data_VE9
# 
_chem_comp.id                                    VE9 
_chem_comp.name                                  "N-{1-[(1R,2S)-2-fluorocyclopropyl]-2-oxo-1,2-dihydropyridin-3-yl}-2-[(1R,4r)-1-methyl-2-oxabicyclo[2.1.1]hexan-4-yl]-6-[(propan-2-yl)oxy]-2H-pyrazolo[3,4-b]pyridine-5-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H26 F N5 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-09-12 
_chem_comp.pdbx_modified_date                    2024-06-21 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        467.493 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VE9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8TVN 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VE9 N1  N1  N 0 1 N N N N N N 7.502  -10.725 1.475  -2.050 0.850  -0.881 N1  VE9 1  
VE9 N3  N2  N 0 1 Y N N N N N 6.959  -4.318  3.927  4.304  0.557  0.067  N3  VE9 2  
VE9 C4  C1  C 0 1 N N N N N N 6.651  -14.337 1.979  -5.388 1.712  -2.169 C4  VE9 3  
VE9 C5  C2  C 0 1 N N N N N N 7.715  -14.899 1.356  -6.169 1.246  -1.168 C5  VE9 4  
VE9 C6  C3  C 0 1 N N S N N N 9.822  -14.675 0.090  -6.492 0.164  0.997  C6  VE9 5  
VE9 C7  C4  C 0 1 N N N N N N 9.679  -15.974 -0.610 -6.363 0.818  2.374  C7  VE9 6  
VE9 C8  C5  C 0 1 N N R N N N 9.806  -14.716 -1.395 -7.590 1.102  1.505  C8  VE9 7  
VE9 C10 C6  C 0 1 Y N N N N N 7.055  -8.478  2.280  -0.058 -0.501 -0.455 C10 VE9 8  
VE9 C13 C7  C 0 1 Y N N N N N 6.092  -5.350  4.108  3.219  1.304  -0.167 C13 VE9 9  
VE9 C15 C8  C 0 1 N N N N N N 8.092  -2.449  5.342  6.800  0.208  0.819  C15 VE9 10 
VE9 C17 C9  C 0 1 N N N N N N 5.669  -2.575  5.250  5.879  2.433  0.969  C17 VE9 11 
VE9 C20 C10 C 0 1 Y N N N N N 7.820  -5.900  2.801  2.645  -0.908 -0.023 C20 VE9 12 
VE9 C21 C11 C 0 1 Y N N N N N 8.249  -7.910  1.739  0.509  -1.779 -0.242 C21 VE9 13 
VE9 C22 C12 C 0 1 N N N N N N 10.290 -8.309  0.503  0.314  -4.135 -0.030 C22 VE9 14 
VE9 C24 C13 C 0 1 N N N N N N 10.564 -9.061  -0.777 0.328  -4.443 1.469  C24 VE9 15 
VE9 C1  C14 C 0 1 N N N N N N 6.616  -9.898  2.077  -1.509 -0.368 -0.678 C1  VE9 16 
VE9 C11 C15 C 0 1 Y N N N N N 6.236  -7.704  3.082  0.748  0.628  -0.454 C11 VE9 17 
VE9 C12 C16 C 0 1 Y N N N N N 6.607  -6.390  3.350  2.128  0.453  -0.237 C12 VE9 18 
VE9 C14 C17 C 0 1 N N N N N N 6.929  -2.989  4.504  5.666  1.077  0.211  C14 VE9 19 
VE9 C16 C18 C 0 1 N N N N N N 7.343  -1.145  5.012  7.674  1.291  0.140  C16 VE9 20 
VE9 C18 C19 C 0 1 N N N N N N 7.884  0.262   5.173  9.154  1.011  -0.125 C18 VE9 21 
VE9 C19 C20 C 0 1 N N N N N N 7.179  -1.750  3.598  6.641  1.088  -1.007 C19 VE9 22 
VE9 C2  C21 C 0 1 N N N N N N 7.499  -12.122 1.467  -3.440 0.989  -0.988 C2  VE9 23 
VE9 C23 C22 C 0 1 N N N N N N 11.197 -8.649  1.650  -0.477 -5.218 -0.766 C23 VE9 24 
VE9 C3  C23 C 0 1 N N N N N N 6.514  -12.949 2.056  -3.994 1.585  -2.088 C3  VE9 25 
VE9 C9  C24 C 0 1 N N N N N N 8.588  -12.711 0.838  -4.286 0.525  0.043  C9  VE9 26 
VE9 F1  F1  F 0 1 N N N N N N 8.727  -14.202 -2.042 -7.684 2.366  0.913  F1  VE9 27 
VE9 N2  N3  N 0 1 N N N N N N 8.665  -14.094 0.771  -5.621 0.659  -0.072 N2  VE9 28 
VE9 N4  N4  N 0 1 Y N N N N N 8.051  -4.632  3.149  3.946  -0.792 0.159  N4  VE9 29 
VE9 N5  N5  N 0 1 Y N N N N N 8.601  -6.662  1.986  1.793  -1.949 -0.039 N5  VE9 30 
