data_WP9
# 
_chem_comp.id                                    WP9 
_chem_comp.name                                  "~{S}-[2-[3-[[(2~{R})-4-[[(2~{S})-2-azanyl-3-oxidanylidene-propoxy]-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] 2-azanylbenzenecarbothioate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H33 N4 O9 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-10 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        548.547 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WP9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8QRX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              N 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WP9 N    N1  N 0 1 N N N N N N 12.310 -8.080  -2.366 -8.941 -3.192 -1.366 N    WP9 1  
WP9 CA   C1  C 0 1 N N S N N N 11.143 -8.956  -2.398 -7.956 -3.882 -0.522 CA   WP9 2  
WP9 C    C2  C 0 1 N N N N N N 10.445 -9.095  -1.041 -8.611 -5.057 0.156  C    WP9 3  
WP9 O    O1  O 0 1 N N N N N N 9.213  -9.033  -0.966 -9.778 -5.296 -0.044 O    WP9 4  
WP9 CB   C3  C 0 1 N N N N N N 11.547 -10.335 -2.920 -7.425 -2.913 0.537  CB   WP9 5  
WP9 OG   O2  O 0 1 N N N N N N 11.849 -11.236 -1.851 -6.703 -1.858 -0.101 OG   WP9 6  
WP9 P24  P1  P 0 1 N N N N N N 11.820 -12.825 -2.111 -6.004 -0.657 0.712  P24  WP9 7  
WP9 C11  C4  C 0 1 N N N N N N 3.856  -11.421 -5.560 8.026  -0.678 -0.425 C11  WP9 8  
WP9 O11  O3  O 0 1 N N N N N N 3.471  -10.309 -5.913 7.704  -0.639 -1.597 O11  WP9 9  
WP9 C12  C5  C 0 1 Y N N N N N 4.194  -12.393 -6.495 9.362  -1.169 -0.043 C12  WP9 10 
WP9 C13  C6  C 0 1 Y N N N N N 3.240  -12.887 -7.383 10.217 -1.716 -1.012 C13  WP9 11 
WP9 N13  N2  N 0 1 N N N N N N 2.007  -12.401 -7.285 9.810  -1.795 -2.337 N13  WP9 12 
WP9 C14  C7  C 0 1 Y N N N N N 5.502  -12.873 -6.556 9.787  -1.090 1.286  C14  WP9 13 
WP9 C15  C8  C 0 1 Y N N N N N 3.575  -13.852 -8.324 11.474 -2.176 -0.639 C15  WP9 14 
WP9 C16  C9  C 0 1 Y N N N N N 5.844  -13.842 -7.500 11.036 -1.551 1.637  C16  WP9 15 
WP9 C17  C10 C 0 1 Y N N N N N 4.881  -14.331 -8.384 11.877 -2.096 0.679  C17  WP9 16 
WP9 O23  O4  O 0 1 N N N N N N 12.959 -13.141 -3.195 -7.009 0.006  1.572  O23  WP9 17 
WP9 O26  O5  O 0 1 N N N N N N 12.004 -13.620 -0.882 -4.819 -1.247 1.628  O26  WP9 18 
WP9 O27  O6  O 0 1 N N N N N N 10.401 -13.082 -2.832 -5.398 0.413  -0.327 O27  WP9 19 
WP9 C28  C11 C 0 1 N N N N N N 9.215  -13.188 -2.050 -4.804 1.646  0.083  C28  WP9 20 
WP9 C29  C12 C 0 1 N N N N N N 7.977  -12.840 -2.894 -4.333 2.421  -1.150 C29  WP9 21 
WP9 C30  C13 C 0 1 N N N N N N 6.751  -12.802 -1.991 -3.302 1.587  -1.912 C30  WP9 22 
