data_VI9
# 
_chem_comp.id                                    VI9 
_chem_comp.name                                  "2-({(3P)-4-cyclopropyl-5-methyl-3-[3-(trifluoromethyl)-1,2,4-oxadiazol-5-yl]thiophen-2-yl}carbamoyl)cyclopent-1-ene-1-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H16 F3 N3 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-05-09 
_chem_comp.pdbx_modified_date                    2023-06-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        427.398 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VI9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7FY8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VI9 C01 C1  C 0 1 Y N N -0.153 13.977 -36.918 2.385  3.010  0.196  C01 VI9 1  
VI9 C02 C2  C 0 1 Y N N 0.682  14.853 -37.770 2.710  1.726  0.249  C02 VI9 2  
VI9 C04 C3  C 0 1 N N N 0.376  12.923 -35.925 3.360  4.146  0.369  C04 VI9 3  
VI9 C06 C4  C 0 1 Y N N -1.683 15.331 -38.347 0.410  1.474  -0.152 C06 VI9 4  
VI9 C07 C5  C 0 1 Y N N -0.310 15.719 -38.652 1.601  0.824  0.054  C07 VI9 5  
VI9 C11 C6  C 0 1 Y N N -0.159 17.827 -41.637 1.350  -2.726 -0.002 C11 VI9 6  
VI9 C15 C7  C 0 1 N N N 3.031  15.523 -36.875 5.237  1.904  -0.320 C15 VI9 7  
VI9 C16 C8  C 0 1 N N N -0.578 18.153 -43.025 0.666  -4.064 -0.119 C16 VI9 8  
VI9 C17 C9  C 0 1 N N N -4.149 15.759 -38.488 -1.919 1.596  -0.557 C17 VI9 9  
VI9 C19 C10 C 0 1 N N N -5.265 16.601 -39.053 -3.218 0.936  -0.785 C19 VI9 10 
VI9 C20 C11 C 0 1 N N N -5.098 17.523 -40.164 -3.865 0.751  -2.138 C20 VI9 11 
VI9 C21 C12 C 0 1 N N N -6.490 18.255 -40.239 -5.343 0.421  -1.831 C21 VI9 12 
VI9 C22 C13 C 0 1 N N N -7.433 17.506 -39.204 -5.247 -0.181 -0.411 C22 VI9 13 
VI9 C23 C14 C 0 1 N N N -6.541 16.609 -38.495 -3.988 0.410  0.179  C23 VI9 14 
VI9 C24 C15 C 0 1 N N N -6.950 15.738 -37.312 -3.654 0.412  1.615  C24 VI9 15 
VI9 C03 C16 C 0 1 N N N 2.194  14.813 -37.894 4.118  1.249  0.493  C03 VI9 16 
VI9 S05 S1  S 0 1 Y N N -1.685 14.259 -37.221 0.668  3.211  -0.110 S05 VI9 17 
VI9 N08 N1  N 0 1 N N N -2.796 16.018 -38.922 -0.810 0.854  -0.366 N08 VI9 18 
VI9 C09 C17 C 0 1 Y N N -0.021 16.775 -39.744 1.733  -0.639 0.072  C09 VI9 19 
VI9 N10 N2  N 0 1 Y N N -0.612 16.747 -40.952 0.762  -1.525 -0.100 N10 VI9 20 
VI9 N12 N3  N 0 1 Y N N 0.690  18.537 -40.855 2.617  -2.529 0.219  N12 VI9 21 
VI9 O13 O1  O 0 1 Y N N 0.743  17.891 -39.646 2.862  -1.342 0.261  O13 VI9 22 
VI9 C14 C18 C 0 1 N N N 3.003  16.019 -38.301 4.805  0.470  -0.632 C14 VI9 23 
VI9 O18 O2  O 0 1 N N N -4.366 14.869 -37.671 -1.848 2.809  -0.541 O18 VI9 24 
VI9 O25 O3  O 0 1 N N N -7.496 14.617 -37.537 -2.575 0.827  1.987  O25 VI9 25 
VI9 O26 O4  O 0 1 N N N -6.688 16.072 -36.094 -4.546 -0.047 2.515  O26 VI9 26 
VI9 F27 F1  F 0 1 N N N -0.230 19.411 -43.302 1.510  -5.064 0.375  F27 VI9 27 
VI9 F28 F2  F 0 1 N N N 0.041  17.322 -43.858 -0.521 -4.047 0.621  F28 VI9 28 
VI9 F29 F3  F 0 1 N N N -1.904 17.987 -43.105 0.374  -4.322 -1.463 F29 VI9 29 
VI9 H33 H1  H 0 1 N N N -0.472 12.398 -35.460 3.839  4.362  -0.586 H33 VI9 30 
VI9 H32 H2  H 0 1 N N N 1.006  12.198 -36.461 2.828  5.031  0.718  H32 VI9 31 
VI9 H31 H3  H 0 1 N N N 0.971  13.420 -35.145 4.118  3.866  1.100  H31 VI9 32 
VI9 H38 H4  H 0 1 N N N 2.548  16.110 -36.080 4.954  2.681  -1.031 H38 VI9 33 
VI9 H37 H5  H 0 1 N N N 3.938  15.043 -36.478 6.200  2.045  0.170  H37 VI9 34 
VI9 H40 H6  H 0 1 N N N -4.287 18.238 -39.964 -3.794 1.669  -2.720 H40 VI9 35 
VI9 H39 H7  H 0 1 N N N -4.887 16.981 -41.098 -3.396 -0.075 -2.673 H39 VI9 36 
VI9 H42 H8  H 0 1 N N N -6.381 19.314 -39.960 -5.952 1.326  -1.830 H42 VI9 37 
VI9 H41 H9  H 0 1 N N N -6.905 18.184 -41.255 -5.735 -0.310 -2.539 H41 VI9 38 
