data_WK9
# 
_chem_comp.id                                    WK9 
_chem_comp.name                                  
;(1R,2S)-2-{[(2M)-4'-(methoxycarbonyl)-4,5-dihydro-2'H,3H-[2,3'-bi-1lambda~4~-thiophen]-5'-yl]carbamoyl}cyclohexane-1-carboxylic acid
;
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H25 N O5 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-05-15 
_chem_comp.pdbx_modified_date                    2023-06-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        399.525 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WK9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G0F 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WK9 C1  C1  C 0 1 N N N 4.179 7.510  20.953 1.402  -0.029 -0.051 C1  WK9 1  
WK9 C2  C2  C 0 1 N N N 4.152 7.579  19.520 0.108  0.295  0.093  C2  WK9 2  
WK9 C3  C3  C 0 1 N N N 2.917 7.079  21.469 2.400  0.973  0.329  C3  WK9 3  
WK9 N4  N1  N 0 1 N N N 5.224 7.994  18.768 -0.912 -0.530 -0.217 N4  WK9 4  
WK9 C5  C4  C 0 1 N N N 5.171 8.011  17.366 -2.182 -0.086 -0.145 C5  WK9 5  
WK9 S6  S1  S 0 1 N N N 2.663 7.155  18.857 -0.079 1.732  0.659  S6  WK9 6  
WK9 C7  C5  C 0 1 N N N 2.021 6.928  20.400 1.675  2.211  0.824  C7  WK9 7  
WK9 C8  C6  C 0 1 N N N 2.493 6.922  22.869 3.717  0.824  0.253  C8  WK9 8  
WK9 C9  C7  C 0 1 N N N 5.351 7.911  21.677 1.803  -1.343 -0.566 C9  WK9 9  
WK9 C10 C8  C 0 1 N N S 6.407 8.444  16.645 -3.323 -1.009 -0.491 C10 WK9 10 
WK9 C11 C9  C 0 1 N N R 7.298 7.194  16.400 -4.649 -0.263 -0.327 C11 WK9 11 
WK9 C12 C10 C 0 1 N N N 6.560 6.135  15.624 -4.672 0.930  -1.246 C12 WK9 12 
WK9 S13 S2  S 0 1 N N N 0.989 7.543  23.358 4.444  -0.410 -0.372 S13 WK9 13 
WK9 O14 O1  O 0 1 N N N 4.180 7.666  16.731 -2.408 1.054  0.199  O14 WK9 14 
WK9 C15 C11 C 0 1 N N N 3.193 6.283  23.925 4.727  1.820  0.750  C15 WK9 15 
WK9 C16 C12 C 0 1 N N N 1.191 6.984  24.920 6.092  0.349  -0.636 C16 WK9 16 
WK9 O17 O2  O 0 1 N N N 6.389 8.282  21.140 1.709  -1.585 -1.754 O17 WK9 17 
WK9 O18 O3  O 0 1 N N N 6.054 5.116  16.029 -3.724 1.161  -1.959 O18 WK9 18 
WK9 C19 C13 C 0 1 N N N 2.405 6.312  25.126 6.166  1.310  0.581  C19 WK9 19 
WK9 C20 C14 C 0 1 N N N 8.455 7.748  18.531 -4.772 -1.006 2.056  C20 WK9 20 
WK9 C21 C15 C 0 1 N N N 8.108 9.035  18.375 -3.446 -1.751 1.892  C21 WK9 21 
WK9 O22 O4  O 0 1 N N N 6.514 6.429  14.383 -5.744 1.737  -1.273 O22 WK9 22 
WK9 O23 O5  O 0 1 N N N 5.294 7.813  23.012 2.275  -2.282 0.279  O23 WK9 23 
WK9 C24 C16 C 0 1 N N N 7.140 9.551  17.386 -3.300 -2.221 0.443  C24 WK9 24 
WK9 C25 C17 C 0 1 N N N 7.868 6.642  17.690 -4.795 0.206  1.122  C25 WK9 25 
WK9 C26 C18 C 0 1 N N N 6.485 8.169  23.677 2.652  -3.559 -0.300 C26 WK9 26 
