data_O39
# 
_chem_comp.id                                    O39 
_chem_comp.name                                  "(N-[([2,2'-bipyridin]-5-yl-kappa~2~N~1~,N~1'~)methyl]-3-{[(pyridin-3-yl)methyl]sulfanyl}propanamide)bis[2-(quinolin-2-yl-kappaN)phenyl-kappaC~1~]iridium" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C50 H40 Ir N6 O S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-04-20 
_chem_comp.pdbx_modified_date                    2022-08-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        965.174 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     O39 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   Y 
_chem_comp.pdbx_model_coordinates_db_code        7UAY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
O39 C13  C1  C  0 1 Y N N -25.568 -13.166 -12.223 ? ? ? C13  O39 1  
O39 C15  C2  C  0 1 Y N N -28.594 -13.977 -9.948  ? ? ? C15  O39 2  
O39 C16  C3  C  0 1 Y N N -29.557 -12.416 -7.708  ? ? ? C16  O39 3  
O39 C17  C4  C  0 1 Y N N -28.092 -14.072 -8.634  ? ? ? C17  O39 4  
O39 C18  C5  C  0 1 Y N N -29.548 -13.059 -10.061 ? ? ? C18  O39 5  
O39 C01  C6  C  0 1 Y N N -29.064 -17.001 -12.950 ? ? ? C01  O39 6  
O39 C02  C7  C  0 1 Y N N -27.505 -16.366 -15.210 ? ? ? C02  O39 7  
O39 C03  C8  C  0 1 Y N N -28.154 -15.957 -12.955 ? ? ? C03  O39 8  
O39 C04  C9  C  0 1 Y N N -29.270 -17.683 -14.133 ? ? ? C04  O39 9  
O39 C05  C10 C  0 1 Y N N -28.498 -17.362 -15.262 ? ? ? C05  O39 10 
O39 C06  C11 C  0 1 Y N N -27.303 -15.693 -13.998 ? ? ? C06  O39 11 
O39 C09  C12 C  0 1 Y N N -24.703 -12.723 -13.257 ? ? ? C09  O39 12 
O39 C11  C13 C  0 1 Y N N -25.622 -14.253 -14.761 ? ? ? C11  O39 13 
O39 C19  C14 C  0 1 Y N N -30.051 -12.267 -9.004  ? ? ? C19  O39 14 
O39 C20  C15 C  0 1 Y N N -28.566 -13.358 -7.526  ? ? ? C20  O39 15 
O39 C21  C16 C  0 1 Y N N -29.896 -13.067 -11.408 ? ? ? C21  O39 16 
O39 C22  C17 C  0 1 Y N N -30.857 -12.737 -13.766 ? ? ? C22  O39 17 
O39 C24  C18 C  0 1 Y N N -30.877 -12.116 -11.597 ? ? ? C24  O39 18 
O39 C26  C19 C  0 1 Y N N -29.828 -13.693 -13.501 ? ? ? C26  O39 19 
O39 C27  C20 C  0 1 Y N N -28.538 -18.338 -7.952  ? ? ? C27  O39 20 
O39 C28  C21 C  0 1 Y N N -29.341 -16.486 -9.239  ? ? ? C28  O39 21 
O39 C29  C22 C  0 1 Y N N -27.260 -17.247 -9.702  ? ? ? C29  O39 22 
O39 C30  C23 C  0 1 Y N N -27.375 -18.243 -8.722  ? ? ? C30  O39 23 
O39 C32  C24 C  0 1 Y N N -26.075 -17.115 -10.518 ? ? ? C32  O39 24 
O39 C33  C25 C  0 1 Y N N -23.844 -16.964 -11.984 ? ? ? C33  O39 25 
O39 C36  C26 C  0 1 Y N N -23.856 -17.971 -11.034 ? ? ? C36  O39 26 
O39 C37  C27 C  0 1 Y N N -24.924 -16.101 -12.097 ? ? ? C37  O39 27 
