data_PT9
#

_chem_comp.id                                   PT9
_chem_comp.name                                 "[Pt(H2bapbpy)] platinum"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H16 N6 Pt"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-11-28
_chem_comp.pdbx_modified_date                   2019-05-24
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       535.459
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    PT9
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  Y
_chem_comp.pdbx_model_coordinates_db_code       6F3C
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PT9  C2   C1   C   0  1  Y  N  N   -8.222   2.119  14.364  ?  ?  ?  C2   PT9   1  
PT9  N3   N1   N   0  1  Y  N  N   -6.582  -0.001  10.078  ?  ?  ?  N3   PT9   2  
PT9  N4   N2   N   0  1  Y  N  N   -4.396  -1.244  10.892  ?  ?  ?  N4   PT9   3  
PT9  C5   C2   C   0  1  Y  N  N   -8.321   1.419  11.749  ?  ?  ?  C5   PT9   4  
PT9  C6   C3   C   0  1  Y  N  N   -7.690   0.637   9.733  ?  ?  ?  C6   PT9   5  
PT9  C7   C4   C   0  1  Y  N  N   -8.047   0.863   8.390  ?  ?  ?  C7   PT9   6  
PT9  C8   C5   C   0  1  Y  N  N   -7.225   0.407   7.444  ?  ?  ?  C8   PT9   7  
PT9  C9   C6   C   0  1  Y  N  N   -6.054  -0.250   7.809  ?  ?  ?  C9   PT9   8  
PT9  PT1  PT1  PT  0  0  N  N  N   -5.871  -0.429  11.858  ?  ?  ?  PT1  PT9   9  
PT9  C1   C7   C   0  1  Y  N  N   -7.318   1.257  13.848  ?  ?  ?  C1   PT9  10  
PT9  C3   C8   C   0  1  Y  N  N   -9.206   2.652  13.521  ?  ?  ?  C3   PT9  11  
PT9  C4   C9   C   0  1  Y  N  N   -9.275   2.327  12.226  ?  ?  ?  C4   PT9  12  
PT9  C10  C10  C   0  1  Y  N  N   -5.750  -0.447   9.106  ?  ?  ?  C10  PT9  13  
PT9  C11  C11  C   0  1  Y  N  N   -4.551  -1.127   9.540  ?  ?  ?  C11  PT9  14  
PT9  C12  C12  C   0  1  Y  N  N   -3.615  -1.622   8.634  ?  ?  ?  C12  PT9  15  
PT9  C13  C13  C   0  1  Y  N  N   -2.505  -2.258   9.181  ?  ?  ?  C13  PT9  16  
PT9  C14  C14  C   0  1  Y  N  N   -2.391  -2.381  10.511  ?  ?  ?  C14  PT9  17  
PT9  C15  C15  C   0  1  Y  N  N   -3.351  -1.867  11.370  ?  ?  ?  C15  PT9  18  
PT9  C16  C16  C   0  1  Y  N  N   -3.943  -1.788  13.728  ?  ?  ?  C16  PT9  19  
PT9  C17  C17  C   0  1  Y  N  N   -3.447  -2.271  14.940  ?  ?  ?  C17  PT9  20  
PT9  C18  C18  C   0  1  Y  N  N   -4.160  -2.070  16.062  ?  ?  ?  C18  PT9  21  
PT9  C19  C19  C   0  1  Y  N  N   -5.367  -1.405  15.962  ?  ?  ?  C19  PT9  22  
PT9  C20  C20  C   0  1  Y  N  N   -5.800  -0.968  14.760  ?  ?  ?  C20  PT9  23  
PT9  N1   N3   N   0  1  Y  N  N   -7.300   0.849  12.549  ?  ?  ?  N1   PT9  24  
PT9  N2   N4   N   0  1  N  N  N   -8.582   1.172  10.470  ?  ?  ?  N2   PT9  25  
PT9  N5   N5   N   0  1  N  N  N   -3.129  -2.038  12.677  ?  ?  ?  N5   PT9  26  
PT9  N6   N6   N   0  1  Y  N  N   -5.080  -1.154  13.604  ?  ?  ?  N6   PT9  27  
PT9  H1   H1   H   0  1  N  N  N   -8.187   2.392  15.408  ?  ?  ?  H1   PT9  28  
PT9  H2   H2   H   0  1  N  N  N   -8.956   1.388   8.135  ?  ?  ?  H2   PT9  29  
PT9  H3   H3   H   0  1  N  N  N   -7.467   0.547   6.401  ?  ?  ?  H3   PT9  30  
PT9  H4   H4   H   0  1  N  N  N   -5.381  -0.606   7.043  ?  ?  ?  H4   PT9  31  
PT9  H5   H5   H   0  1  N  N  N   -6.560   0.866  14.510  ?  ?  ?  H5   PT9  32  
PT9  H6   H6   H   0  1  N  N  N   -9.928   3.344  13.928  ?  ?  ?  H6   PT9  33  
