data_XH9
# 
_chem_comp.id                                    XH9 
_chem_comp.name                                  "2-[[4-(5-chloranylpyridin-3-yl)carbonyl-1,4-diazepan-1-yl]methyl]benzenecarbonitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H19 Cl N4 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-11-02 
_chem_comp.pdbx_modified_date                    2024-02-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        354.833 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XH9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8R12 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XH9 C10  C1  C  0 1 N N N N N N -21.338 -3.999 -28.372 1.455  0.986  0.207  C10  XH9 1  
XH9 N12  N1  N  0 1 N N N N N N -21.432 -4.958 -26.103 -0.815 0.353  0.877  N12  XH9 2  
XH9 C13  C2  C  0 1 N N N N N N -20.452 -4.789 -25.027 -1.716 1.334  0.670  C13  XH9 3  
XH9 C15  C3  C  0 1 Y N N N N N -18.385 -6.218 -25.254 -3.786 -0.063 0.561  C15  XH9 4  
XH9 C20  C4  C  0 1 Y N N N N N -18.064 -3.844 -25.414 -3.549 1.785  -0.964 C20  XH9 5  
XH9 C22  C5  C  0 1 Y N N N N N -22.137 -4.763 -31.669 4.574  1.555  -0.526 C22  XH9 6  
XH9 C24  C6  C  0 1 Y N N N N N -21.355 -3.956 -33.811 6.455  0.794  0.756  C24  XH9 7  
XH9 N01  N2  N  0 1 N N N N N N -22.391 0.177  -31.467 4.011  -3.207 -0.280 N01  XH9 8  
XH9 C02  C7  C  0 1 N N N N N N -22.272 -0.933 -31.731 4.378  -2.136 -0.183 C02  XH9 9  
XH9 C03  C8  C  0 1 Y N N N N N -22.095 -2.399 -32.135 4.840  -0.786 -0.060 C03  XH9 10 
XH9 C04  C9  C  0 1 Y N N N N N -22.356 -3.445 -31.240 4.123  0.257  -0.649 C04  XH9 11 
XH9 C05  C10 C  0 1 N N N N N N -22.876 -3.143 -29.802 2.859  -0.034 -1.416 C05  XH9 12 
XH9 N06  N3  N  0 1 N N N N N N -22.601 -4.102 -28.976 1.746  -0.218 -0.475 N06  XH9 13 
XH9 C07  C11 C  0 1 N N N N N N -23.716 -4.467 -28.234 0.618  -0.886 -1.123 C07  XH9 14 
XH9 C08  C12 C  0 1 N N N N N N -23.754 -4.115 -26.751 -0.058 -1.797 -0.122 C08  XH9 15 
XH9 C09  C13 C  0 1 N N N N N N -22.855 -4.909 -25.802 -1.201 -1.040 0.576  C09  XH9 16 
XH9 C11  C14 C  0 1 N N N N N N -20.979 -5.196 -27.464 0.494  0.706  1.388  C11  XH9 17 
XH9 C14  C15 C  0 1 Y N N N N N -18.920 -4.934 -25.283 -3.034 1.015  0.081  C14  XH9 18 
XH9 C16  C16 C  0 1 Y N N N N N -17.004 -6.366 -25.392 -5.012 -0.322 -0.029 C16  XH9 19 
XH9 CL17 CL1 CL 0 0 N N N N N N -16.320 -8.008 -25.386 -5.990 -1.645 0.525  CL17 XH9 20 
XH9 C18  C17 C  0 1 Y N N N N N -16.203 -5.236 -25.533 -5.450 0.486  -1.065 C18  XH9 21 
XH9 N19  N4  N  0 1 Y N N N N N -16.743 -4.031 -25.554 -4.718 1.496  -1.496 N19  XH9 22 
XH9 O21  O1  O  0 1 N N N N N N -20.816 -4.600 -23.906 -1.445 2.481  0.968  O21  XH9 23 
XH9 C23  C18 C  0 1 Y N N N N N -21.623 -5.006 -32.942 5.737  1.824  0.174  C23  XH9 24 
XH9 C25  C19 C  0 1 Y N N N N N -21.604 -2.648 -33.418 6.015  -0.509 0.642  C25  XH9 25 
XH9 H101 H1  H  0 0 N N N N N N -20.580 -3.926 -29.165 2.381  1.418  0.589  H101 XH9 26 
XH9 H102 H2  H  0 0 N N N N N N -21.319 -3.084 -27.762 0.985  1.688  -0.481 H102 XH9 27 
XH9 H151 H3  H  0 0 N N N N N N -19.023 -7.080 -25.128 -3.418 -0.679 1.368  H151 XH9 28 
XH9 H201 H4  H  0 0 N N N N N N -18.466 -2.842 -25.403 -2.979 2.619  -1.345 H201 XH9 29 
XH9 H221 H5  H  0 0 N N N N N N -22.367 -5.589 -31.013 4.021  2.363  -0.982 H221 XH9 30 
XH9 H241 H6  H  0 0 N N N N N N -20.953 -4.157 -34.793 7.362  1.010  1.301  H241 XH9 31 
XH9 H051 H7  H  0 0 N N N N N N -23.967 -3.009 -29.840 2.638  0.800  -2.082 H051 XH9 32 
XH9 H052 H8  H  0 0 N N N N N N -22.405 -2.217 -29.441 2.992  -0.942 -2.004 H052 XH9 33 
XH9 H072 H10 H  0 0 N N N N N N -23.812 -5.560 -28.310 -0.094 -0.139 -1.475 H072 XH9 34 
