data_SJ9
# 
_chem_comp.id                                    SJ9 
_chem_comp.name                                  "5-(benzylcarbamoyl)-1-[(4-chloro-3-fluorophenyl)methyl]-1H-indole-2-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H18 Cl F N2 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-07-05 
_chem_comp.pdbx_modified_date                    2023-06-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        436.863 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     SJ9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8DK4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
SJ9 C1  C1  C  0 1 Y N N -20.342 -21.349 13.805 6.581  -0.537 -0.285 C1  SJ9 1  
SJ9 C2  C2  C  0 1 Y N N -19.061 -21.822 14.031 6.651  -1.796 -0.852 C2  SJ9 2  
SJ9 C4  C3  C  0 1 N N N -20.752 -19.998 14.365 5.774  0.546  -0.953 C4  SJ9 3  
SJ9 C5  C4  C  0 1 Y N N -20.848 -23.340 12.558 7.981  -1.270 1.514  C5  SJ9 4  
SJ9 C6  C5  C  0 1 Y N N -19.565 -23.829 12.771 8.060  -2.525 0.941  C6  SJ9 5  
SJ9 C9  C6  C  0 1 N N N -23.041 -19.307 13.541 3.491  1.395  -0.910 C9  SJ9 6  
SJ9 C10 C7  C  0 1 Y N N -23.814 -18.831 12.330 2.104  1.360  -0.404 C10 SJ9 7  
SJ9 C11 C8  C  0 1 Y N N -25.009 -19.461 11.986 1.733  0.406  0.555  C11 SJ9 8  
SJ9 C12 C9  C  0 1 Y N N -23.248 -17.835 11.502 1.171  2.276  -0.875 C12 SJ9 9  
SJ9 C13 C10 C  0 1 Y N N -23.920 -17.437 10.313 -0.139 2.234  -0.389 C13 SJ9 10 
SJ9 C14 C11 C  0 1 Y N N -25.127 -18.035 9.994  -0.498 1.265  0.572  C14 SJ9 11 
SJ9 C15 C12 C  0 1 Y N N -26.679 -21.425 5.959  -4.378 -2.660 -0.207 C15 SJ9 12 
SJ9 C16 C13 C  0 1 Y N N -25.683 -19.049 10.824 0.458  0.361  1.033  C16 SJ9 13 
SJ9 C17 C14 C  0 1 Y N N -23.663 -16.468 9.276  -1.299 3.003  -0.655 C17 SJ9 14 
SJ9 C18 C15 C  0 1 Y N N -24.734 -16.588 8.394  -2.305 2.510  0.116  C18 SJ9 15 
SJ9 C19 C16 C  0 1 N N N -26.828 -17.867 8.243  -2.607 0.660  1.818  C19 SJ9 16 
SJ9 C20 C17 C  0 1 Y N N -26.741 -19.120 7.415  -3.233 -0.510 1.104  C20 SJ9 17 
SJ9 C21 C18 C  0 1 Y N N -25.648 -19.381 6.609  -4.485 -0.383 0.535  C21 SJ9 18 
SJ9 C22 C19 C  0 1 Y N N -27.788 -20.037 7.497  -2.552 -1.711 1.018  C22 SJ9 19 
SJ9 C23 C20 C  0 1 Y N N -25.640 -20.549 5.881  -5.060 -1.457 -0.122 C23 SJ9 20 
SJ9 C24 C21 C  0 1 N N N -24.930 -15.781 7.135  -3.682 3.021  0.147  C24 SJ9 21 
SJ9 C3  C22 C  0 1 Y N N -21.241 -22.110 13.069 7.246  -0.274 0.898  C3  SJ9 22 
SJ9 C7  C23 C  0 1 Y N N -18.679 -23.059 13.512 7.390  -2.790 -0.239 C7  SJ9 23 
SJ9 C8  C24 C  0 1 Y N N -27.773 -21.194 6.776  -3.124 -2.785 0.363  C8  SJ9 24 
SJ9 F   F1  F  0 1 N N N -24.627 -20.840 5.096  -6.285 -1.334 -0.679 F   SJ9 25 