O39 C38  C28 C  0 1 N N N -22.756 -16.755 -12.821 ? ? ? C38  O39 28 
O39 C40  C29 C  0 1 Y N N -24.460 -11.505 -10.840 ? ? ? C40  O39 29 
O39 C41  C30 C  0 1 Y N N -23.627 -11.082 -11.873 ? ? ? C41  O39 30 
O39 C42  C31 C  0 1 Y N N -23.758 -11.708 -13.103 ? ? ? C42  O39 31 
O39 C44  C32 C  0 1 Y N N -30.130 -14.067 -16.027 ? ? ? C44  O39 32 
O39 C45  C33 C  0 1 Y N N -31.113 -13.111 -16.171 ? ? ? C45  O39 33 
O39 C48  C34 C  0 1 N N N -20.527 -16.903 -11.254 ? ? ? C48  O39 34 
O39 C49  C35 C  0 1 N N N -20.369 -18.331 -10.673 ? ? ? C49  O39 35 
O39 C50  C36 C  0 1 N N N -19.087 -18.774 -9.924  ? ? ? C50  O39 36 
O39 C52  C37 C  0 1 N N N -19.748 -21.535 -9.181  ? ? ? C52  O39 37 
O39 C54  C38 C  0 1 Y N N -19.348 -22.107 -10.560 ? ? ? C54  O39 38 
O39 C55  C39 C  0 1 Y N N -20.120 -22.303 -11.711 ? ? ? C55  O39 39 
O39 C56  C40 C  0 1 Y N N -17.996 -22.471 -10.586 ? ? ? C56  O39 40 
O39 C58  C41 C  0 1 Y N N -18.158 -23.194 -12.809 ? ? ? C58  O39 41 
O39 C59  C42 C  0 1 Y N N -19.515 -22.852 -12.849 ? ? ? C59  O39 42 
O39 C08  C43 C  0 1 Y N N -26.473 -14.637 -13.722 ? ? ? C08  O39 43 
O39 C12  C44 C  0 1 Y N N -24.711 -13.247 -14.540 ? ? ? C12  O39 44 
O39 C25  C45 C  0 1 Y N N -31.427 -11.917 -12.818 ? ? ? C25  O39 45 
O39 C31  C46 C  0 1 Y N N -29.550 -17.408 -8.209  ? ? ? C31  O39 46 
O39 C35  C47 C  0 1 Y N N -25.031 -18.015 -10.307 ? ? ? C35  O39 47 
O39 C39  C48 C  0 1 Y N N -25.405 -12.524 -11.002 ? ? ? C39  O39 48 
O39 C43  C49 C  0 1 Y N N -29.589 -14.264 -14.755 ? ? ? C43  O39 49 
O39 C46  C50 C  0 1 Y N N -31.464 -12.459 -15.004 ? ? ? C46  O39 50 
O39 N10  N1  N  0 1 Y N N -26.379 -14.229 -12.405 ? ? ? N10  O39 51 
O39 N14  N2  N  0 1 Y N N -28.174 -16.324 -9.905  ? ? ? N14  O39 52 
O39 N23  N3  N  0 1 Y N N -29.306 -13.993 -12.206 ? ? ? N23  O39 53 
O39 N34  N4  N  0 1 Y N N -26.120 -16.162 -11.455 ? ? ? N34  O39 54 
O39 N47  N5  N  0 1 N N N -21.483 -16.222 -12.149 ? ? ? N47  O39 55 
O39 N57  N6  N  0 1 Y N N -17.441 -22.997 -11.692 ? ? ? N57  O39 56 
O39 O53  O1  O  0 1 N N N -19.688 -16.098 -10.947 ? ? ? O53  O39 57 
O39 S51  S1  S  0 1 N N N -19.239 -19.964 -8.692  ? ? ? S51  O39 58 
O39 IR07 IR1 IR 0 0 N N N -27.782 -15.073 -11.352 ? ? ? IR07 O39 59 
O39 H1   H1  H  0 1 N N N -29.932 -11.823 -6.887  ? ? ? H1   O39 60 
O39 H2   H2  H  0 1 N N N -27.271 -14.754 -8.467  ? ? ? H2   O39 61 
O39 H3   H3  H  0 1 N N N -29.595 -17.273 -12.050 ? ? ? H3   O39 62 
O39 H4   H4  H  0 1 N N N -26.914 -16.127 -16.082 ? ? ? H4   O39 63 
O39 H5   H5  H  0 1 N N N -30.020 -18.458 -14.190 ? ? ? H5   O39 64 
O39 H6   H6  H  0 1 N N N -28.670 -17.890 -16.188 ? ? ? H6   O39 65 
