data_WY9
# 
_chem_comp.id                                    WY9 
_chem_comp.name                                  "(5R)-5-ethyl-3-[6-(3-methoxy-4-methyl-phenoxy)pyridin-3-yl]imidazolidine-2,4-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H19 N3 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-17 
_chem_comp.pdbx_modified_date                    2024-03-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        341.361 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WY9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8QUC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WY9 C4  C1  C 0 1 N N N N N N 161.806 134.607 155.738 -4.048 -0.960 0.391  C4  WY9 1  
WY9 C5  C2  C 0 1 Y N N N N N 161.287 134.008 153.332 -1.655 -0.697 0.119  C5  WY9 2  
WY9 C8  C3  C 0 1 Y N N N N N 161.089 134.521 150.702 0.911  -1.590 -0.071 C8  WY9 3  
WY9 N3  N1  N 0 1 Y N N N N N 160.009 134.090 151.310 0.630  -0.316 -0.288 N3  WY9 4  
WY9 C2  C4  C 0 1 N N N N N N 162.722 131.564 156.879 -5.433 1.755  -0.997 C2  WY9 5  
WY9 N1  N2  N 0 1 N N N N N N 162.045 133.888 156.835 -5.182 -0.238 0.439  N1  WY9 6  
WY9 C6  C5  C 0 1 Y N N N N N 162.399 134.468 152.661 -1.398 -2.047 0.349  C6  WY9 7  
WY9 C1  C6  C 0 1 N N N N N N 162.491 130.439 157.861 -6.937 1.924  -0.772 C1  WY9 8  
WY9 C10 C7  C 0 1 Y N N N N N 158.919 135.634 148.643 3.747  -0.978 -1.643 C10 WY9 9  
WY9 C11 C8  C 0 1 Y N N N N N 157.766 135.482 147.895 4.731  -0.035 -1.866 C11 WY9 10 
WY9 C12 C9  C 0 1 Y N N N N N 157.546 134.349 147.123 5.141  0.795  -0.840 C12 WY9 11 
WY9 C13 C10 C 0 1 N N N N N N 156.304 134.189 146.312 6.214  1.824  -1.086 C13 WY9 12 
WY9 C14 C11 C 0 1 Y N N N N N 158.536 133.350 147.125 4.565  0.682  0.418  C14 WY9 13 
WY9 C15 C12 C 0 1 N N N N N N 158.973 131.058 146.644 4.333  1.327  2.694  C15 WY9 14 
WY9 C16 C13 C 0 1 Y N N N N N 159.691 133.494 147.867 3.577  -0.264 0.644  C16 WY9 15 
WY9 C17 C14 C 0 1 Y N N N N N 160.107 133.829 152.625 -0.603 0.146  -0.203 C17 WY9 16 
WY9 C18 C15 C 0 1 N N N N N N 160.993 132.522 155.333 -3.285 1.108  0.115  C18 WY9 17 
WY9 C3  C16 C 0 1 N N R N N N 161.544 132.524 156.745 -4.792 1.171  0.264  C3  WY9 18 
WY9 C7  C17 C 0 1 Y N N N N N 162.306 134.731 151.310 -0.093 -2.494 0.251  C7  WY9 19 
WY9 C9  C18 C 0 1 Y N N N N N 159.861 134.634 148.622 3.163  -1.091 -0.388 C9  WY9 20 
WY9 N2  N3  N 0 1 N N N N N N 161.350 133.722 154.737 -2.964 -0.198 0.206  N2  WY9 21 
WY9 O1  O1  O 0 1 N N N N N N 161.947 135.799 155.611 -4.012 -2.170 0.508  O1  WY9 22 
WY9 O2  O2  O 0 1 N N N N N N 161.037 134.788 149.368 2.195  -2.019 -0.170 O2  WY9 23 
WY9 O3  O3  O 0 1 N N N N N N 158.275 132.261 146.354 4.969  1.498  1.426  O3  WY9 24 
WY9 O4  O4  O 0 1 N N N N N N 160.354 131.644 154.812 -2.525 2.038  -0.053 O4  WY9 25 
WY9 H1  H1  H 0 1 N N N N N N 162.924 131.124 155.891 -5.265 1.080  -1.836 H1  WY9 26 
WY9 H2  H2  H 0 1 N N N N N N 163.600 132.138 157.211 -4.988 2.725  -1.215 H2  WY9 27 
WY9 H3  H3  H 0 1 N N N N N N 162.520 134.249 157.638 -6.082 -0.579 0.564  H3  WY9 28 
WY9 H4  H4  H 0 1 N N N N N N 163.331 134.621 153.186 -2.198 -2.728 0.598  H4  WY9 29 
WY9 H5  H5  H 0 1 N N N N N N 163.382 129.796 157.899 -7.394 2.339  -1.670 H5  WY9 30 
WY9 H6  H6  H 0 1 N N N N N N 162.299 130.858 158.860 -7.383 0.953  -0.553 H6  WY9 31 
WY9 H7  H7  H 0 1 N N N N N N 161.623 129.844 157.540 -7.106 2.598  0.067  H7  WY9 32 
WY9 H8  H8  H 0 1 N N N N N N 159.077 136.524 149.234 3.428  -1.626 -2.446 H8  WY9 33 
WY9 H9  H9  H 0 1 N N N N N N 157.020 136.262 147.912 5.181  0.054  -2.843 H9  WY9 34 
