data_RR9
# 
_chem_comp.id                                    RR9 
_chem_comp.name                                  "6-[[[2-[[(2~{R})-1-oxidanylbutan-2-yl]amino]-9-propan-2-yl-purin-6-yl]amino]methyl]-3-pyridin-2-yl-1~{H}-pyridin-2-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H28 N8 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-12-06 
_chem_comp.pdbx_modified_date                    2023-09-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        448.521 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     RR9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8BUH 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
RR9 C1  C1  C 0 1 N N N -60.697 24.527 -11.232 -5.722 -4.036 1.209  C1  RR9 1  
RR9 N1  N1  N 0 1 Y N N -61.791 24.826 -9.046  -4.083 -2.773 -0.094 N1  RR9 2  
RR9 O1  O1  O 0 1 N N N -66.635 23.148 -1.082  4.438  -0.698 1.878  O1  RR9 3  
RR9 C2  C2  C 0 1 N N N -60.940 25.471 -10.068 -5.475 -3.227 -0.066 C2  RR9 4  
RR9 N2  N2  N 0 1 Y N N -63.601 23.936 -8.043  -1.901 -2.832 -0.126 N2  RR9 5  
RR9 O2  O2  O 0 1 N N N -56.864 22.858 -3.755  -5.438 4.660  -0.017 O2  RR9 6  
RR9 C3  C3  C 0 1 N N N -61.558 26.780 -10.501 -5.750 -4.106 -1.288 C3  RR9 7  
RR9 C4  C4  C 0 1 Y N N -63.124 24.521 -9.118  -2.974 -3.567 -0.090 C4  RR9 8  
RR9 C5  C5  C 0 1 Y N N -61.373 24.364 -7.825  -3.655 -1.470 -0.135 C5  RR9 9  
RR9 C7  C6  C 0 1 Y N N -62.286 23.283 -5.935  -1.539 -0.312 -0.189 C7  RR9 10 
RR9 C9  C7  C 0 1 N N N -63.612 22.886 -2.828  2.054  0.697  -0.208 C9  RR9 11 
RR9 C10 C8  C 0 1 N N N -62.835 23.811 -2.221  2.796  1.051  -1.286 C10 RR9 12 
RR9 C11 C9  C 0 1 N N N -63.339 24.571 -1.158  4.172  0.802  -1.302 C11 RR9 13 
RR9 C12 C10 C 0 1 N N N -64.646 24.397 -0.724  4.758  0.192  -0.203 C12 RR9 14 
RR9 C14 C11 C 0 1 Y N N -64.397 25.719 1.410   6.978  0.157  -1.325 C14 RR9 15 
RR9 C15 C12 C 0 1 Y N N -64.970 26.480 2.406   8.335  -0.108 -1.292 C15 RR9 16 
RR9 C16 C13 C 0 1 Y N N -66.318 26.735 2.361   8.883  -0.617 -0.122 C16 RR9 17 
RR9 C17 C14 C 0 1 Y N N -67.046 26.220 1.315   8.065  -0.841 0.969  C17 RR9 18 
RR9 C18 C15 C 0 1 N N N -65.466 23.402 -1.380  3.944  -0.160 0.901  C18 RR9 19 
RR9 C21 C16 C 0 1 N N N -57.997 23.538 -3.212  -4.307 4.405  -0.852 C21 RR9 20 
RR9 C22 C17 C 0 1 N N N -57.628 25.729 -4.426  -3.080 3.685  1.201  C22 RR9 21 
RR9 C23 C18 C 0 1 N N N -58.173 26.816 -5.325  -2.125 2.639  1.780  C23 RR9 22 
RR9 C13 C19 C 0 1 Y N N -65.195 25.210 0.393   6.212  -0.088 -0.185 C13 RR9 23 
RR9 C19 C20 C 0 1 Y N N -60.035 23.893 -6.089  -3.549 0.831  -0.200 C19 RR9 24 
RR9 C20 C21 C 0 1 N N R -58.571 24.536 -4.219  -3.454 3.297  -0.230 C20 RR9 25 
RR9 C6  C22 C 0 1 Y N N -62.492 23.831 -7.215  -2.251 -1.523 -0.149 C6  RR9 26 
RR9 C8  C23 C 0 1 N N N -63.082 22.059 -3.972  0.572  0.966  -0.209 C8  RR9 27 
RR9 N3  N3  N 0 1 N N N -63.285 22.718 -5.242  -0.155 -0.306 -0.191 N3  RR9 28 
RR9 N4  N4  N 0 1 N N N -64.895 22.697 -2.411  2.623  0.100  0.869  N4  RR9 29 
RR9 N5  N5  N 0 1 Y N N -66.515 25.475 0.334   6.774  -0.580 0.912  N5  RR9 30 
