data_VA9
# 
_chem_comp.id                                    VA9 
_chem_comp.name                                  "7-[5-(2-acetamidoethyl)-2-oxidanyl-phenyl]-3,5,6,8-tetrakis(oxidanyl)-9,10-bis(oxidanylidene)anthracene-1,2-dicarboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H19 N O12" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-07-11 
_chem_comp.pdbx_modified_date                    2023-08-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        537.429 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VA9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8JYJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VA9 CAA C1  C 0 1 Y N N 10.169 15.231 3.386  -5.253 1.119  -0.273 CAA VA9 1  
VA9 CAB C2  C 0 1 Y N N 10.285 14.670 4.650  -5.647 0.015  -1.039 CAB VA9 2  
VA9 CAC C3  C 0 1 Y N N 11.459 14.183 5.155  -4.781 -1.060 -1.217 CAC VA9 3  
VA9 CAD C4  C 0 1 Y N N 12.594 14.251 4.388  -3.520 -1.046 -0.635 CAD VA9 4  
VA9 CAE C5  C 0 1 Y N N 12.573 14.789 3.087  -3.112 0.057  0.139  CAE VA9 5  
VA9 CAF C6  C 0 1 Y N N 11.346 15.360 2.570  -3.978 1.141  0.320  CAF VA9 6  
VA9 CAG C7  C 0 1 N N N 13.729 13.728 5.001  -2.595 -2.189 -0.823 CAG VA9 7  
VA9 CAH C8  C 0 1 Y N N 14.935 13.733 4.343  -1.176 -2.031 -0.468 CAH VA9 8  
VA9 CAI C9  C 0 1 Y N N 14.975 14.262 3.085  -0.768 -0.922 0.310  CAI VA9 9  
VA9 CAJ C10 C 0 1 N N N 13.852 14.789 2.462  -1.768 0.062  0.755  CAJ VA9 10 
VA9 CAK C11 C 0 1 Y N N 16.110 13.230 4.881  -0.231 -2.967 -0.895 CAK VA9 11 
VA9 CAL C12 C 0 1 Y N N 17.321 13.310 4.199  1.114  -2.806 -0.552 CAL VA9 12 
VA9 CAM C13 C 0 1 Y N N 17.379 13.706 2.858  1.519  -1.715 0.216  CAM VA9 13 
VA9 CAN C14 C 0 1 Y N N 16.181 14.284 2.405  0.576  -0.768 0.649  CAN VA9 14 
VA9 CAQ C15 C 0 1 N N N 11.255 15.887 1.248  -3.555 2.305  1.132  CAQ VA9 15 
VA9 CAT C16 C 0 1 N N N 8.829  15.642 3.172  -6.172 2.260  -0.094 CAT VA9 16 
VA9 CBA C17 C 0 1 Y N N 18.549 13.899 2.092  2.946  -1.555 0.575  CBA VA9 17 
VA9 CBB C18 C 0 1 Y N N 19.812 14.017 2.665  3.803  -0.838 -0.260 CBB VA9 18 
VA9 CBC C19 C 0 1 Y N N 20.957 14.152 1.882  5.131  -0.691 0.080  CBC VA9 19 
VA9 CBD C20 C 0 1 Y N N 20.896 14.014 0.505  5.619  -1.253 1.248  CBD VA9 20 
VA9 CBE C21 C 0 1 Y N N 19.674 13.781 -0.090 4.779  -1.965 2.083  CBE VA9 21 
VA9 CBF C22 C 0 1 Y N N 18.542 13.682 0.701  3.441  -2.116 1.758  CBF VA9 22 
VA9 CBG C23 C 0 1 N N N 22.186 14.413 2.465  6.056  0.083  -0.823 CBG VA9 23 
VA9 CBH C24 C 0 1 N N N 22.289 15.945 2.617  6.052  1.557  -0.414 CBH VA9 24 
VA9 CBJ C25 C 0 1 N N N 21.137 17.395 0.957  7.108  3.637  -1.118 CBJ VA9 25 
VA9 CBL C26 C 0 1 N N N 20.052 17.562 2.023  8.033  4.412  -2.022 CBL VA9 26 
VA9 NBI N1  N 0 1 N N N 22.178 16.611 1.302  6.951  2.310  -1.292 NBI VA9 27 
VA9 OAO O1  O 0 1 N N N 16.132 14.827 1.160  0.972  0.292  1.395  OAO VA9 28 
