data_WZ9
# 
_chem_comp.id                                    WZ9 
_chem_comp.name                                  "7-azanyl-3-(phenylmethyl)-1~{H}-benzimidazol-2-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H13 N3 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-17 
_chem_comp.pdbx_modified_date                    2024-03-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        239.273 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WZ9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8QVA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WZ9 C13 C1  C 0 1 Y N N N N N -31.329 -4.515 3.127  2.224  0.063  -0.557 C13 WZ9 1  
WZ9 C15 C2  C 0 1 Y N N N N N -33.109 -6.147 2.952  4.021  -0.439 0.944  C15 WZ9 2  
WZ9 C17 C3  C 0 1 Y N N N N N -33.480 -3.904 2.085  3.357  1.834  0.589  C17 WZ9 3  
WZ9 N01 N1  N 0 1 N N N N N N -26.924 -3.660 -1.824 -4.231 -0.359 1.285  N01 WZ9 4  
WZ9 C02 C4  C 0 1 Y N N N N N -27.658 -4.522 -0.855 -3.231 0.299  0.560  C02 WZ9 5  
WZ9 C03 C5  C 0 1 Y N N N N N -27.924 -5.860 -1.103 -3.379 1.637  0.226  C03 WZ9 6  
WZ9 C04 C6  C 0 1 Y N N N N N -28.583 -6.620 -0.079 -2.391 2.289  -0.491 C04 WZ9 7  
WZ9 C05 C7  C 0 1 Y N N N N N -29.027 -6.049 1.138  -1.250 1.614  -0.878 C05 WZ9 8  
WZ9 C06 C8  C 0 1 Y N N N N N -28.774 -4.712 1.343  -1.091 0.274  -0.550 C06 WZ9 9  
WZ9 C07 C9  C 0 1 Y N N N N N -28.104 -3.975 0.380  -2.081 -0.385 0.176  C07 WZ9 10 
WZ9 N08 N2  N 0 1 N N N N N N -28.031 -2.622 0.909  -1.642 -1.697 0.358  N08 WZ9 11 
WZ9 C09 C10 C 0 1 N N N N N N -28.624 -2.516 2.187  -0.437 -1.825 -0.228 C09 WZ9 12 
WZ9 O10 O1  O 0 1 N N N N N N -28.713 -1.536 2.884  0.226  -2.845 -0.254 O10 WZ9 13 
WZ9 N11 N3  N 0 1 N N N N N N -29.106 -3.805 2.454  -0.082 -0.655 -0.793 N11 WZ9 14 
WZ9 C12 C11 C 0 1 N N N N N N -29.876 -4.214 3.616  1.162  -0.398 -1.522 C12 WZ9 15 
WZ9 C14 C12 C 0 1 Y N N N N N -31.821 -5.789 3.339  3.047  -0.861 0.058  C14 WZ9 16 
WZ9 C16 C13 C 0 1 Y N N N N N -33.944 -5.216 2.321  4.172  0.909  1.214  C16 WZ9 17 
WZ9 C18 C14 C 0 1 Y N N N N N -32.172 -3.559 2.482  2.379  1.411  -0.291 C18 WZ9 18 
WZ9 H1  H1  H 0 1 N N N N N N -33.467 -7.149 3.139  4.664  -1.161 1.425  H1  WZ9 19 
WZ9 H2  H2  H 0 1 N N N N N N -34.118 -3.175 1.607  3.474  2.887  0.800  H2  WZ9 20 
WZ9 H3  H3  H 0 1 N N N N N N -26.840 -2.736 -1.452 -4.124 -1.293 1.521  H3  WZ9 21 
WZ9 H4  H4  H 0 1 N N N N N N -26.012 -4.039 -1.983 -5.031 0.120  1.551  H4  WZ9 22 
WZ9 H5  H5  H 0 1 N N N N N N -27.643 -6.317 -2.040 -4.268 2.172  0.526  H5  WZ9 23 
WZ9 H6  H6  H 0 1 N N N N N N -28.747 -7.675 -0.244 -2.512 3.331  -0.748 H6  WZ9 24 