RR9 N6  N6  N 0 1 Y N N -61.051 23.337 -5.394  -2.223 0.827  -0.202 N6  RR9 31 
RR9 N7  N7  N 0 1 N N N -58.822 23.906 -5.514  -4.215 2.045  -0.214 N7  RR9 32 
RR9 N8  N8  N 0 1 Y N N -60.135 24.432 -7.318  -4.259 -0.286 -0.161 N8  RR9 33 
RR9 H2  H1  H 0 1 N N N -60.248 23.594 -10.861 -5.527 -3.410 2.080  H2  RR9 34 
RR9 H3  H2  H 0 1 N N N -61.653 24.302 -11.727 -6.758 -4.374 1.230  H3  RR9 35 
RR9 H1  H3  H 0 1 N N N -60.014 25.001 -11.952 -5.057 -4.900 1.226  H1  RR9 36 
RR9 H4  H4  H 0 1 N N N -59.965 25.695 -9.611  -6.140 -2.364 -0.083 H4  RR9 37 
RR9 H23 H5  H 0 1 N N N -56.525 22.245 -3.114  -6.025 5.353  -0.351 H23 RR9 38 
RR9 H6  H6  H 0 1 N N N -61.711 27.422 -9.621  -5.085 -4.970 -1.271 H6  RR9 39 
RR9 H7  H7  H 0 1 N N N -60.887 27.285 -11.211 -6.786 -4.444 -1.268 H7  RR9 40 
RR9 H5  H8  H 0 1 N N N -62.526 26.586 -10.986 -5.574 -3.530 -2.197 H5  RR9 41 
RR9 H8  H9  H 0 1 N N N -63.731 24.742 -9.984  -2.985 -4.647 -0.061 H8  RR9 42 
RR9 H13 H10 H 0 1 N N N -61.820 23.965 -2.558  2.323  1.525  -2.133 H13 RR9 43 
RR9 H14 H11 H 0 1 N N N -62.706 25.298 -0.672  4.768  1.080  -2.158 H14 RR9 44 
RR9 H15 H12 H 0 1 N N N -63.336 25.520 1.420   6.519  0.554  -2.219 H15 RR9 45 
RR9 H16 H13 H 0 1 N N N -64.366 26.871 3.212   8.955  0.075  -2.158 H16 RR9 46 
RR9 H17 H14 H 0 1 N N N -66.795 27.326 3.129   9.939  -0.835 -0.065 H17 RR9 47 
RR9 H18 H15 H 0 1 N N N -68.105 26.427 1.281   8.489  -1.237 1.880  H18 RR9 48 
RR9 H21 H16 H 0 1 N N N -57.691 24.079 -2.304  -4.648 4.090  -1.839 H21 RR9 49 
RR9 H22 H17 H 0 1 N N N -58.771 22.800 -2.956  -3.712 5.313  -0.946 H22 RR9 50 
RR9 H25 H18 H 0 1 N N N -56.693 25.354 -4.869  -3.981 3.733  1.812  H25 RR9 51 
RR9 H24 H19 H 0 1 N N N -57.415 26.173 -3.442  -2.592 4.660  1.198  H24 RR9 52 
RR9 H27 H20 H 0 1 N N N -57.432 27.625 -5.414  -2.613 1.665  1.784  H27 RR9 53 
RR9 H28 H21 H 0 1 N N N -58.381 26.398 -6.321  -1.224 2.592  1.169  H28 RR9 54 
RR9 H26 H22 H 0 1 N N N -59.103 27.216 -4.894  -1.859 2.916  2.800  H26 RR9 55 
RR9 H20 H23 H 0 1 N N N -59.521 24.919 -3.817  -2.547 3.163  -0.820 H20 RR9 56 
RR9 H10 H24 H 0 1 N N N -63.604 21.091 -3.985  0.307  1.547  0.675  H10 RR9 57 
RR9 H11 H25 H 0 1 N N N -62.005 21.893 -3.824  0.304  1.525  -1.105 H11 RR9 58 
RR9 H9  H26 H 0 1 N N N -63.950 23.446 -5.073  0.333  -1.144 -0.182 H9  RR9 59 
RR9 H12 H27 H 0 1 N N N -65.450 22.009 -2.880  2.070  -0.143 1.628  H12 RR9 60 
RR9 H19 H28 H 0 1 N N N -58.553 22.948 -5.413  -5.185 2.067  -0.213 H19 RR9 61 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
RR9 C1  C2  SING N N 1  
RR9 C3  C2  SING N N 2  
RR9 C2  N1  SING N N 3  
RR9 C4  N1  SING Y N 4  
RR9 C4  N2  DOUB Y N 5  
RR9 N1  C5  SING Y N 6  
RR9 N2  C6  SING Y N 7  
RR9 C5  N8  DOUB Y N 8  
RR9 C5  C6  SING Y N 9  
RR9 N8  C19 SING Y N 10 
RR9 C6  C7  DOUB Y N 11 
RR9 C19 N7  SING N N 12 
RR9 C19 N6  DOUB Y N 13 
RR9 C7  N6  SING Y N 14 
RR9 C7  N3  SING N N 15 
RR9 N7  C20 SING N N 16 
RR9 C23 C22 SING N N 17 
RR9 N3  C8  SING N N 18 
