data_XC9
# 
_chem_comp.id                                    XC9 
_chem_comp.name                                  "1-[6-[azanylidene-[[azanylidene-[[(4-chlorophenyl)amino]methyl]-$l^{4}-azanyl]methyl]-$l^{4}-azanyl]hexyl]-3-[~{N}-(4-chlorophenyl)carbamimidoyl]guanidine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H30 Cl2 N10" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-11-11 
_chem_comp.pdbx_modified_date                    2023-02-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        505.447 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XC9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8F4A 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XC9 CL2 CL1 CL 0 0 N N N 21.613 -15.098 32.193 -12.080 3.009  -0.142 CL2 XC9 1  
XC9 C10 C1  C  0 1 N N N 18.488 -7.628  38.169 0.214   -1.907 -0.072 C10 XC9 2  
XC9 C11 C2  C  0 1 N N N 17.305 -8.082  37.319 -1.134  -2.620 0.045  C11 XC9 3  
XC9 C12 C3  C  0 1 N N N 17.463 -9.491  36.763 -2.264  -1.591 -0.035 C12 XC9 4  
XC9 N6  N1  N  0 1 N N N 17.030 -10.520 37.758 -3.555  -2.274 0.077  N6  XC9 5  
XC9 C13 C4  C  0 1 N N N 17.884 -11.409 38.262 -4.722  -1.549 0.032  C13 XC9 6  
XC9 N7  N2  N  0 1 N N N 17.579 -12.066 39.394 -4.680  -0.255 -0.110 N7  XC9 7  
XC9 N8  N3  N  0 1 N N N 19.015 -11.740 37.639 -5.938  -2.192 0.138  N8  XC9 8  
XC9 C14 C5  C  0 1 N N N 20.273 -11.681 38.062 -7.102  -1.457 0.225  C14 XC9 9  
XC9 N9  N4  N  0 1 N N N 20.625 -11.197 39.260 -8.241  -2.060 0.415  N9  XC9 10 
XC9 N10 N5  N  0 1 N N N 21.304 -12.055 37.263 -7.060  -0.086 0.112  N10 XC9 11 
XC9 C15 C6  C  0 1 Y N N 21.324 -12.793 36.049 -8.250  0.648  0.051  C15 XC9 12 
XC9 C16 C7  C  0 1 Y N N 22.556 -13.250 35.594 -8.339  1.881  0.683  C16 XC9 13 
XC9 C17 C8  C  0 1 Y N N 22.652 -13.960 34.410 -9.514  2.604  0.622  C17 XC9 14 
XC9 C18 C9  C  0 1 Y N N 21.513 -14.204 33.680 -10.603 2.099  -0.068 C18 XC9 15 
XC9 C19 C10 C  0 1 Y N N 20.284 -13.753 34.101 -10.517 0.870  -0.698 C19 XC9 16 
XC9 C20 C11 C  0 1 Y N N 20.189 -13.042 35.284 -9.342  0.146  -0.645 C20 XC9 17 
XC9 H1  H1  H  0 1 N N N 18.381 -6.953  39.031 0.267   -1.383 -1.027 H1  XC9 18 
XC9 H2  H2  H  0 1 N N N 19.407 -8.222  38.280 0.318   -1.190 0.742  H2  XC9 19 
XC9 H4  H4  H  0 1 N N N 17.194 -7.385  36.475 -1.238  -3.337 -0.770 H4  XC9 20 
XC9 H5  H5  H  0 1 N N N 16.398 -8.052  37.940 -1.186  -3.144 0.999  H5  XC9 21 
XC9 H6  H6  H  0 1 N N N 16.849 -9.589  35.856 -2.160  -0.874 0.780  H6  XC9 22 
XC9 H7  H7  H  0 1 N N N 18.520 -9.660  36.510 -2.212  -1.067 -0.989 H7  XC9 23 
XC9 H8  H8  H  0 1 N N N 16.075 -10.541 38.053 -3.586  -3.238 0.183  H8  XC9 24 
XC9 H9  H9  H  0 1 N N N 16.686 -11.796 39.755 -3.825  0.197  -0.184 H9  XC9 25 
XC9 H10 H10 H  0 1 N N N 18.898 -12.087 36.708 -5.975  -3.162 0.150  H10 XC9 26 
XC9 H11 H11 H  0 1 N N N 19.833 -10.890 39.788 -8.263  -3.018 0.568  H11 XC9 27 
XC9 H12 H12 H  0 1 N N N 22.204 -11.761 37.584 -6.206  0.371  0.073  H12 XC9 28 
XC9 H13 H13 H  0 1 N N N 23.447 -13.049 36.170 -7.490  2.276  1.221  H13 XC9 29 
XC9 H14 H14 H  0 1 N N N 23.610 -14.318 34.064 -9.584  3.563  1.113  H14 XC9 30 
XC9 H15 H15 H  0 1 N N N 19.400 -13.952 33.513 -11.368 0.478  -1.235 H15 XC9 31 