VA9 OAP O2  O 0 1 N N N 14.071 15.227 1.341  -1.490 0.872  1.620  OAP VA9 29 
VA9 OAR O3  O 0 1 N N N 10.271 16.502 0.821  -3.799 2.326  2.456  OAR VA9 30 
VA9 OAS O4  O 0 1 N N N 12.023 15.538 0.338  -2.989 3.240  0.603  OAS VA9 31 
VA9 OAU O5  O 0 1 N N N 8.406  16.247 2.172  -6.948 2.274  0.840  OAU VA9 32 
VA9 OAV O6  O 0 1 N N N 7.972  15.363 4.035  -6.151 3.286  -0.967 OAV VA9 33 
VA9 OAW O7  O 0 1 N N N 9.158  14.603 5.398  -6.875 -0.006 -1.610 OAW VA9 34 
VA9 OAX O8  O 0 1 N N N 13.654 13.257 6.128  -3.005 -3.245 -1.265 OAX VA9 35 
VA9 OAY O9  O 0 1 N N N 16.087 12.700 6.134  -0.619 -4.031 -1.641 OAY VA9 36 
VA9 OAZ O10 O 0 1 N N N 18.402 12.736 4.796  2.031  -3.717 -0.968 OAZ VA9 37 
VA9 OBK O11 O 0 1 N N N 21.027 17.949 -0.137 6.505  4.208  -0.234 OBK VA9 38 
VA9 OBM O12 O 0 1 N N N 17.351 13.452 0.093  2.615  -2.816 2.578  OBM VA9 39 
VA9 H1  H1  H 0 1 N N N 11.492 13.751 6.144  -5.091 -1.909 -1.809 H1  VA9 40 
VA9 H2  H2  H 0 1 N N N 19.907 14.004 3.741  3.426  -0.400 -1.172 H2  VA9 41 
VA9 H3  H3  H 0 1 N N N 21.792 14.088 -0.094 6.660  -1.134 1.508  H3  VA9 42 
VA9 H4  H4  H 0 1 N N N 19.601 13.677 -1.162 5.166  -2.401 2.992  H4  VA9 43 
VA9 H5  H5  H 0 1 N N N 22.248 13.929 3.451  7.067  -0.315 -0.736 H5  VA9 44 
VA9 H6  H6  H 0 1 N N N 22.997 14.041 1.822  5.717  -0.009 -1.855 H6  VA9 45 
VA9 H7  H7  H 0 1 N N N 23.259 16.198 3.069  5.041  1.956  -0.501 H7  VA9 46 
VA9 H8  H8  H 0 1 N N N 21.477 16.298 3.270  6.391  1.649  0.618  H8  VA9 47 
VA9 H9  H9  H 0 1 N N N 19.252 18.210 1.635  7.477  4.775  -2.885 H9  VA9 48 
VA9 H10 H10 H 0 1 N N N 19.634 16.577 2.278  8.450  5.258  -1.475 H10 VA9 49 
VA9 H11 H11 H 0 1 N N N 20.489 18.019 2.923  8.841  3.762  -2.357 H11 VA9 50 
VA9 H12 H12 H 0 1 N N N 22.911 16.473 0.636  7.433  1.853  -1.999 H12 VA9 51 
VA9 H13 H13 H 0 1 N N N 15.245 15.112 0.973  1.220  1.068  0.876  H13 VA9 52 
VA9 H14 H14 H 0 1 N N N 10.326 16.570 -0.125 -3.504 3.107  2.944  H14 VA9 53 
VA9 H15 H15 H 0 1 N N N 7.122  15.680 3.752  -6.771 4.011  -0.808 H15 VA9 54 
VA9 H16 H16 H 0 1 N N N 9.357  14.204 6.237  -6.903 0.373  -2.500 H16 VA9 55 
VA9 H17 H17 H 0 1 N N N 15.205 12.751 6.484  -0.600 -3.870 -2.595 H17 VA9 56 
VA9 H18 H18 H 0 1 N N N 18.193 12.530 5.700  2.428  -3.511 -1.825 H18 VA9 57 
VA9 H19 H19 H 0 1 N N N 16.664 13.407 0.748  2.185  -2.277 3.256  H19 VA9 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VA9 OBK CBJ DOUB N N 1  
VA9 CBE CBD DOUB Y N 2  
VA9 CBE CBF SING Y N 3  
VA9 OBM CBF SING N N 4  
VA9 OAS CAQ DOUB N N 5  
VA9 CBD CBC SING Y N 6  
VA9 CBF CBA DOUB Y N 7  
VA9 OAR CAQ SING N N 8  
VA9 CBJ NBI SING N N 9  
VA9 CBJ CBL SING N N 10 
VA9 OAO CAN SING N N 11 
VA9 CAQ CAF SING N N 12 
VA9 NBI CBH SING N N 13 
VA9 OAP CAJ DOUB N N 14 
VA9 CBC CBG SING N N 15 
VA9 CBC CBB DOUB Y N 16 
VA9 CBA CBB SING Y N 17 
VA9 CBA CAM SING N N 18 
VA9 OAU CAT DOUB N N 19 
VA9 CAN CAM DOUB Y N 20 
VA9 CAN CAI SING Y N 21 
