data_VX9
# 
_chem_comp.id                                    VX9 
_chem_comp.name                                  "4-[[(2~{S},4~{a}~{R},6~{S},8~{a}~{S})-6-[(4~{S},5~{R})-4-[(2~{S})-butan-2-yl]-5,9-dimethyl-decyl]-4~{a}-methyl-2,3,4,5,6,7,8,8~{a}-octahydro-1~{H}-naphthalen-2-yl]oxy]-4-oxidanylidene-butanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C31 H56 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-09-02 
_chem_comp.pdbx_modified_date                    2024-04-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        492.774 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VX9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8INZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VX9 CAA C1  C 0 1 N N N N N N 177.915 159.242 160.154 -5.569 -5.459 -1.401 CAA VX9 1  
VX9 CAB C2  C 0 1 N N N N N N 178.550 159.064 161.560 -5.896 -5.270 0.082  CAB VX9 2  
VX9 CAC C3  C 0 1 N N N N N N 178.109 157.706 162.237 -5.382 -6.473 0.876  CAC VX9 3  
VX9 CAD C4  C 0 1 N N N N N N 178.147 160.272 162.473 -5.222 -3.995 0.594  CAD VX9 4  
VX9 CAE C5  C 0 1 N N N N N N 176.615 160.193 162.870 -5.826 -2.780 -0.112 CAE VX9 5  
VX9 CAF C6  C 0 1 N N N N N N 176.453 160.139 164.437 -5.152 -1.505 0.400  CAF VX9 6  
VX9 CAG C7  C 0 1 N N R N N N 175.359 161.101 164.949 -5.756 -0.290 -0.307 CAG VX9 7  
VX9 CAH C8  C 0 1 N N N N N N 174.355 160.261 165.686 -7.229 -0.153 0.083  CAH VX9 8  
VX9 CAI C9  C 0 1 N N S N N N 176.008 162.123 165.928 -4.999 0.972  0.112  CAI VX9 9  
VX9 CAJ C10 C 0 1 N N N N N N 177.557 162.553 165.634 -3.542 0.867  -0.343 CAJ VX9 10 
VX9 CAK C11 C 0 1 N N N N N N 177.706 164.070 166.270 -2.752 2.061  0.196  CAK VX9 11 
VX9 CAL C12 C 0 1 N N N N N N 176.585 164.159 167.032 -1.324 2.017  -0.352 CAL VX9 12 
VX9 CAM C13 C 0 1 N N S N N N 175.326 163.292 166.275 -5.648 2.196  -0.537 CAM VX9 13 
VX9 CAN C14 C 0 1 N N N N N N 175.339 163.925 164.812 -6.052 1.857  -1.974 CAN VX9 14 
VX9 CAO C15 C 0 1 N N N N N N 173.892 163.875 166.011 -6.891 2.597  0.261  CAO VX9 15 
VX9 CAP C16 C 0 1 N N N N N N 173.625 165.273 166.630 -6.469 3.092  1.646  CAP VX9 16 
VX9 CAQ C17 C 0 1 N N N N N N 174.679 165.767 167.906 0.729  3.408  -0.654 CAQ VX9 17 
VX9 CAR C18 C 0 1 N N S N N N 176.211 165.610 167.573 -0.534 3.211  0.186  CAR VX9 18 
VX9 CAS C19 C 0 1 N N N N N N 176.890 166.803 166.803 -0.142 2.949  1.642  CAS VX9 19 
VX9 CAT C20 C 0 1 N N N N N N 176.410 168.177 167.324 0.723  1.689  1.718  CAT VX9 20 
VX9 CAU C21 C 0 1 N N S N N N 175.585 168.140 168.665 1.986  1.886  0.878  CAU VX9 21 