O39 H7   H7  H  0 1 N N N -25.679 -14.739 -15.724 ? ? ? H7   O39 66 
O39 H8   H8  H  0 1 N N N -30.825 -11.540 -9.201  ? ? ? H8   O39 67 
O39 H9   H9  H  0 1 N N N -28.161 -13.543 -6.542  ? ? ? H9   O39 68 
O39 H10  H10 H  0 1 N N N -31.211 -11.522 -10.759 ? ? ? H10  O39 69 
O39 H11  H11 H  0 1 N N N -28.650 -19.097 -7.192  ? ? ? H11  O39 70 
O39 H12  H12 H  0 1 N N N -30.171 -15.857 -9.524  ? ? ? H12  O39 71 
O39 H13  H13 H  0 1 N N N -26.564 -18.938 -8.562  ? ? ? H13  O39 72 
O39 H14  H14 H  0 1 N N N -23.032 -18.652 -10.877 ? ? ? H14  O39 73 
O39 H15  H15 H  0 1 N N N -24.798 -15.276 -12.782 ? ? ? H15  O39 74 
O39 H16  H16 H  0 1 N N N -23.058 -16.031 -13.592 ? ? ? H16  O39 75 
O39 H17  H17 H  0 1 N N N -22.508 -17.715 -13.297 ? ? ? H17  O39 76 
O39 H18  H18 H  0 1 N N N -24.373 -11.027 -9.875  ? ? ? H18  O39 77 
O39 H19  H19 H  0 1 N N N -22.904 -10.294 -11.721 ? ? ? H19  O39 78 
O39 H20  H20 H  0 1 N N N -23.135 -11.413 -13.934 ? ? ? H20  O39 79 
O39 H21  H21 H  0 1 N N N -29.789 -14.646 -16.872 ? ? ? H21  O39 80 
O39 H22  H22 H  0 1 N N N -31.573 -12.889 -17.122 ? ? ? H22  O39 81 
O39 H23  H23 H  0 1 N N N -21.202 -18.471 -9.968  ? ? ? H23  O39 82 
O39 H24  H24 H  0 1 N N N -20.486 -19.023 -11.520 ? ? ? H24  O39 83 
O39 H25  H25 H  0 1 N N N -18.389 -19.170 -10.677 ? ? ? H25  O39 84 
O39 H26  H26 H  0 1 N N N -18.654 -17.876 -9.459  ? ? ? H26  O39 85 
O39 H27  H27 H  0 1 N N N -20.848 -21.531 -9.151  ? ? ? H27  O39 86 
O39 H28  H28 H  0 1 N N N -19.363 -22.237 -8.427  ? ? ? H28  O39 87 
O39 H29  H29 H  0 1 N N N -21.166 -22.035 -11.722 ? ? ? H29  O39 88 
O39 H30  H30 H  0 1 N N N -17.390 -22.327 -9.704  ? ? ? H30  O39 89 
O39 H31  H31 H  0 1 N N N -17.685 -23.619 -13.682 ? ? ? H31  O39 90 
O39 H32  H32 H  0 1 N N N -20.090 -23.010 -13.749 ? ? ? H32  O39 91 
O39 H33  H33 H  0 1 N N N -24.047 -12.890 -15.313 ? ? ? H33  O39 92 
O39 H34  H34 H  0 1 N N N -32.213 -11.205 -13.023 ? ? ? H34  O39 93 
O39 H35  H35 H  0 1 N N N -30.462 -17.402 -7.631  ? ? ? H35  O39 94 
O39 H36  H36 H  0 1 N N N -25.145 -18.774 -9.548  ? ? ? H36  O39 95 
O39 H37  H37 H  0 1 N N N -26.019 -12.817 -10.163 ? ? ? H37  O39 96 
O39 H38  H38 H  0 1 N N N -28.819 -15.021 -14.735 ? ? ? H38  O39 97 
O39 H39  H39 H  0 1 N N N -32.236 -11.705 -15.044 ? ? ? H39  O39 98 
O39 H40  H40 H  0 1 N N N -21.268 -15.266 -12.348 ? ? ? H40  O39 99 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
O39 C45  C44  SING Y N 1   
O39 C45  C46  DOUB Y N 2   
O39 C44  C43  DOUB Y N 3   
O39 C05  C02  DOUB Y N 4   
O39 C05  C04  SING Y N 5   
O39 C02  C06  SING Y N 6   
O39 C46  C22  SING Y N 7   
O39 C11  C12  DOUB Y N 8   
O39 C11  C08  SING Y N 9   
