data_WV9
# 
_chem_comp.id                                    WV9 
_chem_comp.name                                  "(2R,3R,4R,5S)-2-(hydroxymethyl)-1-{5-[4-(2-methoxyethyl)phenyl]pentyl}piperidine-3,4,5-triol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H33 N O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-10-20 
_chem_comp.pdbx_modified_date                    2023-02-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        367.480 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WV9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8EUX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WV9 N1  N1  N 0 1 N N N -36.204 -30.485 -68.812 -3.825 0.243  -0.094 N1  WV9 1  
WV9 C4  C1  C 0 1 N N N -34.740 -28.656 -68.506 -5.037 2.369  -0.029 C4  WV9 2  
WV9 C5  C2  C 0 1 N N N -37.108 -29.929 -68.237 -2.704 0.957  -0.721 C5  WV9 3  
WV9 C6  C3  C 0 1 N N N -37.241 -30.129 -66.711 -1.382 0.365  -0.227 C6  WV9 4  
WV9 C7  C4  C 0 1 N N N -38.578 -29.613 -66.170 -0.215 1.109  -0.880 C7  WV9 5  
WV9 C8  C5  C 0 1 N N N -38.581 -29.336 -64.615 1.107  0.517  -0.386 C8  WV9 6  
WV9 C10 C6  C 0 1 Y N N -41.232 -29.013 -64.452 3.575  0.678  -0.552 C10 WV9 7  
WV9 C13 C7  C 0 1 Y N N -43.635 -27.855 -65.530 5.964  -0.391 0.341  C13 WV9 8  
WV9 C15 C8  C 0 1 N N N -45.821 -27.655 -67.111 8.432  -0.230 0.175  C15 WV9 9  
WV9 C17 C9  C 0 1 Y N N -42.577 -27.075 -65.070 5.380  0.662  1.022  C17 WV9 10 
WV9 C20 C10 C 0 1 N N S -35.445 -32.409 -70.064 -4.919 -1.913 0.294  C20 WV9 11 
WV9 C1  C11 C 0 1 N N R -34.103 -32.302 -69.549 -6.279 -1.275 -0.002 C1  WV9 12 
WV9 O1  O1  O 0 1 N N N -33.226 -32.909 -70.604 -7.291 -1.927 0.769  O1  WV9 13 
WV9 C2  C12 C 0 1 N N R -33.782 -30.905 -69.201 -6.229 0.209  0.371  C2  WV9 14 
WV9 O2  O2  O 0 1 N N N -32.529 -30.951 -68.525 -7.477 0.825  0.045  O2  WV9 15 
WV9 C3  C13 C 0 1 N N R -34.849 -30.186 -68.348 -5.104 0.889  -0.413 C3  WV9 16 
WV9 O3  O3  O 0 1 N N N -34.371 -28.277 -69.799 -4.859 2.487  1.384  O3  WV9 17 
WV9 O4  O4  O 0 1 N N N -46.394 -26.546 -67.834 9.667  -0.782 0.637  O4  WV9 18 
WV9 O5  O5  O 0 1 N N N -35.648 -33.813 -70.295 -4.940 -3.286 -0.103 O5  WV9 19 
WV9 C9  C14 C 0 1 N N N -39.928 -29.637 -63.844 2.273  1.261  -1.038 C9  WV9 20 
WV9 C11 C15 C 0 1 Y N N -42.322 -29.804 -64.872 4.162  -0.369 -1.236 C11 WV9 21 
WV9 C12 C16 C 0 1 Y N N -43.526 -29.249 -65.397 5.356  -0.904 -0.790 C12 WV9 22 
WV9 C14 C17 C 0 1 N N N -44.876 -27.089 -66.048 7.265  -0.973 0.828  C14 WV9 23 
WV9 C16 C18 C 0 1 N N N -47.754 -26.124 -67.767 10.826 -0.155 0.084  C16 WV9 24 
WV9 C18 C19 C 0 1 Y N N -41.401 -27.633 -64.536 4.186  1.196  0.576  C18 WV9 25 
WV9 C19 C20 C 0 1 N N N -36.447 -31.900 -69.038 -3.832 -1.172 -0.487 C19 WV9 26 
WV9 H2  H2  H 0 1 N N N -33.985 -28.281 -67.799 -4.199 2.840  -0.541 H2  WV9 27 
WV9 H3  H3  H 0 1 N N N -35.716 -28.207 -68.272 -5.965 2.862  -0.320 H3  WV9 28 
WV9 H4  H4  H 0 1 N N N -36.991 -28.850 -68.415 -2.767 0.852  -1.804 H4  WV9 29 