PT9  H7   H7   H   0  1  N  N  N  -10.031   2.745  11.578  ?  ?  ?  H7   PT9  34  
PT9  H8   H8   H   0  1  N  N  N   -3.744  -1.518   7.567  ?  ?  ?  H8   PT9  35  
PT9  H9   H9   H   0  1  N  N  N   -1.735  -2.653   8.534  ?  ?  ?  H9   PT9  36  
PT9  H10  H10  H   0  1  N  N  N   -1.533  -2.891  10.923  ?  ?  ?  H10  PT9  37  
PT9  H11  H11  H   0  1  N  N  N   -2.505  -2.798  14.976  ?  ?  ?  H11  PT9  38  
PT9  H12  H12  H   0  1  N  N  N   -3.798  -2.420  17.018  ?  ?  ?  H12  PT9  39  
PT9  H13  H13  H   0  1  N  N  N   -5.964  -1.235  16.846  ?  ?  ?  H13  PT9  40  
PT9  H14  H14  H   0  1  N  N  N   -6.748  -0.453  14.705  ?  ?  ?  H14  PT9  41  
PT9  H15  H15  H   0  1  N  N  N   -2.229  -2.405  12.912  ?  ?  ?  H15  PT9  42  
PT9  H16  H16  H   0  1  N  N  N   -9.476   1.405  10.087  ?  ?  ?  H16  PT9  43  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PT9  C8   C9   DOUB  Y  N   1  
PT9  C8   C7   SING  Y  N   2  
PT9  C9   C10  SING  Y  N   3  
PT9  C7   C6   DOUB  Y  N   4  
PT9  C12  C13  DOUB  Y  N   5  
PT9  C12  C11  SING  Y  N   6  
PT9  C10  C11  SING  N  N   7  
PT9  C10  N3   DOUB  Y  N   8  
PT9  C13  C14  SING  Y  N   9  
PT9  C11  N4   DOUB  Y  N  10  
PT9  C6   N3   SING  Y  N  11  
PT9  C6   N2   SING  N  N  12  
PT9  N3   PT1  SING  N  N  13  
PT9  N2   C5   SING  N  N  14  
PT9  C14  C15  DOUB  Y  N  15  
PT9  N4   C15  SING  Y  N  16  
PT9  N4   PT1  SING  N  N  17  
PT9  C15  N5   SING  N  N  18  
PT9  C5   C4   SING  Y  N  19  
PT9  C5   N1   DOUB  Y  N  20  
PT9  PT1  N1   SING  N  N  21  
PT9  PT1  N6   SING  N  N  22  
PT9  C4   C3   DOUB  Y  N  23  
PT9  N1   C1   SING  Y  N  24  
PT9  N5   C16  SING  N  N  25  
PT9  C3   C2   SING  Y  N  26  
PT9  N6   C16  DOUB  Y  N  27  
PT9  N6   C20  SING  Y  N  28  
PT9  C16  C17  SING  Y  N  29  
PT9  C1   C2   DOUB  Y  N  30  
PT9  C20  C19  DOUB  Y  N  31  
PT9  C17  C18  DOUB  Y  N  32  
PT9  C19  C18  SING  Y  N  33  
PT9  C2   H1   SING  N  N  34  
PT9  C7   H2   SING  N  N  35  
PT9  C8   H3   SING  N  N  36  
PT9  C9   H4   SING  N  N  37  
PT9  C1   H5   SING  N  N  38  
PT9  C3   H6   SING  N  N  39  
PT9  C4   H7   SING  N  N  40  
PT9  C12  H8   SING  N  N  41  
PT9  C13  H9   SING  N  N  42  
PT9  C14  H10  SING  N  N  43  
PT9  C17  H11  SING  N  N  44  
PT9  C18  H12  SING  N  N  45  
PT9  C19  H13  SING  N  N  46  
PT9  C20  H14  SING  N  N  47  
PT9  N5   H15  SING  N  N  48  
PT9  N2   H16  SING  N  N  49  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PT9  InChI             InChI                 1.03   "InChI=1S/C20H16N6.Pt/c1-3-13-21-17(9-1)25-19-11-5-7-15(23-19)16-8-6-12-20(24-16)26-18-10-2-4-14-22-18;/h1-14H,(H,21,23,25)(H,22,24,26);"  
PT9  InChIKey          InChI                 1.03   ZLWQJMSFYZEZJF-UHFFFAOYSA-N  
PT9  SMILES_CANONICAL  CACTVS                3.385  "[Pt].N(c1ccccn1)c2cccc(n2)c3cccc(Nc4ccccn4)n3"  
PT9  SMILES            CACTVS                3.385  "[Pt].N(c1ccccn1)c2cccc(n2)c3cccc(Nc4ccccn4)n3"  
PT9  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C1=CC2=[N](C=C1)[Pt]34[N]5=C(C=CC=C5)NC6=CC=CC(=[N]63)C7=[N]4C(=CC=C7)N2"  
PT9  SMILES            "OpenEye OEToolkits"  2.0.6  "C1=CC2=[N](C=C1)[Pt]34[N]5=C(C=CC=C5)NC6=CC=CC(=[N]63)C7=[N]4C(=CC=C7)N2"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PT9  "Create component"  2017-11-28  EBI   
PT9  "Initial release"   2019-05-29  RCSB  
##