VX9 CAV C22 C 0 1 N N N N N N 175.204 169.532 169.311 2.851  0.626  0.954  CAV VX9 22 
VX9 CAW C23 C 0 1 N N R N N N 174.405 167.115 168.693 1.594  2.148  -0.578 CAW VX9 23 
VX9 CAX C24 C 0 1 N N N N N N 173.588 167.850 167.540 0.804  0.954  -1.117 CAX VX9 24 
VX9 CAY C25 C 0 1 N N N N N N 173.021 167.463 169.360 2.858  2.345  -1.418 CAY VX9 25 
VX9 CAZ C26 C 0 1 N N N N N N 173.078 168.637 170.410 3.722  1.085  -1.342 CAZ VX9 26 
VX9 CBA C27 C 0 1 N N S N N N 174.473 169.264 170.680 4.114  0.823  0.113  CBA VX9 27 
VX9 CBC C28 C 0 1 N N N N N N 175.160 170.419 172.566 6.262  -0.208 0.072  CBC VX9 28 
VX9 CBE C29 C 0 1 N N N N N N 174.600 170.868 173.936 7.178  -1.404 0.137  CBE VX9 29 
VX9 CBF C30 C 0 1 N N N N N N 174.992 172.304 174.301 8.628  -0.944 -0.018 CBF VX9 30 
VX9 CBG C31 C 0 1 N N N N N N 176.510 172.517 174.278 9.544  -2.139 0.047  CBG VX9 31 
VX9 OBB O1  O 0 1 N N N N N N 174.321 170.435 171.410 4.935  -0.373 0.186  OBB VX9 32 
VX9 OBD O2  O 0 1 N N N N N N 176.297 170.033 172.459 6.723  0.898  -0.083 OBD VX9 33 
VX9 OBH O3  O 0 1 N N N N N N 177.054 173.244 173.413 9.083  -3.245 0.202  OBH VX9 34 
VX9 OBI O4  O 0 1 N N N N N N 177.268 171.959 175.109 10.871 -1.975 -0.067 OBI VX9 35 
VX9 H1  H1  H 0 1 N N N N N N 178.247 160.197 159.719 -4.490 -5.543 -1.527 H1  VX9 36 
VX9 H2  H2  H 0 1 N N N N N N 178.230 158.414 159.502 -6.049 -6.367 -1.765 H2  VX9 37 
VX9 H3  H3  H 0 1 N N N N N N 176.819 159.242 160.244 -5.936 -4.602 -1.966 H3  VX9 38 
VX9 H4  H4  H 0 1 N N N N N N 179.645 159.058 161.453 -6.976 -5.186 0.208  H4  VX9 39 
VX9 H5  H5  H 0 1 N N N N N N 178.579 157.620 163.228 -4.302 -6.557 0.749  H5  VX9 40 
VX9 H6  H6  H 0 1 N N N N N N 177.015 157.690 162.348 -5.615 -6.338 1.932  H6  VX9 41 
VX9 H7  H7  H 0 1 N N N N N N 178.426 156.862 161.606 -5.862 -7.381 0.511  H7  VX9 42 
VX9 H8  H8  H 0 1 N N N N N N 178.758 160.252 163.388 -5.381 -3.907 1.669  H8  VX9 43 
VX9 H9  H9  H 0 1 N N N N N N 178.331 161.211 161.930 -4.153 -4.041 0.387  H9  VX9 44 
VX9 H10 H10 H 0 1 N N N N N N 176.094 161.081 162.483 -5.668 -2.868 -1.187 H10 VX9 45 
VX9 H11 H11 H 0 1 N N N N N N 176.173 159.287 162.429 -6.895 -2.734 0.094  H11 VX9 46 
VX9 H12 H12 H 0 1 N N N N N N 176.186 159.113 164.729 -5.311 -1.417 1.474  H12 VX9 47 
VX9 H13 H13 H 0 1 N N N N N N 177.411 160.415 164.901 -4.083 -1.551 0.193  H13 VX9 48 
VX9 H14 H14 H 0 1 N N N N N N 174.888 161.629 164.106 -5.677 -0.420 -1.386 H14 VX9 49 
VX9 H15 H15 H 0 1 N N N N N N 173.551 160.904 166.072 -7.696 0.621  -0.525 H15 VX9 50 
VX9 H16 H16 H 0 1 N N N N N N 173.929 159.513 165.001 -7.739 -1.102 -0.083 H16 VX9 51 