WV9 H5  H5  H 0 1 N N N -38.046 -30.277 -68.694 -2.752 2.013  -0.455 H5  WV9 30 
WV9 H6  H6  H 0 1 N N N -37.160 -31.203 -66.487 -1.320 0.470  0.856  H6  WV9 31 
WV9 H7  H7  H 0 1 N N N -36.425 -29.587 -66.211 -1.335 -0.691 -0.493 H7  WV9 32 
WV9 H8  H8  H 0 1 N N N -38.821 -28.674 -66.689 -0.278 1.004  -1.963 H8  WV9 33 
WV9 H9  H9  H 0 1 N N N -39.352 -30.364 -66.389 -0.263 2.165  -0.614 H9  WV9 34 
WV9 H10 H10 H 0 1 N N N -37.793 -29.957 -64.164 1.169  0.622  0.697  H10 WV9 35 
WV9 H11 H11 H 0 1 N N N -38.341 -28.273 -64.465 1.154  -0.538 -0.652 H11 WV9 36 
WV9 H12 H12 H 0 1 N N N -46.619 -28.238 -66.629 8.385  0.826  0.441  H12 WV9 37 
WV9 H13 H13 H 0 1 N N N -45.261 -28.302 -67.802 8.370  -0.335 -0.908 H13 WV9 38 
WV9 H14 H14 H 0 1 N N N -42.663 -26.000 -65.125 5.854  1.063  1.905  H14 WV9 39 
WV9 H15 H15 H 0 1 N N N -35.551 -31.839 -70.999 -4.710 -1.846 1.362  H15 WV9 40 
WV9 H16 H16 H 0 1 N N N -34.020 -32.916 -68.640 -6.506 -1.377 -1.063 H16 WV9 41 
WV9 H17 H17 H 0 1 N N N -32.319 -32.870 -70.324 -7.375 -2.873 0.588  H17 WV9 42 
WV9 H18 H18 H 0 1 N N N -33.665 -30.334 -70.134 -6.042 0.310  1.440  H18 WV9 43 
WV9 H19 H19 H 0 1 N N N -32.271 -30.071 -68.275 -8.237 0.442  0.505  H19 WV9 44 
WV9 H20 H20 H 0 1 N N N -34.727 -30.461 -67.290 -5.300 0.800  -1.481 H20 WV9 45 
WV9 H21 H21 H 0 1 N N N -34.317 -27.330 -69.849 -4.808 3.399  1.700  H21 WV9 46 
WV9 H22 H22 H 0 1 N N N -36.522 -33.955 -70.638 -4.109 -3.754 0.056  H22 WV9 47 
WV9 H23 H23 H 0 1 N N N -40.061 -30.729 -63.815 2.211  1.156  -2.122 H23 WV9 48 
WV9 H24 H24 H 0 1 N N N -39.820 -29.254 -62.819 2.226  2.317  -0.772 H24 WV9 49 
WV9 H25 H25 H 0 1 N N N -42.241 -30.878 -64.792 3.688  -0.771 -2.120 H25 WV9 50 
WV9 H26 H26 H 0 1 N N N -44.343 -29.892 -65.689 5.815  -1.723 -1.324 H26 WV9 51 
WV9 H27 H27 H 0 1 N N N -44.498 -26.139 -66.453 7.328  -0.868 1.911  H27 WV9 52 
WV9 H28 H28 H 0 1 N N N -45.499 -26.889 -65.164 7.313  -2.029 0.562  H28 WV9 53 
WV9 H29 H29 H 0 1 N N N -47.901 -25.254 -68.424 10.814 -0.259 -1.001 H29 WV9 54 
WV9 H30 H30 H 0 1 N N N -48.409 -26.945 -68.093 10.829 0.902  0.349  H30 WV9 55 
WV9 H31 H31 H 0 1 N N N -48.001 -25.847 -66.732 11.722 -0.632 0.484  H31 WV9 56 
WV9 H32 H32 H 0 1 N N N -40.616 -26.980 -64.185 3.730  2.018  1.107  H32 WV9 57 
WV9 H33 H33 H 0 1 N N N -37.470 -32.044 -69.416 -4.035 -1.252 -1.555 H33 WV9 58 
WV9 H34 H34 H 0 1 N N N -36.324 -32.452 -68.095 -2.861 -1.615 -0.267 H34 WV9 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WV9 O1  C1  SING N N 1  
WV9 O5  C20 SING N N 2  
WV9 C20 C1  SING N N 3  
WV9 C20 C19 SING N N 4  
WV9 O3  C4  SING N N 5  
WV9 C1  C2  SING N N 6  
WV9 C2  O2  SING N N 7  
WV9 C2  C3  SING N N 8  
WV9 C19 N1  SING N N 9  
WV9 N1  C3  SING N N 10 
WV9 N1  C5  SING N N 11 
WV9 C4  C3  SING N N 12 
WV9 C5  C6  SING N N 13 
WV9 O4  C16 SING N N 14 
WV9 O4  C15 SING N N 15 
WV9 C15 C14 SING N N 16 
WV9 C6  C7  SING N N 17 