VI9 H44 H10 H 0 1 N N N -7.898 18.222 -38.511 -6.117 0.104  0.181  H44 VI9 39 
VI9 H43 H11 H 0 1 N N N -8.218 16.942 -39.729 -5.163 -1.266 -0.465 H43 VI9 40 
VI9 H30 H12 H 0 1 N N N 2.599  13.850 -38.237 4.345  0.958  1.518  H30 VI9 41 
VI9 H34 H13 H 0 1 N N N -2.635 16.694 -39.641 -0.867 -0.115 -0.379 H34 VI9 42 
VI9 H35 H14 H 0 1 N N N 3.887  15.898 -38.944 4.238  0.302  -1.547 H35 VI9 43 
VI9 H36 H15 H 0 1 N N N 2.498  16.965 -38.546 5.484  -0.333 -0.345 H36 VI9 44 
VI9 H1  H16 H 0 1 N N N -6.964 15.377 -35.508 -4.282 -0.026 3.445  H1  VI9 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VI9 C01 C02 DOUB Y N 1  
VI9 C02 C03 SING N N 2  
VI9 C01 C04 SING N N 3  
VI9 C01 S05 SING Y N 4  
VI9 S05 C06 SING Y N 5  
VI9 C02 C07 SING Y N 6  
VI9 C06 C07 DOUB Y N 7  
VI9 C06 N08 SING N N 8  
VI9 C07 C09 SING N N 9  
VI9 C09 N10 DOUB Y N 10 
VI9 N10 C11 SING Y N 11 
VI9 C11 N12 DOUB Y N 12 
VI9 C09 O13 SING Y N 13 
VI9 N12 O13 SING Y N 14 
VI9 C03 C14 SING N N 15 
VI9 C03 C15 SING N N 16 
VI9 C14 C15 SING N N 17 
VI9 C11 C16 SING N N 18 
VI9 N08 C17 SING N N 19 
VI9 C17 O18 DOUB N N 20 
VI9 C17 C19 SING N N 21 
VI9 C19 C20 SING N N 22 
VI9 C20 C21 SING N N 23 
VI9 C21 C22 SING N N 24 
VI9 C19 C23 DOUB N N 25 
VI9 C22 C23 SING N N 26 
VI9 C23 C24 SING N N 27 
VI9 C24 O25 DOUB N N 28 
VI9 C24 O26 SING N N 29 
VI9 C16 F27 SING N N 30 
VI9 C16 F28 SING N N 31 
VI9 C16 F29 SING N N 32 
VI9 C04 H33 SING N N 33 
VI9 C04 H32 SING N N 34 
VI9 C04 H31 SING N N 35 
VI9 C15 H38 SING N N 36 
VI9 C15 H37 SING N N 37 
VI9 C20 H40 SING N N 38 
VI9 C20 H39 SING N N 39 
VI9 C21 H42 SING N N 40 
VI9 C21 H41 SING N N 41 
VI9 C22 H44 SING N N 42 
VI9 C22 H43 SING N N 43 
VI9 C03 H30 SING N N 44 
VI9 N08 H34 SING N N 45 
VI9 C14 H35 SING N N 46 
VI9 C14 H36 SING N N 47 
VI9 O26 H1  SING N N 48 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VI9 SMILES           ACDLabs              12.01 "O=C(Nc1sc(C)c(c1c1nc(no1)C(F)(F)F)C1CC1)C=1CCCC=1C(=O)O"                                                                                         
VI9 InChI            InChI                1.06  "InChI=1S/C18H16F3N3O4S/c1-7-11(8-5-6-8)12(14-23-17(24-28-14)18(19,20)21)15(29-7)22-13(25)9-3-2-4-10(9)16(26)27/h8H,2-6H2,1H3,(H,22,25)(H,26,27)" 
VI9 InChIKey         InChI                1.06  JKQLCIPECSRXPD-UHFFFAOYSA-N                                                                                                                       
VI9 SMILES_CANONICAL CACTVS               3.385 "Cc1sc(NC(=O)C2=C(CCC2)C(O)=O)c(c3onc(n3)C(F)(F)F)c1C4CC4"                                                                                        
VI9 SMILES           CACTVS               3.385 "Cc1sc(NC(=O)C2=C(CCC2)C(O)=O)c(c3onc(n3)C(F)(F)F)c1C4CC4"                                                                                        
VI9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(s1)NC(=O)C2=C(CCC2)C(=O)O)c3nc(no3)C(F)(F)F)C4CC4"                                                                                      
VI9 SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(s1)NC(=O)C2=C(CCC2)C(=O)O)c3nc(no3)C(F)(F)F)C4CC4"                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VI9 "SYSTEMATIC NAME" ACDLabs              12.01 "2-({(3P)-4-cyclopropyl-5-methyl-3-[3-(trifluoromethyl)-1,2,4-oxadiazol-5-yl]thiophen-2-yl}carbamoyl)cyclopent-1-ene-1-carboxylic acid" 
VI9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[[4-cyclopropyl-5-methyl-3-[3-(trifluoromethyl)-1,2,4-oxadiazol-5-yl]thiophen-2-yl]carbamoyl]cyclopentene-1-carboxylic acid"         
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VI9 "Create component" 2023-05-09 RCSB 
VI9 "Initial release"  2023-06-14 RCSB 
# 