XC9 H16 H16 H  0 1 N N N 19.228 -12.678 35.616 -9.275  -0.813 -1.137 H16 XC9 32 
XC9 C1  C12 C  0 1 N N N ?      ?       ?      1.344   -2.936 0.007  C1  XC9 33 
XC9 C2  C13 C  0 1 N N N ?      ?       ?      2.693   -2.223 -0.110 C2  XC9 34 
XC9 C3  C14 C  0 1 N N N ?      ?       ?      3.822   -3.251 -0.030 C3  XC9 35 
XC9 N1  N6  N  0 1 N N N ?      ?       ?      5.113   -2.569 -0.142 N1  XC9 36 
XC9 C4  C15 C  0 1 N N N ?      ?       ?      6.280   -3.293 -0.097 C4  XC9 37 
XC9 N2  N7  N  0 1 N N N ?      ?       ?      7.496   -2.642 -0.054 N2  XC9 38 
XC9 C5  C16 C  0 1 N N N ?      ?       ?      7.538   -1.269 0.073  C5  XC9 39 
XC9 N3  N8  N  0 1 N N N ?      ?       ?      8.739   -0.605 -0.032 N3  XC9 40 
XC9 C6  C17 C  0 1 Y N N ?      ?       ?      8.768   0.794  -0.031 C6  XC9 41 
XC9 C7  C18 C  0 1 Y N N ?      ?       ?      9.734   1.469  0.703  C7  XC9 42 
XC9 C8  C19 C  0 1 Y N N ?      ?       ?      9.760   2.850  0.702  C8  XC9 43 
XC9 C9  C20 C  0 1 Y N N ?      ?       ?      8.825   3.560  -0.030 C9  XC9 44 
XC9 C21 C21 C  0 1 Y N N ?      ?       ?      7.861   2.890  -0.762 C21 XC9 45 
XC9 C22 C22 C  0 1 Y N N ?      ?       ?      7.833   1.509  -0.769 C22 XC9 46 
XC9 CL1 CL2 CL 0 0 N N N ?      ?       ?      8.861   5.296  -0.029 CL1 XC9 47 
XC9 H3  H3  H  0 1 N N N ?      ?       ?      1.292   -3.460 0.961  H3  XC9 48 
XC9 H17 H17 H  0 1 N N N ?      ?       ?      1.240   -3.653 -0.807 H17 XC9 49 
XC9 H18 H18 H  0 1 N N N ?      ?       ?      2.745   -1.699 -1.064 H18 XC9 50 
XC9 H19 H19 H  0 1 N N N ?      ?       ?      2.796   -1.506 0.705  H19 XC9 51 
XC9 H20 H20 H  0 1 N N N ?      ?       ?      3.770   -3.776 0.924  H20 XC9 52 
XC9 H21 H21 H  0 1 N N N ?      ?       ?      3.718   -3.968 -0.845 H21 XC9 53 
XC9 H26 H26 H  0 1 N N N ?      ?       ?      9.566   -1.107 -0.106 H26 XC9 54 
XC9 H27 H27 H  0 1 N N N ?      ?       ?      10.464  0.915  1.275  H27 XC9 55 
XC9 H28 H28 H  0 1 N N N ?      ?       ?      10.511  3.376  1.273  H28 XC9 56 
XC9 H29 H29 H  0 1 N N N ?      ?       ?      7.131   3.447  -1.332 H29 XC9 57 
XC9 H30 H30 H  0 1 N N N ?      ?       ?      7.081   0.986  -1.340 H30 XC9 58 
XC9 N4  N9  N  0 1 N N N ?      ?       ?      6.239   -4.595 -0.096 N4  XC9 59 
XC9 N5  N10 N  0 1 N N N ?      ?       ?      6.442   -0.601 0.291  N5  XC9 60 
XC9 H31 H31 H  0 1 N N N ?      ?       ?      5.145   -1.605 -0.248 H31 XC9 61 
XC9 H22 H22 H  0 1 N N N ?      ?       ?      8.320   -3.150 -0.112 H22 XC9 62 
XC9 H23 H23 H  0 1 N N N ?      ?       ?      7.056   -5.107 0.010  H23 XC9 63 
XC9 H24 H24 H  0 1 N N N ?      ?       ?      6.468   0.367  0.355  H24 XC9 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XC9 CL2 C18 SING N N 1  
XC9 C18 C19 DOUB Y N 2  
XC9 C18 C17 SING Y N 3  
XC9 C19 C20 SING Y N 4  
XC9 C17 C16 DOUB Y N 5  
XC9 C20 C15 DOUB Y N 6  
XC9 C16 C15 SING Y N 7  
XC9 C15 N10 SING N N 8  
XC9 C12 C11 SING N N 9  
XC9 C12 N6  SING N N 10 
XC9 N10 C14 SING N N 11 
XC9 C11 C10 SING N N 12 
XC9 N8  C14 SING N N 13 
XC9 N8  C13 SING N N 14 
XC9 N6  C13 SING N N 15 
XC9 C14 N9  DOUB N N 16 
XC9 C13 N7  DOUB N N 17 
XC9 C10 H1  SING N N 18 
XC9 C10 H2  SING N N 19 
