data_SE9
# 
_chem_comp.id                                    SE9 
_chem_comp.name                                  "(2P)-5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-6-oxo-2-[3-(trifluoromethyl)phenyl]-1,6-dihydropyrimidine-4-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H17 F3 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-06-30 
_chem_comp.pdbx_modified_date                    2022-09-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        434.369 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     SE9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8DIP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
SE9 C11 C1  C 0 1 N N N 4.656  30.403 16.754 -1.020 -2.375 0.036  C11 SE9 1  
SE9 C12 C2  C 0 1 N N N 4.882  29.405 17.839 -1.635 -3.617 -0.033 C12 SE9 2  
SE9 C01 C3  C 0 1 N N N 5.725  31.698 9.862  8.778  0.904  -1.423 C01 SE9 3  
SE9 C03 C4  C 0 1 Y N N 4.328  32.980 11.249 6.584  0.756  -0.524 C03 SE9 4  
SE9 C04 C5  C 0 1 Y N N 3.284  32.879 12.157 5.204  0.666  -0.662 C04 SE9 5  
SE9 C05 C6  C 0 1 Y N N 3.178  33.776 13.206 4.418  0.595  0.475  C05 SE9 6  
SE9 C06 C7  C 0 1 N N N 2.035  33.678 14.216 2.918  0.497  0.369  C06 SE9 7  
SE9 C07 C8  C 0 1 N N N 1.877  32.246 14.731 2.506  -0.975 0.309  C07 SE9 8  
SE9 C09 C9  C 0 1 N N N 3.259  30.734 16.239 0.454  -2.279 0.140  C09 SE9 9  
SE9 C14 C10 C 0 1 N N N 6.274  29.127 18.302 -3.098 -3.655 -0.135 C14 SE9 10 
SE9 C17 C11 C 0 1 N N N 7.164  30.809 16.622 -3.075 -1.303 -0.084 C17 SE9 11 
SE9 C19 C12 C 0 1 Y N N 8.332  31.551 15.983 -3.829 -0.032 -0.110 C19 SE9 12 
SE9 C20 C13 C 0 1 Y N N 9.404  30.854 15.447 -5.221 -0.045 -0.208 C20 SE9 13 
SE9 C21 C14 C 0 1 Y N N 10.453 31.548 14.869 -5.918 1.145  -0.231 C21 SE9 14 
SE9 C22 C15 C 0 1 Y N N 10.428 32.934 14.823 -5.241 2.349  -0.158 C22 SE9 15 
SE9 C23 C16 C 0 1 Y N N 9.353  33.626 15.357 -3.861 2.369  -0.062 C23 SE9 16 
SE9 C24 C17 C 0 1 Y N N 8.305  32.933 15.936 -3.151 1.186  -0.032 C24 SE9 17 
SE9 C25 C18 C 0 1 N N N 9.310  35.152 15.314 -3.131 3.685  0.017  C25 SE9 18 
SE9 C29 C19 C 0 1 Y N N 4.156  34.759 13.299 5.042  0.616  1.714  C29 SE9 19 
SE9 C30 C20 C 0 1 Y N N 5.176  34.808 12.360 6.418  0.706  1.776  C30 SE9 20 
SE9 F26 F1  F 0 1 N N N 10.559 35.641 15.055 -2.251 3.796  -1.065 F26 SE9 21 
SE9 F27 F2  F 0 1 N N N 8.876  35.623 16.520 -4.056 4.734  -0.025 F27 SE9 22 
SE9 F28 F3  F 0 1 N N N 8.447  35.554 14.335 -2.409 3.747  1.214  F28 SE9 23 
SE9 N08 N1  N 0 1 N N N 3.143  31.826 15.294 1.047  -1.070 0.206  N08 SE9 24 
SE9 N16 N2  N 0 1 N N N 7.400  29.821 17.704 -3.764 -2.479 -0.157 N16 SE9 25 
SE9 N18 N3  N 0 1 N N N 5.784  31.093 16.161 -1.768 -1.262 0.001  N18 SE9 26 
SE9 N31 N4  N 0 1 Y N N 5.239  33.932 11.372 7.142  0.773  0.675  N31 SE9 27 
SE9 O02 O1  O 0 1 N N N 4.416  32.065 10.194 7.366  0.820  -1.631 O02 SE9 28 
SE9 O10 O2  O 0 1 N N N 2.306  30.122 16.590 1.129  -3.289 0.165  O10 SE9 29 
SE9 O13 O3  O 0 1 N N N 3.798  28.735 18.418 -0.906 -4.761 -0.007 O13 SE9 30 
SE9 O15 O4  O 0 1 N N N 6.473  28.337 19.159 -3.695 -4.715 -0.199 O15 SE9 31 
SE9 H1  H1  H 0 1 N N N 5.705  30.981 9.028  9.007  1.802  -0.849 H1  SE9 32 
SE9 H2  H2  H 0 1 N N N 6.292  32.592 9.563  9.117  0.026  -0.875 H2  SE9 33 
SE9 H3  H3  H 0 1 N N N 6.208  31.233 10.734 9.285  0.950  -2.387 H3  SE9 34 
SE9 H4  H4  H 0 1 N N N 2.549  32.095 12.045 4.752  0.653  -1.642 H4  SE9 35 
SE9 H5  H5  H 0 1 N N N 2.248  34.344 15.065 2.460  0.968  1.239  H5  SE9 36 
SE9 H6  H6  H 0 1 N N N 1.099  33.991 13.731 2.583  1.005  -0.536 H6  SE9 37 
SE9 H7  H7  H 0 1 N N N 1.096  32.213 15.505 2.963  -1.445 -0.561 H7  SE9 38 
SE9 H8  H8  H 0 1 N N N 1.599  31.580 13.901 2.840  -1.483 1.214  H8  SE9 39 
SE9 H9  H9  H 0 1 N N N 9.421  29.775 15.480 -5.751 -0.984 -0.265 H9  SE9 40 
SE9 H10 H10 H 0 1 N N N 11.292 31.010 14.453 -6.996 1.137  -0.306 H10 SE9 41 