O39 C43  C26  SING Y N 10  
O39 C12  C09  SING Y N 11  
O39 C04  C01  DOUB Y N 12  
O39 C06  C08  SING N N 13  
O39 C06  C03  DOUB Y N 14  
O39 C22  C26  DOUB Y N 15  
O39 C22  C25  SING Y N 16  
O39 C08  N10  DOUB Y N 17  
O39 C26  N23  SING Y N 18  
O39 C09  C42  SING Y N 19  
O39 C09  C13  DOUB Y N 20  
O39 C42  C41  DOUB Y N 21  
O39 C03  C01  SING Y N 22  
O39 C03  IR07 SING N N 23  
O39 C59  C58  DOUB Y N 24  
O39 C59  C55  SING Y N 25  
O39 C38  N47  SING N N 26  
O39 C38  C33  SING N N 27  
O39 C25  C24  DOUB Y N 28  
O39 C58  N57  SING Y N 29  
O39 N10  C13  SING Y N 30  
O39 N10  IR07 SING N N 31  
O39 C13  C39  SING Y N 32  
O39 N23  C21  DOUB Y N 33  
O39 N23  IR07 SING N N 34  
O39 N47  C48  SING N N 35  
O39 C37  C33  DOUB Y N 36  
O39 C37  N34  SING Y N 37  
O39 C33  C36  SING Y N 38  
O39 C41  C40  SING Y N 39  
O39 C55  C54  DOUB Y N 40  
O39 N57  C56  DOUB Y N 41  
O39 C24  C21  SING Y N 42  
O39 N34  IR07 SING N N 43  
O39 N34  C32  DOUB Y N 44  
O39 C21  C18  SING N N 45  
O39 IR07 C15  SING N N 46  
O39 IR07 N14  SING N N 47  
O39 C48  O53  DOUB N N 48  
O39 C48  C49  SING N N 49  
O39 C36  C35  DOUB Y N 50  
O39 C39  C40  DOUB Y N 51  
O39 C49  C50  SING N N 52  
O39 C56  C54  SING Y N 53  
O39 C54  C52  SING N N 54  
O39 C32  C35  SING Y N 55  
O39 C32  C29  SING N N 56  
O39 C18  C15  DOUB Y N 57  
O39 C18  C19  SING Y N 58  
O39 C15  C17  SING Y N 59  
O39 C50  S51  SING N N 60  
O39 N14  C29  DOUB Y N 61  
O39 N14  C28  SING Y N 62  
O39 C29  C30  SING Y N 63  
O39 C28  C31  DOUB Y N 64  
O39 C52  S51  SING N N 65  
O39 C19  C16  DOUB Y N 66  
O39 C30  C27  DOUB Y N 67  
O39 C17  C20  DOUB Y N 68  
O39 C31  C27  SING Y N 69  
O39 C16  C20  SING Y N 70  
O39 C16  H1   SING N N 71  
O39 C17  H2   SING N N 72  
O39 C01  H3   SING N N 73  
O39 C02  H4   SING N N 74  
O39 C04  H5   SING N N 75  
O39 C05  H6   SING N N 76  
O39 C11  H7   SING N N 77  
O39 C19  H8   SING N N 78  
O39 C20  H9   SING N N 79  
O39 C24  H10  SING N N 80  
O39 C27  H11  SING N N 81  
O39 C28  H12  SING N N 82  
O39 C30  H13  SING N N 83  
O39 C36  H14  SING N N 84  
O39 C37  H15  SING N N 85  
O39 C38  H16  SING N N 86  
O39 C38  H17  SING N N 87  
O39 C40  H18  SING N N 88  
O39 C41  H19  SING N N 89  
O39 C42  H20  SING N N 90  
O39 C44  H21  SING N N 91  
O39 C45  H22  SING N N 92  
O39 C49  H23  SING N N 93  
O39 C49  H24  SING N N 94  
O39 C50  H25  SING N N 95  
O39 C50  H26  SING N N 96  
O39 C52  H27  SING N N 97  
O39 C52  H28  SING N N 98  
O39 C55  H29  SING N N 99  
O39 C56  H30  SING N N 100 
O39 C58  H31  SING N N 101 
O39 C59  H32  SING N N 102 
