data_VP9
# 
_chem_comp.id                                    VP9 
_chem_comp.name                                  "4-azanyl-2-[(3~{S})-2,6-bis(oxidanylidene)piperidin-3-yl]-7-methoxy-isoindole-1,3-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H13 N3 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-03-24 
_chem_comp.pdbx_modified_date                    2023-07-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        303.270 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VP9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8OJH 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VP9 C1  C1  C 0 1 Y N N 8.619  58.833 -3.483 2.767  -1.202 -0.063 C1  VP9 1  
VP9 C2  C2  C 0 1 Y N N 8.755  59.716 -2.427 4.046  -0.644 -0.010 C2  VP9 2  
VP9 C3  C3  C 0 1 Y N N 9.144  59.246 -1.186 4.214  0.720  0.024  C3  VP9 3  
VP9 C4  C4  C 0 1 Y N N 9.414  57.894 -0.966 3.105  1.572  0.006  C4  VP9 4  
VP9 C5  C5  C 0 1 Y N N 9.286  57.010 -2.063 1.823  1.032  -0.047 C5  VP9 5  
VP9 C6  C6  C 0 1 Y N N 8.882  57.475 -3.301 1.653  -0.371 -0.081 C6  VP9 6  
VP9 O2  O1  O 0 1 N N N 10.596 50.014 -3.365 -5.578 -0.901 -0.145 O2  VP9 7  
VP9 O3  O2  O 0 1 N N N 7.560  53.229 -2.518 -1.879 0.041  2.064  O3  VP9 8  
VP9 O4  O3  O 0 1 N N N 9.896  54.771 -1.325 0.194  2.787  -0.062 O4  VP9 9  
VP9 N1  N1  N 0 1 N N N 9.131  51.663 -2.934 -3.731 -0.428 0.963  N1  VP9 10 
VP9 C7  C7  C 0 1 N N N 8.817  56.327 -4.231 0.199  -0.600 -0.133 C7  VP9 11 
VP9 C8  C8  C 0 1 N N S 9.298  53.859 -4.026 -1.876 0.771  -0.171 C8  VP9 12 
VP9 C9  C9  C 0 1 N N N 10.760 53.523 -4.198 -2.432 0.136  -1.450 C9  VP9 13 
VP9 C10 C10 C 0 1 N N N 10.900 52.057 -4.564 -3.963 0.240  -1.417 C10 VP9 14 
VP9 C11 C11 C 0 1 N N N 10.219 51.158 -3.583 -4.474 -0.400 -0.154 C11 VP9 15 
VP9 C12 C12 C 0 1 N N N 8.595  52.908 -3.083 -2.500 0.102  1.025  C12 VP9 16 
VP9 C13 C13 C 0 1 N N N 9.514  55.550 -2.171 0.466  1.602  -0.079 C13 VP9 17 
VP9 N2  N2  N 0 1 N N N 9.759  57.444 0.275  3.281  2.948  0.041  N2  VP9 18 
VP9 N   N3  N 0 1 N N N 9.211  55.209 -3.492 -0.423 0.594  -0.128 N   VP9 19 
VP9 O1  O4  O 0 1 N N N 8.469  56.303 -5.389 -0.348 -1.684 -0.173 O1  VP9 20 
VP9 O   O5  O 0 1 N N N 8.239  59.196 -4.741 2.612  -2.549 -0.101 O   VP9 21 
VP9 C   C14 C 0 1 N N N 8.027  60.578 -4.984 3.803  -3.339 -0.079 C   VP9 22 
VP9 H1  H1  H 0 1 N N N 8.558  60.768 -2.571 4.912  -1.290 0.004  H1  VP9 23 
VP9 H2  H2  H 0 1 N N N 9.241  59.942 -0.366 5.209  1.137  0.064  H2  VP9 24 
VP9 H3  H3  H 0 1 N N N 8.679  51.056 -2.280 -4.100 -0.843 1.758  H3  VP9 25 
VP9 H4  H4  H 0 1 N N N 8.804  53.817 -5.008 -2.114 1.835  -0.159 H4  VP9 26 
VP9 H5  H5  H 0 1 N N N 11.295 53.719 -3.257 -2.049 0.669  -2.320 H5  VP9 27 
VP9 H6  H6  H 0 1 N N N 11.188 54.144 -4.999 -2.131 -0.910 -1.500 H6  VP9 28 
VP9 H7  H7  H 0 1 N N N 10.456 51.897 -5.558 -4.258 1.289  -1.442 H7  VP9 29 