SE9 H11 H11 H 0 1 N N N 11.247 33.474 14.371 -5.792 3.278  -0.177 H11 SE9 42 
SE9 H12 H12 H 0 1 N N N 7.466  33.471 16.351 -2.074 1.203  0.043  H12 SE9 43 
SE9 H13 H13 H 0 1 N N N 4.122  35.483 14.100 4.457  0.563  2.621  H13 SE9 44 
SE9 H14 H14 H 0 1 N N N 5.932  35.575 12.438 6.909  0.723  2.738  H14 SE9 45 
SE9 H15 H15 H 0 1 N N N 3.973  32.311 15.019 0.509  -0.264 0.186  H15 SE9 46 
SE9 H16 H16 H 0 1 N N N 8.330  29.634 18.020 -4.732 -2.471 -0.219 H16 SE9 47 
SE9 H17 H17 H 0 1 N N N 2.995  28.998 17.984 -1.437 -5.567 -0.061 H17 SE9 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
SE9 C01 O02 SING N N 1  
SE9 O02 C03 SING N N 2  
SE9 C03 N31 DOUB Y N 3  
SE9 C03 C04 SING Y N 4  
SE9 N31 C30 SING Y N 5  
SE9 C04 C05 DOUB Y N 6  
SE9 C30 C29 DOUB Y N 7  
SE9 C05 C29 SING Y N 8  
SE9 C05 C06 SING N N 9  
SE9 C06 C07 SING N N 10 
SE9 F28 C25 SING N N 11 
SE9 C07 N08 SING N N 12 
SE9 C22 C21 DOUB Y N 13 
SE9 C22 C23 SING Y N 14 
SE9 C21 C20 SING Y N 15 
SE9 F26 C25 SING N N 16 
SE9 N08 C09 SING N N 17 
SE9 C25 C23 SING N N 18 
SE9 C25 F27 SING N N 19 
SE9 C23 C24 DOUB Y N 20 
SE9 C20 C19 DOUB Y N 21 
SE9 C24 C19 SING Y N 22 
SE9 C19 C17 SING N N 23 
SE9 N18 C17 DOUB N N 24 
SE9 N18 C11 SING N N 25 
SE9 C09 O10 DOUB N N 26 
SE9 C09 C11 SING N N 27 
SE9 C17 N16 SING N N 28 
SE9 C11 C12 DOUB N N 29 
SE9 N16 C14 SING N N 30 
SE9 C12 C14 SING N N 31 
SE9 C12 O13 SING N N 32 
SE9 C14 O15 DOUB N N 33 
SE9 C01 H1  SING N N 34 
SE9 C01 H2  SING N N 35 
SE9 C01 H3  SING N N 36 
SE9 C04 H4  SING N N 37 
SE9 C06 H5  SING N N 38 
SE9 C06 H6  SING N N 39 
SE9 C07 H7  SING N N 40 
SE9 C07 H8  SING N N 41 
SE9 C20 H9  SING N N 42 
SE9 C21 H10 SING N N 43 
SE9 C22 H11 SING N N 44 
SE9 C24 H12 SING N N 45 
SE9 C29 H13 SING N N 46 
SE9 C30 H14 SING N N 47 
SE9 N08 H15 SING N N 48 
SE9 N16 H16 SING N N 49 
SE9 O13 H17 SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
SE9 SMILES           ACDLabs              12.01 "OC1=C(N=C(NC1=O)c1cccc(c1)C(F)(F)F)C(=O)NCCc1ccnc(OC)c1"                                                                                                             
SE9 InChI            InChI                1.06  "InChI=1S/C20H17F3N4O4/c1-31-14-9-11(5-7-24-14)6-8-25-18(29)15-16(28)19(30)27-17(26-15)12-3-2-4-13(10-12)20(21,22)23/h2-5,7,9-10,28H,6,8H2,1H3,(H,25,29)(H,26,27,30)" 
SE9 InChIKey         InChI                1.06  CJUKCSPPUSTPJP-UHFFFAOYSA-N                                                                                                                                           
SE9 SMILES_CANONICAL CACTVS               3.385 "COc1cc(CCNC(=O)C2=C(O)C(=O)NC(=N2)c3cccc(c3)C(F)(F)F)ccn1"                                                                                                           
SE9 SMILES           CACTVS               3.385 "COc1cc(CCNC(=O)C2=C(O)C(=O)NC(=N2)c3cccc(c3)C(F)(F)F)ccn1"                                                                                                           
SE9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1cc(ccn1)CCNC(=O)C2=C(C(=O)NC(=N2)c3cccc(c3)C(F)(F)F)O"                                                                                                           
SE9 SMILES           "OpenEye OEToolkits" 2.0.7 "COc1cc(ccn1)CCNC(=O)C2=C(C(=O)NC(=N2)c3cccc(c3)C(F)(F)F)O"                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
SE9 "SYSTEMATIC NAME" ACDLabs              12.01 "(2P)-5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-6-oxo-2-[3-(trifluoromethyl)phenyl]-1,6-dihydropyrimidine-4-carboxamide"     
SE9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[2-(2-methoxypyridin-4-yl)ethyl]-5-oxidanyl-6-oxidanylidene-2-[3-(trifluoromethyl)phenyl]-1~{H}-pyrimidine-4-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
SE9 "Create component" 2022-06-30 RCSB 
SE9 "Initial release"  2022-09-14 RCSB 
# 