RR9 C22 C20 SING N N 19 
RR9 C20 C21 SING N N 20 
RR9 C8  C9  SING N N 21 
RR9 O2  C21 SING N N 22 
RR9 C9  N4  SING N N 23 
RR9 C9  C10 DOUB N N 24 
RR9 N4  C18 SING N N 25 
RR9 C10 C11 SING N N 26 
RR9 C18 O1  DOUB N N 27 
RR9 C18 C12 SING N N 28 
RR9 C11 C12 DOUB N N 29 
RR9 C12 C13 SING N N 30 
RR9 N5  C13 DOUB Y N 31 
RR9 N5  C17 SING Y N 32 
RR9 C13 C14 SING Y N 33 
RR9 C17 C16 DOUB Y N 34 
RR9 C14 C15 DOUB Y N 35 
RR9 C16 C15 SING Y N 36 
RR9 C1  H2  SING N N 37 
RR9 C1  H3  SING N N 38 
RR9 C1  H1  SING N N 39 
RR9 C2  H4  SING N N 40 
RR9 O2  H23 SING N N 41 
RR9 C3  H6  SING N N 42 
RR9 C3  H7  SING N N 43 
RR9 C3  H5  SING N N 44 
RR9 C4  H8  SING N N 45 
RR9 C10 H13 SING N N 46 
RR9 C11 H14 SING N N 47 
RR9 C14 H15 SING N N 48 
RR9 C15 H16 SING N N 49 
RR9 C16 H17 SING N N 50 
RR9 C17 H18 SING N N 51 
RR9 C21 H21 SING N N 52 
RR9 C21 H22 SING N N 53 
RR9 C22 H25 SING N N 54 
RR9 C22 H24 SING N N 55 
RR9 C23 H27 SING N N 56 
RR9 C23 H28 SING N N 57 
RR9 C23 H26 SING N N 58 
RR9 C20 H20 SING N N 59 
RR9 C8  H10 SING N N 60 
RR9 C8  H11 SING N N 61 
RR9 N3  H9  SING N N 62 
RR9 N4  H12 SING N N 63 
RR9 N7  H19 SING N N 64 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
RR9 InChI            InChI                1.06    "InChI=1S/C23H28N8O2/c1-4-15(12-32)28-23-29-20(19-21(30-23)31(13-26-19)14(2)3)25-11-16-8-9-17(22(33)27-16)18-7-5-6-10-24-18/h5-10,13-15,32H,4,11-12H2,1-3H3,(H,27,33)(H2,25,28,29,30)/t15-/m1/s1" 
RR9 InChIKey         InChI                1.06    ZZMGLCCXIBNSGN-OAHLLOKOSA-N                                                                                                                                                                       
RR9 SMILES_CANONICAL CACTVS               3.385   "CC[C@H](CO)Nc1nc(NCC2=CC=C(C(=O)N2)c3ccccn3)c4ncn(C(C)C)c4n1"                                                                                                                                    
RR9 SMILES           CACTVS               3.385   "CC[CH](CO)Nc1nc(NCC2=CC=C(C(=O)N2)c3ccccn3)c4ncn(C(C)C)c4n1"                                                                                                                                     
RR9 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC[C@H](CO)Nc1nc(c2c(n1)n(cn2)C(C)C)NCC3=CC=C(C(=O)N3)c4ccccn4"                                                                                                                                  
RR9 SMILES           "OpenEye OEToolkits" 3.1.0.0 "CCC(CO)Nc1nc(c2c(n1)n(cn2)C(C)C)NCC3=CC=C(C(=O)N3)c4ccccn4"                                                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           RR9 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "6-[[[2-[[(2~{R})-1-oxidanylbutan-2-yl]amino]-9-propan-2-yl-purin-6-yl]amino]methyl]-3-pyridin-2-yl-1~{H}-pyridin-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
RR9 "Create component"   2022-12-06 PDBE 
RR9 "Other modification" 2023-09-08 PDBE 
RR9 "Initial release"    2023-09-13 RCSB 
# 