XC9 C11 H4  SING N N 20 
XC9 C11 H5  SING N N 21 
XC9 C12 H6  SING N N 22 
XC9 C12 H7  SING N N 23 
XC9 N6  H8  SING N N 24 
XC9 N7  H9  SING N N 25 
XC9 N8  H10 SING N N 26 
XC9 N9  H11 SING N N 27 
XC9 N10 H12 SING N N 28 
XC9 C16 H13 SING N N 29 
XC9 C17 H14 SING N N 30 
XC9 C19 H15 SING N N 31 
XC9 C20 H16 SING N N 32 
XC9 C10 C1  SING N N 33 
XC9 C1  C2  SING N N 34 
XC9 C2  C3  SING N N 35 
XC9 C3  N1  SING N N 36 
XC9 N1  C4  SING N N 37 
XC9 C4  N2  SING N N 38 
XC9 N2  C5  SING N N 39 
XC9 C5  N3  SING N N 40 
XC9 N3  C6  SING N N 41 
XC9 C6  C7  SING Y N 42 
XC9 C7  C8  DOUB Y N 43 
XC9 C8  C9  SING Y N 44 
XC9 C9  C21 DOUB Y N 45 
XC9 C21 C22 SING Y N 46 
XC9 C22 C6  DOUB Y N 47 
XC9 C9  CL1 SING N N 48 
XC9 C1  H3  SING N N 49 
XC9 C1  H17 SING N N 50 
XC9 C2  H18 SING N N 51 
XC9 C2  H19 SING N N 52 
XC9 C3  H20 SING N N 53 
XC9 C3  H21 SING N N 54 
XC9 N3  H26 SING N N 55 
XC9 C7  H27 SING N N 56 
XC9 C8  H28 SING N N 57 
XC9 C21 H29 SING N N 58 
XC9 C22 H30 SING N N 59 
XC9 C4  N4  DOUB N N 60 
XC9 C5  N5  DOUB N N 61 
XC9 N1  H31 SING N N 62 
XC9 N2  H22 SING N N 63 
XC9 N4  H23 SING N N 64 
XC9 N5  H24 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XC9 SMILES           ACDLabs              12.01 "Clc1ccc(NC(=N)NC(=N)NCCCCCCNC(=N)NC(=N)Nc2ccc(Cl)cc2)cc1"                                                                                                                            
XC9 InChI            InChI                1.06  "InChI=1S/C22H30Cl2N10/c23-15-5-9-17(10-6-15)31-21(27)33-19(25)29-13-3-1-2-4-14-30-20(26)34-22(28)32-18-11-7-16(24)8-12-18/h5-12H,1-4,13-14H2,(H5,25,27,29,31,33)(H5,26,28,30,32,34)" 
XC9 InChIKey         InChI                1.06  GHXZTYHSJHQHIJ-UHFFFAOYSA-N                                                                                                                                                           
XC9 SMILES_CANONICAL CACTVS               3.385 "Clc1ccc(NC(=N)NC(=N)NCCCCCCNC(=N)NC(=N)Nc2ccc(Cl)cc2)cc1"                                                                                                                            
XC9 SMILES           CACTVS               3.385 "Clc1ccc(NC(=N)NC(=N)NCCCCCCNC(=N)NC(=N)Nc2ccc(Cl)cc2)cc1"                                                                                                                            
XC9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\NCCCCCCNC(=N)NC(=N)Nc1ccc(cc1)Cl)/N/C(=N\[H])/Nc2ccc(cc2)Cl"                                                                                                                
XC9 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1NC(=N)NC(=N)NCCCCCCNC(=N)NC(=N)Nc2ccc(cc2)Cl)Cl"                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XC9 "SYSTEMATIC NAME" ACDLabs              12.01 
;N,N''''-hexane-1,6-diylbis[N'-(4-chlorophenyl)triimidodicarbonic diamide]
;
XC9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-(4-chlorophenyl)-3-[~{N}-[6-[[~{N}-[~{N}-(4-chlorophenyl)carbamimidoyl]carbamimidoyl]amino]hexyl]carbamimidoyl]guanidine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XC9 "Create component" 2022-11-11 RCSB 
XC9 "Initial release"  2023-02-08 RCSB 
# 