WK9 H27 H1  H 0 1 N N N 6.060 8.290  19.230 -0.731 -1.442 -0.492 H27 WK9 27 
WK9 H1  H2  H 0 1 N N N 1.611 5.908  20.447 1.925  2.415  1.865  H1  WK9 28 
WK9 H28 H3  H 0 1 N N N 1.209 7.657  20.537 1.903  3.071  0.194  H28 WK9 29 
WK9 H29 H4  H 0 1 N N N 6.111 8.836  15.661 -3.219 -1.343 -1.523 H29 WK9 30 
WK9 H30 H5  H 0 1 N N N 8.146 7.523  15.782 -5.474 -0.930 -0.577 H30 WK9 31 
WK9 H2  H6  H 0 1 N N N 3.396 5.238  23.648 4.612  2.750  0.193  H2  WK9 32 
WK9 H31 H7  H 0 1 N N N 4.144 6.807  24.101 4.542  2.016  1.806  H31 WK9 33 
WK9 H32 H8  H 0 1 N N N 1.150 7.844  25.605 6.882  -0.401 -0.596 H32 WK9 34 
WK9 H3  H9  H 0 1 N N N 0.368 6.292  25.150 6.125  0.902  -1.575 H3  WK9 35 
WK9 H4  H10 H 0 1 N N N 2.195 5.280  25.442 6.841  2.139  0.369  H4  WK9 36 
WK9 H33 H11 H 0 1 N N N 2.972 6.829  25.915 6.487  0.773  1.474  H33 WK9 37 
WK9 H5  H12 H 0 1 N N N 9.543 7.704  18.377 -5.597 -1.673 1.805  H5  WK9 38 
WK9 H34 H13 H 0 1 N N N 8.222 7.494  19.576 -4.876 -0.672 3.088  H34 WK9 39 
WK9 H35 H14 H 0 1 N N N 7.719 9.351  19.354 -2.621 -1.084 2.142  H35 WK9 40 
WK9 H6  H15 H 0 1 N N N 9.048 9.566  18.165 -3.430 -2.615 2.557  H6  WK9 41 
WK9 H36 H16 H 0 1 N N N 6.049 5.747  13.913 -5.712 2.490  -1.879 H36 WK9 42 
WK9 H38 H17 H 0 1 N N N 7.682 10.166 16.652 -4.125 -2.888 0.192  H38 WK9 43 
WK9 H37 H18 H 0 1 N N N 6.400 10.173 17.910 -2.356 -2.751 0.326  H37 WK9 44 
WK9 H39 H19 H 0 1 N N N 7.066 6.145  18.256 -3.970 0.873  1.372  H39 WK9 45 
WK9 H40 H20 H 0 1 N N N 8.656 5.912  17.453 -5.740 0.737  1.239  H40 WK9 46 
WK9 H43 H21 H 0 1 N N N 6.346 8.059  24.763 1.785  -4.009 -0.784 H43 WK9 47 
WK9 H42 H22 H 0 1 N N N 7.302 7.512  23.343 3.440  -3.405 -1.037 H42 WK9 48 
WK9 H41 H23 H 0 1 N N N 6.737 9.214  23.444 3.014  -4.222 0.486  H41 WK9 49 
WK9 H7  H24 H 0 1 N N N 2.094 8.110  18.184 -0.484 2.431  -0.417 H7  WK9 50 
WK9 H8  H25 H 0 1 N N N 0.909 8.838  23.275 4.647  -1.212 0.689  H8  WK9 51 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WK9 C1  C2  SING N N 1  
WK9 C1  C3  DOUB N N 2  
WK9 C2  N4  SING N N 3  
WK9 N4  C5  SING N N 4  
WK9 C2  S6  DOUB N N 5  
WK9 C3  C7  SING N N 6  
WK9 S6  C7  SING N N 7  
WK9 C3  C8  SING N N 8  
WK9 C1  C9  SING N N 9  
WK9 C5  C10 SING N N 10 
WK9 C10 C11 SING N N 11 
WK9 C11 C12 SING N N 12 
WK9 C8  S13 DOUB N N 13 
WK9 C5  O14 DOUB N N 14 
WK9 C8  C15 SING N N 15 
WK9 S13 C16 SING N N 16 
WK9 C9  O17 DOUB N N 17 
WK9 C12 O18 DOUB N N 18 
WK9 C15 C19 SING N N 19 
WK9 C16 C19 SING N N 20 
WK9 C20 C21 SING N N 21 
WK9 C12 O22 SING N N 22 
WK9 C9  O23 SING N N 23 
WK9 C10 C24 SING N N 24 
WK9 C21 C24 SING N N 25 
WK9 C11 C25 SING N N 26 