VA9 CAJ CAI SING N N 22 
VA9 CAJ CAE SING N N 23 
VA9 CBG CBH SING N N 24 
VA9 CAF CAE DOUB Y N 25 
VA9 CAF CAA SING Y N 26 
VA9 CAM CAL SING Y N 27 
VA9 CAI CAH DOUB Y N 28 
VA9 CAE CAD SING Y N 29 
VA9 CAT CAA SING N N 30 
VA9 CAT OAV SING N N 31 
VA9 CAA CAB DOUB Y N 32 
VA9 CAL OAZ SING N N 33 
VA9 CAL CAK DOUB Y N 34 
VA9 CAH CAK SING Y N 35 
VA9 CAH CAG SING N N 36 
VA9 CAD CAG SING N N 37 
VA9 CAD CAC DOUB Y N 38 
VA9 CAB CAC SING Y N 39 
VA9 CAB OAW SING N N 40 
VA9 CAK OAY SING N N 41 
VA9 CAG OAX DOUB N N 42 
VA9 CAC H1  SING N N 43 
VA9 CBB H2  SING N N 44 
VA9 CBD H3  SING N N 45 
VA9 CBE H4  SING N N 46 
VA9 CBG H5  SING N N 47 
VA9 CBG H6  SING N N 48 
VA9 CBH H7  SING N N 49 
VA9 CBH H8  SING N N 50 
VA9 CBL H9  SING N N 51 
VA9 CBL H10 SING N N 52 
VA9 CBL H11 SING N N 53 
VA9 NBI H12 SING N N 54 
VA9 OAO H13 SING N N 55 
VA9 OAR H14 SING N N 56 
VA9 OAV H15 SING N N 57 
VA9 OAW H16 SING N N 58 
VA9 OAY H17 SING N N 59 
VA9 OAZ H18 SING N N 60 
VA9 OBM H19 SING N N 61 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VA9 InChI            InChI                1.06  "InChI=1S/C26H19NO12/c1-8(28)27-5-4-9-2-3-12(29)10(6-9)15-22(33)19-18(24(35)23(15)34)20(31)11-7-13(30)16(25(36)37)17(26(38)39)14(11)21(19)32/h2-3,6-7,29-30,33-35H,4-5H2,1H3,(H,27,28)(H,36,37)(H,38,39)" 
VA9 InChIKey         InChI                1.06  IHLWXZNPOVMUFQ-UHFFFAOYSA-N                                                                                                                                                                               
VA9 SMILES_CANONICAL CACTVS               3.385 "CC(=O)NCCc1ccc(O)c(c1)c2c(O)c(O)c3C(=O)c4cc(O)c(C(O)=O)c(C(O)=O)c4C(=O)c3c2O"                                                                                                                            
VA9 SMILES           CACTVS               3.385 "CC(=O)NCCc1ccc(O)c(c1)c2c(O)c(O)c3C(=O)c4cc(O)c(C(O)=O)c(C(O)=O)c4C(=O)c3c2O"                                                                                                                            
VA9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)NCCc1ccc(c(c1)c2c(c3c(c(c2O)O)C(=O)c4cc(c(c(c4C3=O)C(=O)O)C(=O)O)O)O)O"                                                                                                                            
VA9 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)NCCc1ccc(c(c1)c2c(c3c(c(c2O)O)C(=O)c4cc(c(c(c4C3=O)C(=O)O)C(=O)O)O)O)O"                                                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           VA9 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "7-[5-(2-acetamidoethyl)-2-oxidanyl-phenyl]-3,5,6,8-tetrakis(oxidanyl)-9,10-bis(oxidanylidene)anthracene-1,2-dicarboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VA9 "Create component" 2023-07-11 PDBJ 
VA9 "Initial release"  2023-08-16 RCSB 
# 