WZ9 H7  H7  H 0 1 N N N N N N -29.545 -6.641 1.878  -0.482 2.128  -1.438 H7  WZ9 25 
WZ9 H8  H8  H 0 1 N N N N N N -27.610 -1.855 0.424  -2.123 -2.398 0.826  H8  WZ9 26 
WZ9 H9  H9  H 0 1 N N N N N N -29.434 -5.117 4.062  0.991  0.376  -2.271 H9  WZ9 27 
WZ9 H10 H10 H 0 1 N N N N N N -29.890 -3.406 4.362  1.491  -1.313 -2.014 H10 WZ9 28 
WZ9 H11 H11 H 0 1 N N N N N N -31.191 -6.525 3.817  2.929  -1.914 -0.152 H11 WZ9 29 
WZ9 H12 H12 H 0 1 N N N N N N -34.940 -5.501 2.016  4.936  1.239  1.902  H12 WZ9 30 
WZ9 H13 H13 H 0 1 N N N N N N -31.803 -2.561 2.296  1.736  2.134  -0.772 H13 WZ9 31 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WZ9 N01 C02 SING N N 1  
WZ9 C03 C02 DOUB Y N 2  
WZ9 C03 C04 SING Y N 3  
WZ9 C02 C07 SING Y N 4  
WZ9 C04 C05 DOUB Y N 5  
WZ9 C07 N08 SING N N 6  
WZ9 C07 C06 DOUB Y N 7  
WZ9 N08 C09 SING N N 8  
WZ9 C05 C06 SING Y N 9  
WZ9 C06 N11 SING N N 10 
WZ9 C17 C16 DOUB Y N 11 
WZ9 C17 C18 SING Y N 12 
WZ9 C09 N11 SING N N 13 
WZ9 C09 O10 DOUB N N 14 
WZ9 C16 C15 SING Y N 15 
WZ9 N11 C12 SING N N 16 
WZ9 C18 C13 DOUB Y N 17 
WZ9 C15 C14 DOUB Y N 18 
WZ9 C13 C14 SING Y N 19 
WZ9 C13 C12 SING N N 20 
WZ9 C15 H1  SING N N 21 
WZ9 C17 H2  SING N N 22 
WZ9 N01 H3  SING N N 23 
WZ9 N01 H4  SING N N 24 
WZ9 C03 H5  SING N N 25 
WZ9 C04 H6  SING N N 26 
WZ9 C05 H7  SING N N 27 
WZ9 N08 H8  SING N N 28 
WZ9 C12 H9  SING N N 29 
WZ9 C12 H10 SING N N 30 
WZ9 C14 H11 SING N N 31 
WZ9 C16 H12 SING N N 32 
WZ9 C18 H13 SING N N 33 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WZ9 InChI            InChI                1.06  "InChI=1S/C14H13N3O/c15-11-7-4-8-12-13(11)16-14(18)17(12)9-10-5-2-1-3-6-10/h1-8H,9,15H2,(H,16,18)" 
WZ9 InChIKey         InChI                1.06  RSMYBWVNPVYYCQ-UHFFFAOYSA-N                                                                        
WZ9 SMILES_CANONICAL CACTVS               3.385 "Nc1cccc2N(Cc3ccccc3)C(=O)Nc12"                                                                    
WZ9 SMILES           CACTVS               3.385 "Nc1cccc2N(Cc3ccccc3)C(=O)Nc12"                                                                    
WZ9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CN2c3cccc(c3NC2=O)N"                                                                    
WZ9 SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CN2c3cccc(c3NC2=O)N"                                                                    
# 
_pdbx_chem_comp_identifier.comp_id           WZ9 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "7-azanyl-3-(phenylmethyl)-1~{H}-benzimidazol-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WZ9 "Create component" 2023-10-17 PDBE 
WZ9 "Initial release"  2024-03-27 RCSB 
# 