VE9 O1  O1  O 0 1 N N N N N N 5.579  -10.302 2.582  -2.217 -1.357 -0.679 O1  VE9 31 
VE9 O2  O2  O 0 1 N N N N N N 9.476  -12.037 0.278  -3.808 -0.002 1.035  O2  VE9 32 
VE9 O3  O3  O 0 1 N N N N N N 6.089  -1.277  5.653  7.343  2.516  0.863  O3  VE9 33 
VE9 O4  O4  O 0 1 N N N N N N 8.988  -8.738  0.944  -0.302 -2.864 -0.249 O4  VE9 34 
VE9 H1  H1  H 0 1 N N N N N N 8.248  -10.283 0.976  -1.478 1.630  -0.950 H1  VE9 35 
VE9 H3  H2  H 0 1 N N N N N N 5.898  -14.971 2.422  -5.838 2.176  -3.034 H3  VE9 36 
VE9 H4  H3  H 0 1 N N N N N N 7.817  -15.974 1.319  -7.243 1.343  -1.240 H4  VE9 37 
VE9 H5  H4  H 0 1 N N N N N N 10.802 -14.486 0.552  -6.717 -0.902 0.965  H5  VE9 38 
VE9 H6  H5  H 0 1 N N N N N N 10.505 -16.700 -0.597 -6.502 0.183  3.248  H6  VE9 39 
VE9 H7  H6  H 0 1 N N N N N N 8.719  -16.511 -0.583 -5.629 1.617  2.485  H7  VE9 40 
VE9 H8  H7  H 0 1 N N N N N N 10.789 -14.570 -1.867 -8.536 0.653  1.807  H8  VE9 41 
VE9 H10 H8  H 0 1 N N N N N N 5.196  -5.358  4.711  3.198  2.378  -0.279 H10 VE9 42 
VE9 H11 H9  H 0 1 N N N N N N 8.112  -2.747  6.401  6.839  0.213  1.908  H11 VE9 43 
VE9 H12 H10 H 0 1 N N N N N N 9.098  -2.558  4.911  6.892  -0.787 0.384  H12 VE9 44 
VE9 H13 H11 H 0 1 N N N N N N 5.460  -3.230  6.109  5.402  3.261  0.445  H13 VE9 45 
VE9 H14 H12 H 0 1 N N N N N N 4.788  -2.541  4.592  5.537  2.370  2.002  H14 VE9 46 
VE9 H20 H13 H 0 1 N N N N N N 10.307 -7.225  0.315  1.337  -4.113 -0.406 H20 VE9 47 
VE9 H25 H14 H 0 1 N N N N N N 11.552 -8.775  -1.167 0.798  -5.413 1.636  H25 VE9 48 
VE9 H26 H15 H 0 1 N N N N N N 10.548 -10.143 -0.577 0.892  -3.672 1.993  H26 VE9 49 
VE9 H24 H16 H 0 1 N N N N N N 9.791  -8.814  -1.520 -0.695 -4.465 1.845  H24 VE9 50 
VE9 H9  H17 H 0 1 N N N N N N 5.325  -8.112  3.493  0.331  1.610  -0.616 H9  VE9 51 
VE9 H17 H18 H 0 1 N N N N N N 7.120  0.988   4.856  9.249  0.144  -0.778 H17 VE9 52 
VE9 H15 H19 H 0 1 N N N N N N 8.141  0.437   6.228  9.608  1.878  -0.606 H15 VE9 53 
VE9 H16 H20 H 0 1 N N N N N N 8.784  0.382   4.552  9.661  0.813  0.819  H16 VE9 54 
VE9 H19 H21 H 0 1 N N N N N N 6.324  -1.393  3.005  6.726  0.136  -1.530 H19 VE9 55 
VE9 H18 H22 H 0 1 N N N N N N 8.079  -1.776  2.966  6.527  1.944  -1.672 H18 VE9 56 
VE9 H22 H23 H 0 1 N N N N N N 12.228 -8.354  1.403  -1.500 -5.240 -0.389 H22 VE9 57 
VE9 H21 H24 H 0 1 N N N N N N 10.867 -8.110  2.550  -0.488 -4.999 -1.833 H21 VE9 58 
VE9 H23 H25 H 0 1 N N N N N N 11.161 -9.732  1.837  -0.008 -6.188 -0.599 H23 VE9 59 
VE9 H2  H26 H 0 1 N N N N N N 5.665  -12.512 2.560  -3.365 1.954  -2.884 H2  VE9 60 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VE9 O1  C1  DOUB N N 1  
VE9 C1  N1  SING N N 2  
VE9 N1  C2  SING N N 3  
VE9 C2  C3  DOUB N N 4  
VE9 C3  C4  SING N N 5  
VE9 C4  C5  DOUB N N 6  
VE9 C5  N2  SING N N 7  
VE9 N2  C6  SING N N 8  
VE9 C6  C7  SING N N 9  
VE9 C7  C8  SING N N 10 
VE9 C8  F1  SING N N 11 
VE9 N2  C9  SING N N 12 
VE9 C9  O2  DOUB N N 13 
VE9 C1  C10 SING N N 14 
VE9 C10 C11 DOUB Y N 15 
VE9 C11 C12 SING Y N 16 
VE9 C12 C13 DOUB Y N 17 
VE9 C13 N3  SING Y N 18 
VE9 N3  C14 SING N N 19 
VE9 C14 C15 SING N N 20 
VE9 C15 C16 SING N N 21 
VE9 C16 O3  SING N N 22 
VE9 O3  C17 SING N N 23 
VE9 C16 C18 SING N N 24 
VE9 C16 C19 SING N N 25 
VE9 N3  N4  SING Y N 26 
VE9 C12 C20 SING Y N 27 
VE9 C20 N5  SING Y N 28 
