y59 H27A H16 H 0 0 N N N N N N 40.208 15.342 26.880 ? ? ? H27A Y59 45 
Y59 H27B H17 H 0 0 N N N N N N 41.702 16.094 27.536 ? ? ? H27B Y59 46 
Y59 H28B H18 H 0 0 N N N N N N 41.076 18.343 26.385 ? ? ? H28B Y59 47 
Y59 H28A H19 H 0 0 N N N N N N 39.582 17.591 25.729 ? ? ? H28A Y59 48 
Y59 H29B H20 H 0 0 N N N N N N 27.510 14.339 31.115 ? ? ? H29B Y59 49 
Y59 H29A H21 H 0 0 N N N N N N 26.252 15.417 30.421 ? ? ? H29A Y59 50 
Y59 H29C H22 H 0 0 N N N N N N 27.703 14.991 29.452 ? ? ? H29C Y59 51 
Y59 H30C H23 H 0 0 N N N N N N 24.030 18.161 33.765 ? ? ? H30C Y59 52 
Y59 H30B H24 H 0 0 N N N N N N 25.073 18.923 35.013 ? ? ? H30B Y59 53 
Y59 H30A H25 H 0 0 N N N N N N 24.548 19.871 33.580 ? ? ? H30A Y59 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y59 C28 C27  SING N N 1  
Y59 C28 C25  SING N N 2  
Y59 C27 C25  SING N N 3  
Y59 C25 C24  SING N N 4  
Y59 C25 N26  SING N N 5  
Y59 C24 N23  SING N N 6  
Y59 C11 C12  DOUB Y N 7  
Y59 C11 C10  SING Y N 8  
Y59 N23 C10  SING N N 9  
Y59 N23 C22  SING N N 10 
Y59 C12 C13  SING Y N 11 
Y59 C10 C15  DOUB Y N 12 
Y59 N26 C21  SING N N 13 
Y59 C22 C21  SING N N 14 
Y59 C13 N20  SING N N 15 
Y59 C13 N14  DOUB Y N 16 
Y59 C15 N14  SING Y N 17 
Y59 N20 C19  SING N N 18 
Y59 N14 C16  SING N N 19 
Y59 C29 C3   SING N N 20 
Y59 C2  C3   DOUB Y N 21 
Y59 C2  C1   SING Y N 22 
Y59 C19 C1   SING N N 23 
Y59 C19 C18  DOUB N N 24 
Y59 C16 C18  SING N N 25 
Y59 C16 O17  DOUB N N 26 
Y59 C3  C4   SING Y N 27 
Y59 C1  N6   DOUB Y N 28 
Y59 C4  N5   SING Y N 29 
Y59 C4  N9   DOUB Y N 30 
Y59 N6  N5   SING Y N 31 
Y59 N5  C7   SING Y N 32 
Y59 N9  C8   SING Y N 33 
Y59 C7  C8   DOUB Y N 34 
Y59 C8  C30  SING N N 35 
Y59 C7  H7   SING N N 36 
Y59 C2  H2   SING N N 37 
Y59 C11 H11  SING N N 38 
Y59 C12 H12  SING N N 39 
Y59 C15 H15  SING N N 40 
Y59 C18 H18  SING N N 41 
Y59 N20 H20  SING N N 42 
Y59 C21 H21B SING N N 43 
Y59 C21 H21A SING N N 44 
Y59 C22 H22B SING N N 45 
Y59 C22 H22A SING N N 46 
Y59 C24 H24B SING N N 47 
Y59 C24 H24A SING N N 48 
Y59 N26 H26B SING N N 49 
Y59 C27 H27A SING N N 50 
Y59 C27 H27B SING N N 51 
Y59 C28 H28B SING N N 52 
Y59 C28 H28A SING N N 53 
Y59 C29 H29B SING N N 54 
Y59 C29 H29A SING N N 55 
Y59 C29 H29C SING N N 56 
Y59 C30 H30C SING N N 57 
Y59 C30 H30B SING N N 58 
Y59 C30 H30A SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y59 InChI            InChI                1.06  "InChI=1S/C22H24N7O/c1-14-9-18(26-29-11-15(2)24-21(14)29)17-10-20(30)28-12-16(3-4-19(28)25-17)27-8-7-23-22(13-27)5-6-22/h3-4,9-12,23H,5-8,13H2,1-2H3,(H,25,30)" 
Y59 InChIKey         InChI                1.06  WUBACWPUEMOWBL-UHFFFAOYSA-N                                                                                                                                     
Y59 SMILES_CANONICAL CACTVS               3.385 "Cc1cn2nc(cc(C)c2n1)C3=CC(=O)[n]4cc(ccc4N3)N5CCNC6(CC6)C5"                                                                                                      
Y59 SMILES           CACTVS               3.385 "Cc1cn2nc(cc(C)c2n1)C3=CC(=O)[n]4cc(ccc4N3)N5CCNC6(CC6)C5"                                                                                                      
Y59 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(nn2c1nc(c2)C)C3=CC(=O)[N]4=C(N3)C=CC(=C4)N5CCNC6(C5)CC6"                                                                                                 
Y59 SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc(nn2c1nc(c2)C)C3=CC(=O)[N]4=C(N3)C=CC(=C4)N5CCNC6(C5)CC6"                                                                                                 
# 
_pdbx_chem_comp_identifier.comp_id           Y59 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "7-(4,7-diazaspiro[2.5]octan-7-yl)-2-(2,8-dimethylimidazo[1,2-b]pyridazin-6-yl)-1~{H}-pyrido[1,2-a]pyrimidin-4-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y59 "Create component" 2023-11-21 PDBE 
Y59 "Initial release"  2024-03-06 RCSB 
# 