XH9 H071 H11 H  0 0 N N N N N N -24.588 -3.988 -28.703 0.978  -1.473 -1.967 H071 XH9 35 
XH9 H082 H12 H  0 0 N N N N N N -23.472 -3.056 -26.659 -0.463 -2.667 -0.640 H082 XH9 36 
XH9 H081 H13 H  0 0 N N N N N N -24.791 -4.250 -26.409 0.669  -2.122 0.622  H081 XH9 37 
XH9 H092 H14 H  0 0 N N N N N N -22.964 -4.468 -24.800 -1.451 -1.550 1.506  H092 XH9 38 
XH9 H091 H15 H  0 0 N N N N N N -23.224 -5.945 -25.789 -2.076 -1.035 -0.074 H091 XH9 39 
XH9 H111 H16 H  0 0 N N N N N N -21.464 -6.103 -27.853 0.884  -0.118 1.985  H111 XH9 40 
XH9 H112 H17 H  0 0 N N N N N N -19.888 -5.335 -27.463 0.413  1.597  2.009  H112 XH9 41 
XH9 H181 H18 H  0 0 N N N N N N -15.133 -5.346 -25.626 -6.405 0.287  -1.527 H181 XH9 42 
XH9 H231 H19 H  0 0 N N N N N N -21.431 -6.021 -33.256 6.085  2.841  0.267  H231 XH9 43 
XH9 H251 H20 H  0 0 N N N N N N -21.419 -1.830 -34.099 6.579  -1.312 1.092  H251 XH9 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XH9 C02  N01  TRIP N N 1  
XH9 C03  C02  SING N N 2  
XH9 C04  C03  DOUB Y N 3  
XH9 N06  C05  SING N N 4  
XH9 C08  C07  SING N N 5  
XH9 C09  C08  SING N N 6  
XH9 C07  N06  SING N N 7  
XH9 C10  N06  SING N N 8  
XH9 C11  C10  SING N N 9  
XH9 N12  C11  SING N N 10 
XH9 C13  N12  SING N N 11 
XH9 C15  C14  DOUB Y N 12 
XH9 C16  C15  SING Y N 13 
XH9 CL17 C16  SING N N 14 
XH9 C18  C16  DOUB Y N 15 
XH9 N19  C18  SING Y N 16 
XH9 C20  N19  DOUB Y N 17 
XH9 C14  C13  SING N N 18 
XH9 O21  C13  DOUB N N 19 
XH9 C05  C04  SING N N 20 
XH9 C22  C04  SING Y N 21 
XH9 C23  C22  DOUB Y N 22 
XH9 C24  C23  SING Y N 23 
XH9 C25  C24  DOUB Y N 24 
XH9 C03  C25  SING Y N 25 
XH9 C09  N12  SING N N 26 
XH9 C14  C20  SING Y N 27 
XH9 C10  H101 SING N N 28 
XH9 C10  H102 SING N N 29 
XH9 C15  H151 SING N N 30 
XH9 C20  H201 SING N N 31 
XH9 C22  H221 SING N N 32 
XH9 C24  H241 SING N N 33 
XH9 C05  H051 SING N N 34 
XH9 C05  H052 SING N N 35 
XH9 C07  H072 SING N N 36 
XH9 C07  H071 SING N N 37 
XH9 C08  H082 SING N N 38 
XH9 C08  H081 SING N N 39 
XH9 C09  H092 SING N N 40 
XH9 C09  H091 SING N N 41 
XH9 C11  H111 SING N N 42 
XH9 C11  H112 SING N N 43 
XH9 C18  H181 SING N N 44 
XH9 C23  H231 SING N N 45 
XH9 C25  H251 SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XH9 InChI            InChI                1.06  "InChI=1S/C19H19ClN4O/c20-18-10-17(12-22-13-18)19(25)24-7-3-6-23(8-9-24)14-16-5-2-1-4-15(16)11-21/h1-2,4-5,10,12-13H,3,6-9,14H2" 
XH9 InChIKey         InChI                1.06  VIHXPVLCTFBBEL-UHFFFAOYSA-N                                                                                                      
XH9 SMILES_CANONICAL CACTVS               3.385 "Clc1cncc(c1)C(=O)N2CCCN(CC2)Cc3ccccc3C#N"                                                                                       
XH9 SMILES           CACTVS               3.385 "Clc1cncc(c1)C(=O)N2CCCN(CC2)Cc3ccccc3C#N"                                                                                       
XH9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)CN2CCCN(CC2)C(=O)c3cc(cnc3)Cl)C#N"                                                                                   
XH9 SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)CN2CCCN(CC2)C(=O)c3cc(cnc3)Cl)C#N"                                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           XH9 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-[[4-(5-chloranylpyridin-3-yl)carbonyl-1,4-diazepan-1-yl]methyl]benzenecarbonitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XH9 "Create component" 2023-11-02 PDBE 
XH9 "Initial release"  2024-02-07 RCSB 
# 