WP9 C31  C14 C 0 1 N N N N N N 8.132  -11.439 -3.476 -5.530 2.708  -2.059 C31  WP9 23 
WP9 C32  C15 C 0 1 N N R N N N 7.770  -13.880 -4.024 -3.698 3.741  -0.711 C32  WP9 24 
WP9 O33  O7  O 0 1 N N N N N N 8.941  -13.968 -4.844 -4.646 4.497  0.046  O33  WP9 25 
WP9 C34  C16 C 0 1 N N N N N N 7.470  -15.257 -3.424 -2.487 3.458  0.141  C34  WP9 26 
WP9 O35  O8  O 0 1 N N N N N N 8.378  -16.043 -3.148 -2.525 3.661  1.336  O35  WP9 27 
WP9 N36  N3  N 0 1 N N N N N N 6.167  -15.517 -3.248 -1.363 2.978  -0.426 N36  WP9 28 
WP9 C37  C17 C 0 1 N N N N N N 5.684  -16.776 -2.682 -0.224 2.597  0.414  C37  WP9 29 
WP9 C38  C18 C 0 1 N N N N N N 4.884  -16.471 -1.424 0.915  2.088  -0.472 C38  WP9 30 
WP9 C39  C19 C 0 1 N N N N N N 3.562  -15.799 -1.792 2.086  1.696  0.392  C39  WP9 31 
WP9 O40  O9  O 0 1 N N N N N N 2.519  -16.448 -1.852 2.016  1.812  1.597  O40  WP9 32 
WP9 N41  N4  N 0 1 N N N N N N 3.634  -14.477 -2.011 3.211  1.216  -0.175 N41  WP9 33 
WP9 C42  C20 C 0 1 N N N N N N 2.461  -13.678 -2.375 4.349  0.835  0.665  C42  WP9 34 
WP9 C43  C21 C 0 1 N N N N N N 2.635  -13.092 -3.763 5.488  0.326  -0.221 C43  WP9 35 
WP9 S44  S1  S 0 1 N N N N N N 4.018  -11.912 -3.890 6.894  -0.145 0.817  S44  WP9 36 
WP9 HN   H1  H 0 1 N N N N N N 12.042 -7.179  -2.024 -9.259 -3.791 -2.114 HN   WP9 37 
WP9 H1   H2  H 0 1 N N N N N N 13.005 -8.472  -1.763 -9.717 -2.857 -0.816 H1   WP9 38 
WP9 HA   H4  H 0 1 N N N N N N 10.412 -8.535  -3.104 -7.129 -4.232 -1.140 HA   WP9 39 
WP9 H3   H5  H 0 1 N N N N N N 11.032 -9.248  -0.147 -8.037 -5.687 0.820  H3   WP9 40 
WP9 HB1  H6  H 0 1 N N N N N N 10.718 -10.749 -3.512 -8.260 -2.494 1.098  HB1  WP9 41 
WP9 HB2  H7  H 0 1 N N N N N N 12.436 -10.228 -3.559 -6.762 -3.447 1.218  HB2  WP9 42 
WP9 H131 H8  H 0 0 N N N N N N 1.973  -11.722 -6.552 8.972  -1.392 -2.612 H131 WP9 43 
WP9 H132 H9  H 0 0 N N N N N N 1.749  -11.970 -8.150 10.363 -2.255 -2.988 H132 WP9 44 
WP9 H14  H10 H 0 1 N N N N N N 6.249  -12.495 -5.874 9.136  -0.666 2.037  H14  WP9 45 
WP9 H15  H11 H 0 1 N N N N N N 2.827  -14.229 -9.005 12.137 -2.597 -1.380 H15  WP9 46 
WP9 H16  H12 H 0 1 N N N N N N 6.857  -14.215 -7.547 11.363 -1.488 2.664  H16  WP9 47 
WP9 H17  H13 H 0 1 N N N N N N 5.149  -15.080 -9.114 12.854 -2.455 0.964  H17  WP9 48 
WP9 H4   H14 H 0 1 N N N N N N 12.772 -14.172 -0.973 -4.123 -1.697 1.129  H4   WP9 49 
WP9 H281 H15 H 0 0 N N N N N N 9.280  -12.493 -1.199 -5.539 2.240  0.626  H281 WP9 50 
WP9 H282 H16 H 0 0 N N N N N N 9.120  -14.218 -1.676 -3.952 1.442  0.731  H282 WP9 51 
WP9 H302 H17 H 0 0 N N N N N N 6.906  -12.062 -1.192 -3.786 0.706  -2.334 H302 WP9 52 
WP9 H303 H18 H 0 0 N N N N N N 5.868  -12.522 -2.584 -2.874 2.186  -2.717 H303 WP9 53 