SJ9 N1  N1  N  0 1 N N N -21.585 -19.260 13.421 4.398  0.512  -0.451 N1  SJ9 26 
SJ9 N2  N2  N  0 1 Y N N -25.573 -17.493 8.863  -1.825 1.452  0.865  N2  SJ9 27 
SJ9 O1  O1  O  0 1 N N N -23.609 -19.774 14.504 3.813  2.222  -1.742 O1  SJ9 28 
SJ9 O2  O2  O  0 1 N N N -24.209 -14.605 6.958  -4.595 2.447  0.956  O2  SJ9 29 
SJ9 O3  O3  O  0 1 N N N -25.679 -16.129 6.281  -3.997 3.961  -0.557 O3  SJ9 30 
SJ9 CL  CL1 CL 0 0 N N N -26.629 -22.864 5.005  -5.100 -4.012 -1.023 CL  SJ9 31 
SJ9 H1  H1  H  0 1 N N N -18.360 -21.236 14.607 6.127  -2.003 -1.774 H1  SJ9 32 
SJ9 H2  H2  H  0 1 N N N -19.847 -19.410 14.579 6.217  1.517  -0.733 H2  SJ9 33 
SJ9 H3  H3  H  0 1 N N N -21.317 -20.153 15.296 5.771  0.385  -2.032 H3  SJ9 34 
SJ9 H4  H4  H  0 1 N N N -21.551 -23.926 11.985 8.504  -1.063 2.436  H4  SJ9 35 
SJ9 H5  H5  H  0 1 N N N -19.264 -24.785 12.370 8.634  -3.303 1.422  H5  SJ9 36 
SJ9 H6  H6  H  0 1 N N N -25.410 -20.252 12.602 2.466  -0.299 0.919  H6  SJ9 37 
SJ9 H7  H7  H  0 1 N N N -22.308 -17.377 11.771 1.455  3.014  -1.610 H7  SJ9 38 
SJ9 H8  H8  H  0 1 N N N -26.626 -19.503 10.560 0.185  -0.382 1.768  H8  SJ9 39 
SJ9 H9  H9  H  0 1 N N N -22.822 -15.795 9.200  -1.371 3.830  -1.344 H9  SJ9 40 
SJ9 H10 H10 H  0 1 N N N -27.154 -17.042 7.592  -3.390 1.282  2.251  H10 SJ9 41 
SJ9 H11 H11 H  0 1 N N N -27.574 -18.025 9.036  -1.953 0.295  2.610  H11 SJ9 42 
SJ9 H12 H12 H  0 1 N N N -24.823 -18.687 6.552  -5.016 0.555  0.603  H12 SJ9 43 
SJ9 H13 H13 H  0 1 N N N -28.627 -19.827 8.144  -1.573 -1.809 1.463  H13 SJ9 44 
SJ9 H14 H14 H  0 1 N N N -22.243 -21.746 12.895 7.191  0.709  1.340  H14 SJ9 45 
SJ9 H15 H15 H  0 1 N N N -17.678 -23.424 13.689 7.452  -3.771 -0.686 H15 SJ9 46 
SJ9 H16 H16 H  0 1 N N N -28.584 -21.904 6.840  -2.592 -3.723 0.297  H16 SJ9 47 
SJ9 H17 H17 H  0 1 N N N -21.160 -18.723 12.693 4.141  -0.148 0.212  H17 SJ9 48 
SJ9 H18 H18 H  0 1 N N N -24.433 -14.219 6.120  -5.488 2.818  0.942  H18 SJ9 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
SJ9 CL  C15 SING N N 1  
SJ9 F   C23 SING N N 2  
SJ9 C23 C15 DOUB Y N 3  
SJ9 C23 C21 SING Y N 4  
SJ9 C15 C8  SING Y N 5  
SJ9 O3  C24 DOUB N N 6  
SJ9 C21 C20 DOUB Y N 7  
SJ9 C8  C22 DOUB Y N 8  
SJ9 O2  C24 SING N N 9  
SJ9 C24 C18 SING N N 10 
SJ9 C20 C22 SING Y N 11 
SJ9 C20 C19 SING N N 12 
SJ9 C19 N2  SING N N 13 
SJ9 C18 N2  SING Y N 14 
SJ9 C18 C17 DOUB Y N 15 
SJ9 N2  C14 SING Y N 16 
SJ9 C17 C13 SING Y N 17 
SJ9 C14 C13 DOUB Y N 18 
SJ9 C14 C16 SING Y N 19 
SJ9 C13 C12 SING Y N 20 
SJ9 C16 C11 DOUB Y N 21 
SJ9 C12 C10 DOUB Y N 22 