WY9 H10 H10 H 0 1 N N N N N N 155.532 133.691 146.917 7.191  1.387  -0.878 H10 WY9 35 
WY9 H11 H11 H 0 1 N N N N N N 155.941 135.179 145.998 6.175  2.147  -2.127 H11 WY9 36 
WY9 H12 H12 H 0 1 N N N N N N 156.523 133.580 145.423 6.053  2.681  -0.433 H12 WY9 37 
WY9 H13 H13 H 0 1 N N N N N N 158.658 130.272 145.941 3.261  1.499  2.589  H13 WY9 38 
WY9 H14 H14 H 0 1 N N N N N N 160.055 131.228 146.543 4.504  0.312  3.052  H14 WY9 39 
WY9 H15 H15 H 0 1 N N N N N N 158.747 130.742 147.673 4.747  2.039  3.408  H15 WY9 40 
WY9 H16 H16 H 0 1 N N N N N N 160.449 132.725 147.856 3.128  -0.353 1.622  H16 WY9 41 
WY9 H17 H17 H 0 1 N N N N N N 159.235 133.467 153.150 -0.794 1.193  -0.387 H17 WY9 42 
WY9 H18 H18 H 0 1 N N N N N N 160.761 132.310 157.488 -5.066 1.757  1.141  H18 WY9 43 
WY9 H19 H19 H 0 1 N N N N N N 163.157 135.089 150.750 0.144  -3.533 0.428  H19 WY9 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WY9 C13 C12 SING N N 1  
WY9 O3  C15 SING N N 2  
WY9 O3  C14 SING N N 3  
WY9 C12 C14 DOUB Y N 4  
WY9 C12 C11 SING Y N 5  
WY9 C14 C16 SING Y N 6  
WY9 C16 C9  DOUB Y N 7  
WY9 C11 C10 DOUB Y N 8  
WY9 C9  C10 SING Y N 9  
WY9 C9  O2  SING N N 10 
WY9 O2  C8  SING N N 11 
WY9 C8  N3  DOUB Y N 12 
WY9 C8  C7  SING Y N 13 
WY9 N3  C17 SING Y N 14 
WY9 C7  C6  DOUB Y N 15 
WY9 C17 C5  DOUB Y N 16 
WY9 C6  C5  SING Y N 17 
WY9 C5  N2  SING N N 18 
WY9 N2  C18 SING N N 19 
WY9 N2  C4  SING N N 20 
WY9 O4  C18 DOUB N N 21 
WY9 C18 C3  SING N N 22 
WY9 O1  C4  DOUB N N 23 
WY9 C4  N1  SING N N 24 
WY9 C3  N1  SING N N 25 
WY9 C3  C2  SING N N 26 
WY9 C2  C1  SING N N 27 
WY9 C2  H1  SING N N 28 
WY9 C2  H2  SING N N 29 
WY9 N1  H3  SING N N 30 
WY9 C6  H4  SING N N 31 
WY9 C1  H5  SING N N 32 
WY9 C1  H6  SING N N 33 
WY9 C1  H7  SING N N 34 
WY9 C10 H8  SING N N 35 
WY9 C11 H9  SING N N 36 
WY9 C13 H10 SING N N 37 
WY9 C13 H11 SING N N 38 
WY9 C13 H12 SING N N 39 
WY9 C15 H13 SING N N 40 
WY9 C15 H14 SING N N 41 
WY9 C15 H15 SING N N 42 
WY9 C16 H16 SING N N 43 
WY9 C17 H17 SING N N 44 
WY9 C3  H18 SING N N 45 
WY9 C7  H19 SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WY9 InChI            InChI                1.06  "InChI=1S/C18H19N3O4/c1-4-14-17(22)21(18(23)20-14)12-6-8-16(19-10-12)25-13-7-5-11(2)15(9-13)24-3/h5-10,14H,4H2,1-3H3,(H,20,23)/t14-/m1/s1" 
WY9 InChIKey         InChI                1.06  AMAOXEGBJHLCSF-CQSZACIVSA-N                                                                                                                
WY9 SMILES_CANONICAL CACTVS               3.385 "CC[C@H]1NC(=O)N(C1=O)c2ccc(Oc3ccc(C)c(OC)c3)nc2"                                                                                          
WY9 SMILES           CACTVS               3.385 "CC[CH]1NC(=O)N(C1=O)c2ccc(Oc3ccc(C)c(OC)c3)nc2"                                                                                           
WY9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@@H]1C(=O)N(C(=O)N1)c2ccc(nc2)Oc3ccc(c(c3)OC)C"                                                                                       
WY9 SMILES           "OpenEye OEToolkits" 2.0.7 "CCC1C(=O)N(C(=O)N1)c2ccc(nc2)Oc3ccc(c(c3)OC)C"                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           WY9 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(5~{R})-5-ethyl-3-[6-(3-methoxy-4-methyl-phenoxy)pyridin-3-yl]imidazolidine-2,4-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WY9 "Create component" 2023-10-17 PDBE 
WY9 "Initial release"  2024-04-03 RCSB 
# 