WP9 H301 H19 H 0 0 N N N N N N 6.593  -13.795 -1.545 -2.510 1.276  -1.230 H301 WP9 54 
WP9 H312 H20 H 0 0 N N N N N N 8.278  -10.716 -2.660 -6.303 3.224  -1.490 H312 WP9 55 
WP9 H313 H21 H 0 0 N N N N N N 9.004  -11.415 -4.147 -5.211 3.336  -2.891 H313 WP9 56 
WP9 H311 H22 H 0 0 N N N N N N 7.227  -11.175 -4.042 -5.927 1.769  -2.444 H311 WP9 57 
WP9 H32  H23 H 0 1 N N N N N N 6.908  -13.566 -4.632 -3.399 4.311  -1.590 H32  WP9 58 
WP9 H33  H24 H 0 1 N N N N N N 9.387  -14.789 -4.672 -4.957 4.051  0.845  H33  WP9 59 
WP9 H36  H25 H 0 1 N N N N N N 5.499  -14.823 -3.514 -1.307 2.885  -1.390 H36  WP9 60 
WP9 H371 H26 H 0 0 N N N N N N 5.042  -17.288 -3.414 0.116  3.464  0.980  H371 WP9 61 
WP9 H372 H27 H 0 0 N N N N N N 6.539  -17.420 -2.430 -0.529 1.809  1.103  H372 WP9 62 
WP9 H381 H28 H 0 0 N N N N N N 4.678  -17.409 -0.887 0.575  1.221  -1.038 H381 WP9 63 
WP9 H382 H29 H 0 0 N N N N N N 5.466  -15.798 -0.777 1.219  2.876  -1.161 H382 WP9 64 
WP9 H41  H30 H 0 1 N N N N N N 4.520  -14.021 -1.923 3.266  1.123  -1.139 H41  WP9 65 
WP9 H422 H31 H 0 0 N N N N N N 2.339  -12.861 -1.649 4.689  1.702  1.231  H422 WP9 66 
WP9 H421 H32 H 0 0 N N N N N N 1.567  -14.318 -2.361 4.044  0.047  1.354  H421 WP9 67 
WP9 H431 H33 H 0 0 N N N N N N 1.707  -12.570 -4.039 5.148  -0.541 -0.787 H431 WP9 68 
WP9 H432 H34 H 0 0 N N N N N N 2.816  -13.917 -4.468 5.792  1.113  -0.910 H432 WP9 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WP9 C17 C15  DOUB Y N 1  
WP9 C17 C16  SING Y N 2  
WP9 C15 C13  SING Y N 3  
WP9 C16 C14  DOUB Y N 4  
WP9 C13 N13  SING N N 5  
WP9 C13 C12  DOUB Y N 6  
WP9 C14 C12  SING Y N 7  
WP9 C12 C11  SING N N 8  
WP9 O11 C11  DOUB N N 9  
WP9 C11 S44  SING N N 10 
WP9 O33 C32  SING N N 11 
WP9 C32 C34  SING N N 12 
WP9 C32 C29  SING N N 13 
WP9 S44 C43  SING N N 14 
WP9 C43 C42  SING N N 15 
WP9 C31 C29  SING N N 16 
WP9 C34 N36  SING N N 17 
WP9 C34 O35  DOUB N N 18 
WP9 N36 C37  SING N N 19 
WP9 O23 P24  DOUB N N 20 
WP9 CB  CA   SING N N 21 
WP9 CB  OG   SING N N 22 
WP9 C29 C28  SING N N 23 
WP9 C29 C30  SING N N 24 
WP9 O27 P24  SING N N 25 
WP9 O27 C28  SING N N 26 
WP9 C37 C38  SING N N 27 
WP9 CA  N    SING N N 28 
WP9 CA  C    SING N N 29 
WP9 C42 N41  SING N N 30 
WP9 P24 OG   SING N N 31 
WP9 P24 O26  SING N N 32 
WP9 N41 C39  SING N N 33 
WP9 O40 C39  DOUB N N 34 
WP9 C39 C38  SING N N 35 
WP9 C   O    DOUB N N 36 
WP9 N   HN   SING N N 37 
WP9 N   H1   SING N N 38 
WP9 CA  HA   SING N N 39 
WP9 C   H3   SING N N 40 
WP9 CB  HB1  SING N N 41 
WP9 CB  HB2  SING N N 42 
WP9 N13 H131 SING N N 43 
WP9 N13 H132 SING N N 44 
WP9 C14 H14  SING N N 45 