VX9 H17 H17 H 0 1 N N N N N N 174.850 159.750 166.525 -7.303 0.118  1.136  H17 VX9 52 
VX9 H18 H18 H 0 1 N N N N N N 176.090 161.556 166.867 -5.034 1.074  1.196  H18 VX9 53 
VX9 H19 H19 H 0 1 N N N N N N 178.252 161.857 166.127 -3.108 -0.058 0.038  H19 VX9 54 
VX9 H20 H20 H 0 1 N N N N N N 177.756 162.566 164.552 -3.500 0.865  -1.432 H20 VX9 55 
VX9 H21 H21 H 0 1 N N N N N N 178.615 164.161 166.882 -3.233 2.987  -0.119 H21 VX9 56 
VX9 H22 H22 H 0 1 N N N N N N 177.717 164.837 165.481 -2.724 2.017  1.284  H22 VX9 57 
VX9 H23 H23 H 0 1 N N N N N N 175.740 163.799 166.427 -0.842 1.091  -0.038 H23 VX9 58 
VX9 H24 H24 H 0 1 N N N N N N 176.719 163.501 167.903 -1.351 2.060  -1.441 H24 VX9 59 
VX9 H25 H25 H 0 1 N N N N N N 175.884 163.932 166.975 -4.938 3.023  -0.545 H25 VX9 60 
VX9 H26 H26 H 0 1 N N N N N N 174.832 164.901 164.830 -6.830 1.094  -1.962 H26 VX9 61 
VX9 H27 H27 H 0 1 N N N N N N 176.379 164.058 164.479 -6.430 2.753  -2.466 H27 VX9 62 
VX9 H28 H28 H 0 1 N N N N N N 174.815 163.253 164.117 -5.184 1.483  -2.516 H28 VX9 63 
VX9 H29 H29 H 0 1 N N N N N N 173.750 163.952 164.923 -7.418 3.393  -0.265 H29 VX9 64 
VX9 H30 H30 H 0 1 N N N N N N 173.156 163.172 166.428 -7.548 1.734  0.368  H30 VX9 65 
VX9 H31 H31 H 0 1 N N N N N N 172.600 165.591 166.390 -5.870 2.326  2.139  H31 VX9 66 
VX9 H32 H32 H 0 1 N N N N N N 173.746 165.220 167.722 -5.880 4.003  1.542  H32 VX9 67 
VX9 H33 H33 H 0 1 N N N N N N 174.340 165.999 166.217 -7.357 3.299  2.243  H33 VX9 68 
VX9 H34 H34 H 0 1 N N N N N N 174.106 165.775 166.967 0.450  3.595  -1.691 H34 VX9 69 
VX9 H35 H35 H 0 1 N N N N N N 174.356 164.917 168.525 1.292  4.259  -0.271 H35 VX9 70 
VX9 H36 H36 H 0 1 N N N N N N 176.690 165.640 168.563 -1.150 4.109  0.132  H36 VX9 71 
VX9 H37 H37 H 0 1 N N N N N N 177.980 166.735 166.933 0.421  3.800  2.026  H37 VX9 72 
VX9 H38 H38 H 0 1 N N N N N N 176.643 166.722 165.734 -1.042 2.809  2.241  H38 VX9 73 
VX9 H39 H39 H 0 1 N N N N N N 177.297 168.806 167.488 1.002  1.502  2.755  H39 VX9 74 
VX9 H40 H40 H 0 1 N N N N N N 175.776 168.632 166.548 0.160  0.838  1.334  H40 VX9 75 
VX9 H41 H41 H 0 1 N N N N N N 176.301 167.719 169.386 2.549  2.737  1.261  H41 VX9 76 
VX9 H42 H42 H 0 1 N N N N N N 176.116 170.122 169.486 3.130  0.439  1.991  H42 VX9 77 
VX9 H43 H43 H 0 1 N N N N N N 174.535 170.084 168.635 2.288  -0.225 0.570  H43 VX9 78 
VX9 H44 H44 H 0 1 N N N N N N 173.284 168.849 167.885 0.009  1.310  -1.771 H44 VX9 79 
VX9 H45 H45 H 0 1 N N N N N N 174.222 167.948 166.647 1.472  0.300  -1.678 H45 VX9 80 
VX9 H46 H46 H 0 1 N N N N N N 172.693 167.260 167.292 0.369  0.401  -0.284 H46 VX9 81 