O39 C12  H33  SING N N 103 
O39 C25  H34  SING N N 104 
O39 C31  H35  SING N N 105 
O39 C35  H36  SING N N 106 
O39 C39  H37  SING N N 107 
O39 C43  H38  SING N N 108 
O39 C46  H39  SING N N 109 
O39 N47  H40  SING N N 110 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
O39 SMILES           ACDLabs              12.01 "O=C(NCc1ccc2c3ccccn3[Ir]34(c5ccccc5c5ccc6ccccc6n53)(c3ccccc3c3ccc5ccccc5n34)n2c1)CCSCc1cccnc1"                                                                                                                         
O39 InChI            InChI                1.06  "InChI=1S/C20H20N4OS.2C15H10N.Ir/c25-20(8-11-26-15-17-4-3-9-21-12-17)24-14-16-6-7-19(23-13-16)18-5-1-2-10-22-18;2*1-2-6-12(7-3-1)15-11-10-13-8-4-5-9-14(13)16-15;/h1-7,9-10,12-13H,8,11,14-15H2,(H,24,25);2*1-6,8-11H;" 
O39 InChIKey         InChI                1.06  PZEUMNNZEIBAQI-UHFFFAOYSA-N                                                                                                                                                                                             
O39 SMILES_CANONICAL CACTVS               3.385 "O=C(CCSCc1cccnc1)NCc2ccc(nc2)c3ccccn3.[Ir](c4ccccc4c5ccc6ccccc6n5)c7ccccc7c8ccc9ccccc9n8"                                                                                                                              
O39 SMILES           CACTVS               3.385 "O=C(CCSCc1cccnc1)NCc2ccc(nc2)c3ccccn3.[Ir](c4ccccc4c5ccc6ccccc6n5)c7ccccc7c8ccc9ccccc9n8"                                                                                                                              
O39 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C=CC3=[N]2[Ir]45(c6c3cccc6)(c7ccccc7C8=[N]4c9ccccc9C=C8)[N]1=C(C=CC=C1)C1=[N]5C=C(C=C1)CNC(=O)CCSCc1cccnc1"                                                                                                 
O39 SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C=CC3=[N]2[Ir]45(c6c3cccc6)(c7ccccc7C8=[N]4c9ccccc9C=C8)[N]1=C(C=CC=C1)C1=[N]5C=C(C=C1)CNC(=O)CCSCc1cccnc1"                                                                                                 
# 
_pdbx_chem_comp_identifier.comp_id           O39 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           ACDLabs 
_pdbx_chem_comp_identifier.program_version   12.01 
_pdbx_chem_comp_identifier.identifier        "(N-[([2,2'-bipyridin]-5-yl-kappa~2~N~1~,N~1'~)methyl]-3-{[(pyridin-3-yl)methyl]sulfanyl}propanamide)bis[2-(quinolin-2-yl-kappaN)phenyl-kappaC~1~]iridium" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
O39 "Create component" 2022-04-20 RCSB 
O39 "Initial release"  2022-08-31 RCSB 
# 