WK9 C20 C25 SING N N 27 
WK9 O23 C26 SING N N 28 
WK9 N4  H27 SING N N 29 
WK9 C7  H1  SING N N 30 
WK9 C7  H28 SING N N 31 
WK9 C10 H29 SING N N 32 
WK9 C11 H30 SING N N 33 
WK9 C15 H2  SING N N 34 
WK9 C15 H31 SING N N 35 
WK9 C16 H32 SING N N 36 
WK9 C16 H3  SING N N 37 
WK9 C19 H4  SING N N 38 
WK9 C19 H33 SING N N 39 
WK9 C20 H5  SING N N 40 
WK9 C20 H34 SING N N 41 
WK9 C21 H35 SING N N 42 
WK9 C21 H6  SING N N 43 
WK9 O22 H36 SING N N 44 
WK9 C24 H38 SING N N 45 
WK9 C24 H37 SING N N 46 
WK9 C25 H39 SING N N 47 
WK9 C25 H40 SING N N 48 
WK9 C26 H43 SING N N 49 
WK9 C26 H42 SING N N 50 
WK9 C26 H41 SING N N 51 
WK9 S6  H7  SING N N 52 
WK9 S13 H8  SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WK9 SMILES           ACDLabs              12.01 "O=C(O)C1CCCCC1C(=O)NC1=SCC(C2=SCCC2)=C1C(=O)OC"                                                                                                                
WK9 InChI            InChI                1.06  "InChI=1S/C18H25NO5S2/c1-24-18(23)14-12(13-7-4-8-25-13)9-26-16(14)19-15(20)10-5-2-3-6-11(10)17(21)22/h10-11,25-26H,2-9H2,1H3,(H,19,20)(H,21,22)/t10-,11+/m0/s1" 
WK9 InChIKey         InChI                1.06  HVVXCXSHYYKYKR-WDEREUQCSA-N                                                                                                                                     
WK9 SMILES_CANONICAL CACTVS               3.385 "COC(=O)C1=C(C[SH]=C1NC(=O)[C@H]2CCCC[C@H]2C(O)=O)C3=[SH]CCC3"                                                                                                  
WK9 SMILES           CACTVS               3.385 "COC(=O)C1=C(C[SH]=C1NC(=O)[CH]2CCCC[CH]2C(O)=O)C3=[SH]CCC3"                                                                                                    
WK9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COC(=O)C1=C(CS=C1NC(=O)[C@H]2CCCC[C@H]2C(=O)O)C3=SCCC3"                                                                                                        
WK9 SMILES           "OpenEye OEToolkits" 2.0.7 "COC(=O)C1=C(CS=C1NC(=O)C2CCCCC2C(=O)O)C3=SCCC3"                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
WK9 "SYSTEMATIC NAME" ACDLabs              12.01 
;(1R,2S)-2-{[(2M)-4'-(methoxycarbonyl)-4,5-dihydro-2'H,3H-[2,3'-bi-1lambda~4~-thiophen]-5'-yl]carbamoyl}cyclohexane-1-carboxylic acid
;
WK9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S})-2-[[3-(3,4-dihydro-2~{H}-thiophen-5-yl)-4-methoxycarbonyl-2~{H}-thiophen-5-yl]carbamoyl]cyclohexane-1-carboxylic acid"  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WK9 "Create component" 2023-05-15 RCSB 
WK9 "Initial release"  2023-06-14 RCSB 
# 