WP9 C15 H15  SING N N 46 
WP9 C16 H16  SING N N 47 
WP9 C17 H17  SING N N 48 
WP9 O26 H4   SING N N 49 
WP9 C28 H281 SING N N 50 
WP9 C28 H282 SING N N 51 
WP9 C30 H302 SING N N 52 
WP9 C30 H303 SING N N 53 
WP9 C30 H301 SING N N 54 
WP9 C31 H312 SING N N 55 
WP9 C31 H313 SING N N 56 
WP9 C31 H311 SING N N 57 
WP9 C32 H32  SING N N 58 
WP9 O33 H33  SING N N 59 
WP9 N36 H36  SING N N 60 
WP9 C37 H371 SING N N 61 
WP9 C37 H372 SING N N 62 
WP9 C38 H381 SING N N 63 
WP9 C38 H382 SING N N 64 
WP9 N41 H41  SING N N 65 
WP9 C42 H422 SING N N 66 
WP9 C42 H421 SING N N 67 
WP9 C43 H431 SING N N 68 
WP9 C43 H432 SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WP9 InChI            InChI                1.06  "InChI=1S/C21H33N4O9PS/c1-21(2,13-34-35(31,32)33-12-14(22)11-26)18(28)19(29)25-8-7-17(27)24-9-10-36-20(30)15-5-3-4-6-16(15)23/h3-6,11,14,18,28H,7-10,12-13,22-23H2,1-2H3,(H,24,27)(H,25,29)(H,31,32)/t14-,18+/m1/s1" 
WP9 InChIKey         InChI                1.06  CMCFYAYZTKTCDB-KDOFPFPSSA-N                                                                                                                                                                                          
WP9 SMILES_CANONICAL CACTVS               3.385 "CC(C)(CO[P](O)(=O)OC[C@H](N)C=O)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)c1ccccc1N"                                                                                                                                           
WP9 SMILES           CACTVS               3.385 "CC(C)(CO[P](O)(=O)OC[CH](N)C=O)[CH](O)C(=O)NCCC(=O)NCCSC(=O)c1ccccc1N"                                                                                                                                              
WP9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(COP(=O)(O)OC[C@@H](C=O)N)[C@H](C(=O)NCCC(=O)NCCSC(=O)c1ccccc1N)O"                                                                                                                                             
WP9 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)(COP(=O)(O)OCC(C=O)N)C(C(=O)NCCC(=O)NCCSC(=O)c1ccccc1N)O"                                                                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           WP9 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{S}-[2-[3-[[(2~{R})-4-[[(2~{S})-2-azanyl-3-oxidanylidene-propoxy]-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] 2-azanylbenzenecarbothioate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WP9 "Create component" 2023-10-10 PDBE 
WP9 "Initial release"  2024-06-26 RCSB 
WP9 "Modify PCM"       2024-09-27 PDBE 
# 