SJ9 C11 C10 SING Y N 23 
SJ9 C10 C9  SING N N 24 
SJ9 C5  C6  DOUB Y N 25 
SJ9 C5  C3  SING Y N 26 
SJ9 C6  C7  SING Y N 27 
SJ9 C3  C1  DOUB Y N 28 
SJ9 N1  C9  SING N N 29 
SJ9 N1  C4  SING N N 30 
SJ9 C7  C2  DOUB Y N 31 
SJ9 C9  O1  DOUB N N 32 
SJ9 C1  C2  SING Y N 33 
SJ9 C1  C4  SING N N 34 
SJ9 C2  H1  SING N N 35 
SJ9 C4  H2  SING N N 36 
SJ9 C4  H3  SING N N 37 
SJ9 C5  H4  SING N N 38 
SJ9 C6  H5  SING N N 39 
SJ9 C11 H6  SING N N 40 
SJ9 C12 H7  SING N N 41 
SJ9 C16 H8  SING N N 42 
SJ9 C17 H9  SING N N 43 
SJ9 C19 H10 SING N N 44 
SJ9 C19 H11 SING N N 45 
SJ9 C21 H12 SING N N 46 
SJ9 C22 H13 SING N N 47 
SJ9 C3  H14 SING N N 48 
SJ9 C7  H15 SING N N 49 
SJ9 C8  H16 SING N N 50 
SJ9 N1  H17 SING N N 51 
SJ9 O2  H18 SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
SJ9 SMILES           ACDLabs              12.01 "O=C(O)c1cc2cc(ccc2n1Cc1ccc(Cl)c(F)c1)C(=O)NCc1ccccc1"                                                                                                      
SJ9 InChI            InChI                1.06  "InChI=1S/C24H18ClFN2O3/c25-19-8-6-16(10-20(19)26)14-28-21-9-7-17(11-18(21)12-22(28)24(30)31)23(29)27-13-15-4-2-1-3-5-15/h1-12H,13-14H2,(H,27,29)(H,30,31)" 
SJ9 InChIKey         InChI                1.06  QNQATVBNODOSPT-UHFFFAOYSA-N                                                                                                                                 
SJ9 SMILES_CANONICAL CACTVS               3.385 "OC(=O)c1cc2cc(ccc2n1Cc3ccc(Cl)c(F)c3)C(=O)NCc4ccccc4"                                                                                                      
SJ9 SMILES           CACTVS               3.385 "OC(=O)c1cc2cc(ccc2n1Cc3ccc(Cl)c(F)c3)C(=O)NCc4ccccc4"                                                                                                      
SJ9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNC(=O)c2ccc3c(c2)cc(n3Cc4ccc(c(c4)F)Cl)C(=O)O"                                                                                                  
SJ9 SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNC(=O)c2ccc3c(c2)cc(n3Cc4ccc(c(c4)F)Cl)C(=O)O"                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
SJ9 "SYSTEMATIC NAME" ACDLabs              12.01 "5-(benzylcarbamoyl)-1-[(4-chloro-3-fluorophenyl)methyl]-1H-indole-2-carboxylic acid"            
SJ9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[(4-chloranyl-3-fluoranyl-phenyl)methyl]-5-[(phenylmethyl)carbamoyl]indole-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
SJ9 "Create component" 2022-07-05 RCSB 
SJ9 "Initial release"  2023-07-05 RCSB 
# 