VE9 N5  C21 DOUB Y N 29 
VE9 C21 O4  SING N N 30 
VE9 O4  C22 SING N N 31 
VE9 C22 C23 SING N N 32 
VE9 C22 C24 SING N N 33 
VE9 C2  C9  SING N N 34 
VE9 C6  C8  SING N N 35 
VE9 C10 C21 SING Y N 36 
VE9 C14 C17 SING N N 37 
VE9 C14 C19 SING N N 38 
VE9 N4  C20 DOUB Y N 39 
VE9 N1  H1  SING N N 40 
VE9 C4  H3  SING N N 41 
VE9 C5  H4  SING N N 42 
VE9 C6  H5  SING N N 43 
VE9 C7  H6  SING N N 44 
VE9 C7  H7  SING N N 45 
VE9 C8  H8  SING N N 46 
VE9 C13 H10 SING N N 47 
VE9 C15 H11 SING N N 48 
VE9 C15 H12 SING N N 49 
VE9 C17 H13 SING N N 50 
VE9 C17 H14 SING N N 51 
VE9 C22 H20 SING N N 52 
VE9 C24 H25 SING N N 53 
VE9 C24 H26 SING N N 54 
VE9 C24 H24 SING N N 55 
VE9 C11 H9  SING N N 56 
VE9 C18 H17 SING N N 57 
VE9 C18 H15 SING N N 58 
VE9 C18 H16 SING N N 59 
VE9 C19 H19 SING N N 60 
VE9 C19 H18 SING N N 61 
VE9 C23 H22 SING N N 62 
VE9 C23 H21 SING N N 63 
VE9 C23 H23 SING N N 64 
VE9 C3  H2  SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VE9 SMILES           ACDLabs              12.01 "FC1CC1N1C=CC=C(NC(=O)c2cc3cn(nc3nc2OC(C)C)C23CC(C)(C2)OC3)C1=O"                                                                                                                                         
VE9 InChI            InChI                1.06  "InChI=1S/C24H26FN5O4/c1-13(2)34-21-15(20(31)26-17-5-4-6-29(22(17)32)18-8-16(18)25)7-14-9-30(28-19(14)27-21)24-10-23(3,11-24)33-12-24/h4-7,9,13,16,18H,8,10-12H2,1-3H3,(H,26,31)/t16?,18-,23-,24-/m0/s1" 
VE9 InChIKey         InChI                1.06  YRZABOXBJPGNGN-JFHOTQKMSA-N                                                                                                                                                                              
VE9 SMILES_CANONICAL CACTVS               3.385 "CC(C)Oc1nc2nn(cc2cc1C(=O)NC3=CC=CN([C@H]4C[C@H]4F)C3=O)C56COC(C)(C5)C6"                                                                                                                                 
VE9 SMILES           CACTVS               3.385 "CC(C)Oc1nc2nn(cc2cc1C(=O)NC3=CC=CN([CH]4C[CH]4F)C3=O)C56COC(C)(C5)C6"                                                                                                                                   
VE9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)Oc1c(cc2cn(nc2n1)C34CC(C3)(OC4)C)C(=O)NC5=CC=CN(C5=O)[C@H]6C[C@H]6F"                                                                                                                               
VE9 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)Oc1c(cc2cn(nc2n1)C34CC(C3)(OC4)C)C(=O)NC5=CC=CN(C5=O)C6CC6F"                                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VE9 "SYSTEMATIC NAME" ACDLabs              12.01 "N-{1-[(1R,2S)-2-fluorocyclopropyl]-2-oxo-1,2-dihydropyridin-3-yl}-2-[(1R,4r)-1-methyl-2-oxabicyclo[2.1.1]hexan-4-yl]-6-[(propan-2-yl)oxy]-2H-pyrazolo[3,4-b]pyridine-5-carboxamide" 
VE9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[1-[(1~{S},2~{R})-2-fluoranylcyclopropyl]-2-oxidanylidene-pyridin-3-yl]-2-(1-methyl-2-oxabicyclo[2.1.1]hexan-4-yl)-6-propan-2-yloxy-pyrazolo[3,4-b]pyridine-5-carboxamide"     
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VE9 "Create component" 2023-09-12 RCSB 
VE9 "Initial release"  2024-06-26 RCSB 
# 