VP9 H8  H8  H 0 1 N N N 11.969 51.801 -4.595 -4.382 -0.278 -2.281 H8  VP9 30 
VP9 H9  H9  H 0 1 N N N 9.797  58.215 0.911  4.176  3.322  0.078  H9  VP9 31 
VP9 H10 H10 H 0 1 N N N 9.077  56.785 0.592  2.510  3.537  0.029  H10 VP9 32 
VP9 H11 H11 H 0 1 N N N 7.727  60.725 -6.032 4.420  -3.091 -0.942 H11 VP9 33 
VP9 H12 H12 H 0 1 N N N 7.233  60.949 -4.320 4.358  -3.134 0.837  H12 VP9 34 
VP9 H13 H13 H 0 1 N N N 8.957  61.132 -4.788 3.538  -4.396 -0.114 H13 VP9 35 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VP9 O1  C7  DOUB N N 1  
VP9 C   O   SING N N 2  
VP9 O   C1  SING N N 3  
VP9 C10 C9  SING N N 4  
VP9 C10 C11 SING N N 5  
VP9 C7  N   SING N N 6  
VP9 C7  C6  SING N N 7  
VP9 C9  C8  SING N N 8  
VP9 C8  N   SING N N 9  
VP9 C8  C12 SING N N 10 
VP9 C11 O2  DOUB N N 11 
VP9 C11 N1  SING N N 12 
VP9 N   C13 SING N N 13 
VP9 C1  C6  DOUB Y N 14 
VP9 C1  C2  SING Y N 15 
VP9 C6  C5  SING Y N 16 
VP9 C12 N1  SING N N 17 
VP9 C12 O3  DOUB N N 18 
VP9 C2  C3  DOUB Y N 19 
VP9 C13 C5  SING N N 20 
VP9 C13 O4  DOUB N N 21 
VP9 C5  C4  DOUB Y N 22 
VP9 C3  C4  SING Y N 23 
VP9 C4  N2  SING N N 24 
VP9 C2  H1  SING N N 25 
VP9 C3  H2  SING N N 26 
VP9 N1  H3  SING N N 27 
VP9 C8  H4  SING N N 28 
VP9 C9  H5  SING N N 29 
VP9 C9  H6  SING N N 30 
VP9 C10 H7  SING N N 31 
VP9 C10 H8  SING N N 32 
VP9 N2  H9  SING N N 33 
VP9 N2  H10 SING N N 34 
VP9 C   H11 SING N N 35 
VP9 C   H12 SING N N 36 
VP9 C   H13 SING N N 37 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VP9 InChI            InChI                1.06  "InChI=1S/C14H13N3O5/c1-22-8-4-2-6(15)10-11(8)14(21)17(13(10)20)7-3-5-9(18)16-12(7)19/h2,4,7H,3,5,15H2,1H3,(H,16,18,19)/t7-/m0/s1" 
VP9 InChIKey         InChI                1.06  JQKAGYPIPZUGHW-ZETCQYMHSA-N                                                                                                        
VP9 SMILES_CANONICAL CACTVS               3.385 "COc1ccc(N)c2C(=O)N([C@H]3CCC(=O)NC3=O)C(=O)c12"                                                                                   
VP9 SMILES           CACTVS               3.385 "COc1ccc(N)c2C(=O)N([CH]3CCC(=O)NC3=O)C(=O)c12"                                                                                    
VP9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccc(c2c1C(=O)N(C2=O)[C@H]3CCC(=O)NC3=O)N"                                                                                     
VP9 SMILES           "OpenEye OEToolkits" 2.0.7 "COc1ccc(c2c1C(=O)N(C2=O)C3CCC(=O)NC3=O)N"                                                                                         
# 
_pdbx_chem_comp_identifier.comp_id           VP9 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "4-azanyl-2-[(3~{S})-2,6-bis(oxidanylidene)piperidin-3-yl]-7-methoxy-isoindole-1,3-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VP9 "Create component" 2023-03-24 PDBE 
VP9 "Initial release"  2023-07-19 RCSB 
# 