VX9 H47 H47 H 0 1 N N N N N N 172.318 167.748 168.564 2.578  2.532  -2.455 H47 VX9 82 
VX9 H48 H48 H 0 1 N N N N N N 172.650 166.562 169.871 3.420  3.196  -1.035 H48 VX9 83 
VX9 H49 H49 H 0 1 N N N N N N 172.416 169.439 170.050 3.159  0.234  -1.726 H49 VX9 84 
VX9 H50 H50 H 0 1 N N N N N N 172.697 168.248 171.366 4.622  1.225  -1.941 H50 VX9 85 
VX9 H51 H51 H 0 1 N N N N N N 175.072 168.535 171.246 4.677  1.674  0.497  H51 VX9 86 
VX9 H52 H52 H 0 1 N N N N N N 173.502 170.801 173.905 7.056  -1.903 1.099  H52 VX9 87 
VX9 H53 H53 H 0 1 N N N N N N 174.987 170.191 174.712 6.928  -2.097 -0.666 H53 VX9 88 
VX9 H54 H54 H 0 1 N N N N N N 174.527 172.992 173.579 8.750  -0.445 -0.980 H54 VX9 89 
VX9 H55 H55 H 0 1 N N N N N N 174.619 172.526 175.312 8.878  -0.251 0.785  H55 VX9 90 
VX9 H56 H56 H 0 1 N N N N N N 178.169 172.198 174.927 11.418 -2.771 -0.019 H56 VX9 91 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VX9 CAA CAB SING N N 1  
VX9 CAB CAC SING N N 2  
VX9 CAB CAD SING N N 3  
VX9 CAD CAE SING N N 4  
VX9 CAE CAF SING N N 5  
VX9 CAF CAG SING N N 6  
VX9 CAG CAH SING N N 7  
VX9 CAG CAI SING N N 8  
VX9 CAI CAJ SING N N 9  
VX9 CAI CAM SING N N 10 
VX9 CAJ CAK SING N N 11 
VX9 CAK CAL SING N N 12 
VX9 CAL CAR SING N N 13 
VX9 CAM CAN SING N N 14 
VX9 CAM CAO SING N N 15 
VX9 CAO CAP SING N N 16 
VX9 CAQ CAR SING N N 17 
VX9 CAQ CAW SING N N 18 
VX9 CAR CAS SING N N 19 
VX9 CAS CAT SING N N 20 
VX9 CAT CAU SING N N 21 
VX9 CAU CAV SING N N 22 
VX9 CAU CAW SING N N 23 
VX9 CAV CBA SING N N 24 
VX9 CAW CAX SING N N 25 
VX9 CAW CAY SING N N 26 
VX9 CAY CAZ SING N N 27 
VX9 CAZ CBA SING N N 28 
VX9 CBA OBB SING N N 29 
VX9 CBC CBE SING N N 30 
VX9 CBC OBB SING N N 31 
VX9 CBC OBD DOUB N N 32 
VX9 CBE CBF SING N N 33 
VX9 CBF CBG SING N N 34 
VX9 CBG OBH DOUB N N 35 
VX9 CBG OBI SING N N 36 
VX9 CAA H1  SING N N 37 
VX9 CAA H2  SING N N 38 
VX9 CAA H3  SING N N 39 
VX9 CAB H4  SING N N 40 
VX9 CAC H5  SING N N 41 
VX9 CAC H6  SING N N 42 
VX9 CAC H7  SING N N 43 
VX9 CAD H8  SING N N 44 
VX9 CAD H9  SING N N 45 
VX9 CAE H10 SING N N 46 
VX9 CAE H11 SING N N 47 
VX9 CAF H12 SING N N 48 
VX9 CAF H13 SING N N 49 
VX9 CAG H14 SING N N 50 
VX9 CAH H15 SING N N 51 
VX9 CAH H16 SING N N 52 
VX9 CAH H17 SING N N 53 
VX9 CAI H18 SING N N 54 
VX9 CAJ H19 SING N N 55 
VX9 CAJ H20 SING N N 56 
VX9 CAK H21 SING N N 57 
VX9 CAK H22 SING N N 58 
VX9 CAL H23 SING N N 59 
VX9 CAL H24 SING N N 60 
VX9 CAM H25 SING N N 61 
VX9 CAN H26 SING N N 62 
VX9 CAN H27 SING N N 63 
VX9 CAN H28 SING N N 64 
VX9 CAO H29 SING N N 65 