WV9 C7  C8  SING N N 18 
WV9 C14 C13 SING N N 19 
WV9 C13 C12 DOUB Y N 20 
WV9 C13 C17 SING Y N 21 
WV9 C12 C11 SING Y N 22 
WV9 C17 C18 DOUB Y N 23 
WV9 C11 C10 DOUB Y N 24 
WV9 C8  C9  SING N N 25 
WV9 C18 C10 SING Y N 26 
WV9 C10 C9  SING N N 27 
WV9 C4  H2  SING N N 28 
WV9 C4  H3  SING N N 29 
WV9 C5  H4  SING N N 30 
WV9 C5  H5  SING N N 31 
WV9 C6  H6  SING N N 32 
WV9 C6  H7  SING N N 33 
WV9 C7  H8  SING N N 34 
WV9 C7  H9  SING N N 35 
WV9 C8  H10 SING N N 36 
WV9 C8  H11 SING N N 37 
WV9 C15 H12 SING N N 38 
WV9 C15 H13 SING N N 39 
WV9 C17 H14 SING N N 40 
WV9 C20 H15 SING N N 41 
WV9 C1  H16 SING N N 42 
WV9 O1  H17 SING N N 43 
WV9 C2  H18 SING N N 44 
WV9 O2  H19 SING N N 45 
WV9 C3  H20 SING N N 46 
WV9 O3  H21 SING N N 47 
WV9 O5  H22 SING N N 48 
WV9 C9  H23 SING N N 49 
WV9 C9  H24 SING N N 50 
WV9 C11 H25 SING N N 51 
WV9 C12 H26 SING N N 52 
WV9 C14 H27 SING N N 53 
WV9 C14 H28 SING N N 54 
WV9 C16 H29 SING N N 55 
WV9 C16 H30 SING N N 56 
WV9 C16 H31 SING N N 57 
WV9 C18 H32 SING N N 58 
WV9 C19 H33 SING N N 59 
WV9 C19 H34 SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WV9 SMILES           ACDLabs              12.01 "COCCc1ccc(cc1)CCCCCN1CC(O)C(O)C(O)C1CO"                                                                                                                  
WV9 InChI            InChI                1.06  "InChI=1S/C20H33NO5/c1-26-12-10-16-8-6-15(7-9-16)5-3-2-4-11-21-13-18(23)20(25)19(24)17(21)14-22/h6-9,17-20,22-25H,2-5,10-14H2,1H3/t17-,18+,19-,20-/m1/s1" 
WV9 InChIKey         InChI                1.06  GOQWFJVPBWGABY-IYWMVGAKSA-N                                                                                                                               
WV9 SMILES_CANONICAL CACTVS               3.385 "COCCc1ccc(CCCCCN2C[C@H](O)[C@@H](O)[C@H](O)[C@H]2CO)cc1"                                                                                                 
WV9 SMILES           CACTVS               3.385 "COCCc1ccc(CCCCCN2C[CH](O)[CH](O)[CH](O)[CH]2CO)cc1"                                                                                                      
WV9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COCCc1ccc(cc1)CCCCCN2C[C@@H]([C@H]([C@@H]([C@H]2CO)O)O)O"                                                                                                
WV9 SMILES           "OpenEye OEToolkits" 2.0.7 "COCCc1ccc(cc1)CCCCCN2CC(C(C(C2CO)O)O)O"                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
WV9 "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,3R,4R,5S)-2-(hydroxymethyl)-1-{5-[4-(2-methoxyethyl)phenyl]pentyl}piperidine-3,4,5-triol"             
WV9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{R},5~{S})-2-(hydroxymethyl)-1-[5-[4-(2-methoxyethyl)phenyl]pentyl]piperidine-3,4,5-triol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WV9 "Create component" 2022-10-20 RCSB 
WV9 "Initial release"  2023-02-22 RCSB 
# 