VX9 CAO H30 SING N N 66 
VX9 CAP H31 SING N N 67 
VX9 CAP H32 SING N N 68 
VX9 CAP H33 SING N N 69 
VX9 CAQ H34 SING N N 70 
VX9 CAQ H35 SING N N 71 
VX9 CAR H36 SING N N 72 
VX9 CAS H37 SING N N 73 
VX9 CAS H38 SING N N 74 
VX9 CAT H39 SING N N 75 
VX9 CAT H40 SING N N 76 
VX9 CAU H41 SING N N 77 
VX9 CAV H42 SING N N 78 
VX9 CAV H43 SING N N 79 
VX9 CAX H44 SING N N 80 
VX9 CAX H45 SING N N 81 
VX9 CAX H46 SING N N 82 
VX9 CAY H47 SING N N 83 
VX9 CAY H48 SING N N 84 
VX9 CAZ H49 SING N N 85 
VX9 CAZ H50 SING N N 86 
VX9 CBA H51 SING N N 87 
VX9 CBE H52 SING N N 88 
VX9 CBE H53 SING N N 89 
VX9 CBF H54 SING N N 90 
VX9 CBF H55 SING N N 91 
VX9 OBI H56 SING N N 92 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VX9 InChI            InChI                1.06  "InChI=1S/C31H56O4/c1-7-23(4)28(24(5)11-8-10-22(2)3)13-9-12-25-14-15-26-20-27(18-19-31(26,6)21-25)35-30(34)17-16-29(32)33/h22-28H,7-21H2,1-6H3,(H,32,33)/t23-,24+,25-,26-,27-,28-,31+/m0/s1" 
VX9 InChIKey         InChI                1.06  CAWMEKGHGQMGSF-ZGQNKYPXSA-N                                                                                                                                                                  
VX9 SMILES_CANONICAL CACTVS               3.385 "CC[C@H](C)[C@H](CCC[C@H]1CC[C@H]2C[C@H](CC[C@]2(C)C1)OC(=O)CCC(O)=O)[C@H](C)CCCC(C)C"                                                                                                       
VX9 SMILES           CACTVS               3.385 "CC[CH](C)[CH](CCC[CH]1CC[CH]2C[CH](CC[C]2(C)C1)OC(=O)CCC(O)=O)[CH](C)CCCC(C)C"                                                                                                              
VX9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@H](C)[C@H](CCC[C@H]1CC[C@H]2C[C@H](CC[C@@]2(C1)C)OC(=O)CCC(=O)O)[C@H](C)CCCC(C)C"                                                                                                      
VX9 SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(C)C(CCCC1CCC2CC(CCC2(C1)C)OC(=O)CCC(=O)O)C(C)CCCC(C)C"                                                                                                                                  
# 
_pdbx_chem_comp_identifier.comp_id           VX9 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "4-[[(2~{S},4~{a}~{R},6~{S},8~{a}~{S})-6-[(4~{S},5~{R})-4-[(2~{S})-butan-2-yl]-5,9-dimethyl-decyl]-4~{a}-methyl-2,3,4,5,6,7,8,8~{a}-octahydro-1~{H}-naphthalen-2-yl]oxy]-4-oxidanylidene-butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VX9 "Create component" 2023-09-02 PDBJ 
VX9 "Initial release"  2024-04-10 RCSB 
# 
